Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26700

Experiment: JK42

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntdgcJ and cdgI are separated by 180 nucleotidescdgI and yeaH are separated by 278 nucleotides OKFHMN_26695: dgcJ - diguanylate cyclase DgcJ, at 5,135,283 to 5,136,773 dgcJ OKFHMN_26700: cdgI - putative diguanylate cyclase CdgI, at 5,136,954 to 5,138,297 cdgI OKFHMN_26705: yeaH - UPF0229 protein YeaH, at 5,138,576 to 5,139,859 yeaH Position (kb) 5136 5137 5138 5139Strain fitness (log2 ratio) -1 0 1at 5136.305 kb on - strand, within dgcJat 5136.615 kb on - strand, within dgcJat 5136.759 kb on - strandat 5137.149 kb on - strand, within cdgIat 5137.149 kb on - strand, within cdgIat 5137.554 kb on - strand, within cdgIat 5137.614 kb on + strand, within cdgIat 5137.615 kb on - strand, within cdgIat 5138.502 kb on + strandat 5138.748 kb on + strand, within yeaH

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction JK42
remove
5,136,305 - dgcJ OKFHMN_26695 0.69 +0.7
5,136,615 - dgcJ OKFHMN_26695 0.89 +1.5
5,136,759 - -1.0
5,137,149 - cdgI OKFHMN_26700 0.15 -0.5
5,137,149 - cdgI OKFHMN_26700 0.15 -1.0
5,137,554 - cdgI OKFHMN_26700 0.45 -1.2
5,137,614 + cdgI OKFHMN_26700 0.49 +0.1
5,137,615 - cdgI OKFHMN_26700 0.49 +1.0
5,138,502 + -1.3
5,138,748 + yeaH OKFHMN_26705 0.13 +0.2

Or see this region's nucleotide sequence