Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Tyr_trna and Tyr_trna are separated by 209 nucleotides Tyr_trna and purU are separated by 159 nucleotides purU and ychJ are separated by 49 nucleotides ychJ and rssA are separated by 73 nucleotides
OKFHMN_28560: Tyr_trna - tRNA-Tyr(gta), at 5,480,906 to 5,480,990
_trna
OKFHMN_28565: Tyr_trna - tRNA-Tyr(gta), at 5,481,200 to 5,481,284
_trna
OKFHMN_28570: purU - formyltetrahydrofolate deformylase, at 5,481,444 to 5,482,286
purU
OKFHMN_28575: ychJ - YchJ family protein, at 5,482,336 to 5,482,794
ychJ
OKFHMN_28580: rssA - patatin-like phospholipase RssA, at 5,482,868 to 5,483,812
rssA
Position (kb) 5481
5482
5483 Strain fitness (log2 ratio) -1
0
1
2 at 5481.014 kb on - strand at 5481.044 kb on - strand at 5481.120 kb on - strand at 5481.552 kb on - strand, within purU at 5481.670 kb on + strand, within purU at 5481.915 kb on + strand, within purU at 5482.253 kb on + strand at 5482.425 kb on - strand, within ychJ at 5482.648 kb on + strand, within ychJ at 5482.653 kb on - strand, within ychJ at 5482.737 kb on - strand, within ychJ at 5482.737 kb on - strand, within ychJ at 5482.750 kb on + strand at 5482.755 kb on + strand at 5483.193 kb on + strand, within rssA
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 5,481,014 - +0.7 5,481,044 - -0.3 5,481,120 - +0.6 5,481,552 - purU OKFHMN_28570 0.13 +2.2 5,481,670 + purU OKFHMN_28570 0.27 -0.1 5,481,915 + purU OKFHMN_28570 0.56 -0.2 5,482,253 + +0.9 5,482,425 - ychJ OKFHMN_28575 0.19 +0.5 5,482,648 + ychJ OKFHMN_28575 0.68 -0.2 5,482,653 - ychJ OKFHMN_28575 0.69 +1.3 5,482,737 - ychJ OKFHMN_28575 0.87 -0.1 5,482,737 - ychJ OKFHMN_28575 0.87 -0.1 5,482,750 + +0.9 5,482,755 + -1.0 5,483,193 + rssA OKFHMN_28580 0.34 -0.1
Or see this region's nucleotide sequence