Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_25320 and rusA are separated by 12 nucleotides rusA and OKFHMN_25330 overlap by 4 nucleotides OKFHMN_25330 and Ile2_trna are separated by 210 nucleotides Ile2_trna and Arg_trna are separated by 7 nucleotides
OKFHMN_25320: OKFHMN_25320 - DUF968 domain-containing protein, at 4,910,802 to 4,911,851
_25320
OKFHMN_25325: rusA - Endodeoxyribonuclease RusA, at 4,911,864 to 4,912,223
rusA
OKFHMN_25330: OKFHMN_25330 - antiterminator, at 4,912,220 to 4,912,909
_25330
OKFHMN_25335: Ile2_trna - tRNA-Ile2(cat), at 4,913,120 to 4,913,195
_trna
OKFHMN_25340: Arg_trna - tRNA-Arg(tcg), at 4,913,203 to 4,913,279
_trna
Position (kb) 4911
4912
4913 Strain fitness (log2 ratio) -1
0
1
2 at 4910.900 kb on - strand at 4911.071 kb on + strand, within OKFHMN_25320 at 4911.072 kb on - strand, within OKFHMN_25320 at 4911.283 kb on + strand, within OKFHMN_25320 at 4911.415 kb on + strand, within OKFHMN_25320 at 4911.416 kb on - strand, within OKFHMN_25320 at 4911.442 kb on + strand, within OKFHMN_25320 at 4911.573 kb on - strand, within OKFHMN_25320 at 4912.232 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 4,910,900 - +0.5 4,911,071 + OKFHMN_25320 0.26 +0.0 4,911,072 - OKFHMN_25320 0.26 +2.6 4,911,283 + OKFHMN_25320 0.46 -0.7 4,911,415 + OKFHMN_25320 0.58 +0.4 4,911,416 - OKFHMN_25320 0.58 -0.0 4,911,442 + OKFHMN_25320 0.61 -0.5 4,911,573 - OKFHMN_25320 0.73 +0.3 4,912,232 + -0.2
Or see this region's nucleotide sequence