Strain Fitness in Escherichia coli ECRC100 around OKFHMN_27400

Experiment: JK42

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpurR and ynhF are separated by 298 nucleotidesynhF and ydhP are separated by 165 nucleotidesydhP and sodB are separated by 145 nucleotidessodB and mepH are separated by 127 nucleotides OKFHMN_27385: purR - HTH-type transcriptional repressor PurR, at 5,271,840 to 5,272,865 purR OKFHMN_27395: ynhF - stress response protein YnhF, at 5,273,164 to 5,273,253 ynhF OKFHMN_27400: ydhP - Inner membrane transport protein YdhP, at 5,273,419 to 5,274,588 ydhP OKFHMN_27405: sodB - superoxide dismutase [Fe], at 5,274,734 to 5,275,315 sodB OKFHMN_27410: mepH - peptidoglycan DD-endopeptidase MepH, at 5,275,443 to 5,276,258 mepH Position (kb) 5273 5274 5275Strain fitness (log2 ratio) -1 0 1 2at 5272.547 kb on - strand, within purRat 5272.648 kb on + strand, within purRat 5272.733 kb on - strand, within purRat 5273.202 kb on + strand, within ynhFat 5273.552 kb on + strand, within ydhPat 5273.576 kb on + strand, within ydhPat 5273.697 kb on + strand, within ydhPat 5274.085 kb on + strand, within ydhPat 5274.085 kb on + strand, within ydhPat 5274.108 kb on + strand, within ydhPat 5274.255 kb on + strand, within ydhPat 5274.255 kb on + strand, within ydhPat 5274.256 kb on - strand, within ydhPat 5274.408 kb on + strand, within ydhPat 5274.825 kb on + strand, within sodBat 5274.826 kb on - strand, within sodBat 5275.345 kb on - strandat 5275.349 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction JK42
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5,272,547 - purR OKFHMN_27385 0.69 +0.7
5,272,648 + purR OKFHMN_27385 0.79 +0.5
5,272,733 - purR OKFHMN_27385 0.87 +0.5
5,273,202 + ynhF OKFHMN_27395 0.42 +0.3
5,273,552 + ydhP OKFHMN_27400 0.11 +1.5
5,273,576 + ydhP OKFHMN_27400 0.13 +0.9
5,273,697 + ydhP OKFHMN_27400 0.24 -1.1
5,274,085 + ydhP OKFHMN_27400 0.57 -1.1
5,274,085 + ydhP OKFHMN_27400 0.57 -0.8
5,274,108 + ydhP OKFHMN_27400 0.59 +0.9
5,274,255 + ydhP OKFHMN_27400 0.71 +0.5
5,274,255 + ydhP OKFHMN_27400 0.71 +0.8
5,274,256 - ydhP OKFHMN_27400 0.72 +0.3
5,274,408 + ydhP OKFHMN_27400 0.85 -0.3
5,274,825 + sodB OKFHMN_27405 0.16 +2.3
5,274,826 - sodB OKFHMN_27405 0.16 +0.5
5,275,345 - +0.8
5,275,349 - -0.8

Or see this region's nucleotide sequence