Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydiY and yniD are separated by 52 nucleotides yniD and OKFHMN_27050 are separated by 174 nucleotides OKFHMN_27050 and thrS are separated by 522 nucleotides
OKFHMN_27040: ydiY - Uncharacterized protein YdiY, at 5,204,623 to 5,205,381
ydiY
OKFHMN_27045: yniD - Uncharacterized protein YniD, at 5,205,434 to 5,205,541
yniD
OKFHMN_27050: OKFHMN_27050 - ShET2 enterotoxin, N-terminal region, at 5,205,716 to 5,207,614
_27050
OKFHMN_27055: thrS - threonine--tRNA ligase, at 5,208,137 to 5,210,065
thrS
Position (kb) 5205
5206
5207
5208 Strain fitness (log2 ratio) -1
0
1 at 5204.877 kb on + strand, within ydiY at 5204.881 kb on - strand, within ydiY at 5205.109 kb on + strand, within ydiY at 5205.112 kb on - strand, within ydiY at 5205.251 kb on + strand, within ydiY at 5205.264 kb on + strand, within ydiY at 5205.697 kb on - strand at 5206.648 kb on - strand, within OKFHMN_27050 at 5206.652 kb on - strand, within OKFHMN_27050 at 5206.780 kb on - strand, within OKFHMN_27050 at 5206.831 kb on + strand, within OKFHMN_27050 at 5206.832 kb on - strand, within OKFHMN_27050 at 5206.861 kb on + strand, within OKFHMN_27050 at 5206.862 kb on - strand, within OKFHMN_27050 at 5206.904 kb on + strand, within OKFHMN_27050 at 5206.905 kb on - strand, within OKFHMN_27050 at 5207.900 kb on - strand at 5207.940 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 5,204,877 + ydiY OKFHMN_27040 0.33 -1.1 5,204,881 - ydiY OKFHMN_27040 0.34 -0.3 5,205,109 + ydiY OKFHMN_27040 0.64 +0.1 5,205,112 - ydiY OKFHMN_27040 0.64 -1.1 5,205,251 + ydiY OKFHMN_27040 0.83 +0.3 5,205,264 + ydiY OKFHMN_27040 0.84 -0.3 5,205,697 - -0.1 5,206,648 - OKFHMN_27050 0.49 +0.1 5,206,652 - OKFHMN_27050 0.49 +0.2 5,206,780 - OKFHMN_27050 0.56 +0.6 5,206,831 + OKFHMN_27050 0.59 -0.0 5,206,832 - OKFHMN_27050 0.59 -0.4 5,206,861 + OKFHMN_27050 0.60 -0.9 5,206,862 - OKFHMN_27050 0.60 +0.0 5,206,904 + OKFHMN_27050 0.63 -0.5 5,206,905 - OKFHMN_27050 0.63 -0.8 5,207,900 - -1.3 5,207,940 + +0.8
Or see this region's nucleotide sequence