Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt eCs1768 and OKFHMN_25270 are separated by 31 nucleotides OKFHMN_25270 and OKFHMN_25275 are separated by 34 nucleotides OKFHMN_25275 and OKFHMN_25280 are separated by 21 nucleotides OKFHMN_25280 and OKFHMN_25285 overlap by 4 nucleotides OKFHMN_25285 and OKFHMN_25290 are separated by 32 nucleotides OKFHMN_25290 and OKFHMN_25295 overlap by 4 nucleotides
OKFHMN_25265: eCs1768 - phage replisome organizer, at 4,905,735 to 4,906,772
eCs1768
OKFHMN_25270: OKFHMN_25270 - replication protein, at 4,906,804 to 4,907,226
_25270
OKFHMN_25275: OKFHMN_25275 - DUF1627 domain-containing protein, at 4,907,261 to 4,907,959
_25275
OKFHMN_25280: OKFHMN_25280 - hypothetical protein, at 4,907,981 to 4,908,205
_25280
OKFHMN_25285: OKFHMN_25285 - Eae-like protein, at 4,908,202 to 4,908,558
_25285
OKFHMN_25290: OKFHMN_25290 - hypothetical protein, at 4,908,591 to 4,908,743
_25290
OKFHMN_25295: OKFHMN_25295 - Prophage protein, at 4,908,740 to 4,909,051
_25295
Position (kb) 4907
4908 Strain fitness (log2 ratio) -1
0
1 at 4907.054 kb on + strand, within OKFHMN_25270 at 4907.054 kb on + strand, within OKFHMN_25270 at 4907.602 kb on + strand, within OKFHMN_25275 at 4907.606 kb on + strand, within OKFHMN_25275 at 4907.606 kb on + strand, within OKFHMN_25275 at 4907.619 kb on + strand, within OKFHMN_25275 at 4907.928 kb on + strand at 4908.175 kb on + strand, within OKFHMN_25280 at 4908.175 kb on + strand, within OKFHMN_25280 at 4908.213 kb on + strand at 4908.260 kb on + strand, within OKFHMN_25285 at 4908.343 kb on - strand, within OKFHMN_25285 at 4908.387 kb on + strand, within OKFHMN_25285 at 4908.392 kb on - strand, within OKFHMN_25285 at 4908.512 kb on + strand, within OKFHMN_25285 at 4908.512 kb on + strand, within OKFHMN_25285 at 4908.512 kb on + strand, within OKFHMN_25285
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 4,907,054 + OKFHMN_25270 0.59 -0.1 4,907,054 + OKFHMN_25270 0.59 +1.3 4,907,602 + OKFHMN_25275 0.49 +0.6 4,907,606 + OKFHMN_25275 0.49 +0.1 4,907,606 + OKFHMN_25275 0.49 +0.2 4,907,619 + OKFHMN_25275 0.51 +0.6 4,907,928 + -1.0 4,908,175 + OKFHMN_25280 0.86 +0.6 4,908,175 + OKFHMN_25280 0.86 -0.4 4,908,213 + +0.5 4,908,260 + OKFHMN_25285 0.16 +0.3 4,908,343 - OKFHMN_25285 0.39 +1.1 4,908,387 + OKFHMN_25285 0.52 +0.0 4,908,392 - OKFHMN_25285 0.53 +1.6 4,908,512 + OKFHMN_25285 0.87 +1.4 4,908,512 + OKFHMN_25285 0.87 +0.0 4,908,512 + OKFHMN_25285 0.87 +1.2
Or see this region's nucleotide sequence