Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_25040 and cbtA are separated by 88 nucleotides cbtA and yeeT are separated by 73 nucleotides yeeT and yeeS are separated by 62 nucleotides yeeS and OKFHMN_25060 are separated by 14 nucleotides OKFHMN_25060 and OKFHMN_25065 are separated by 81 nucleotides
OKFHMN_25040: OKFHMN_25040 - toxin of the YeeV-YeeU toxin-antitoxin system, at 4,862,685 to 4,862,948
_25040
OKFHMN_25045: cbtA - type IV toxin-antitoxin system toxin CbtA, at 4,863,037 to 4,863,405
cbtA
OKFHMN_25050: yeeT - Uncharacterized protein YeeT, at 4,863,479 to 4,863,700
yeeT
OKFHMN_25055: yeeS - UPF0758 protein YeeS, at 4,863,763 to 4,864,239
yeeS
OKFHMN_25060: OKFHMN_25060 - restriction endonuclease, at 4,864,254 to 4,864,733
_25060
OKFHMN_25065: OKFHMN_25065 - DUF932 domain-containing protein, at 4,864,815 to 4,865,636
_25065
Position (kb) 4863
4864
4865 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4862.877 kb on + strand, within OKFHMN_25040 at 4862.877 kb on + strand, within OKFHMN_25040 at 4862.975 kb on - strand at 4863.025 kb on + strand at 4863.228 kb on - strand, within cbtA at 4863.511 kb on - strand, within yeeT at 4863.511 kb on - strand, within yeeT at 4863.588 kb on + strand, within yeeT at 4863.588 kb on + strand, within yeeT at 4863.615 kb on + strand, within yeeT at 4863.668 kb on - strand, within yeeT at 4863.668 kb on - strand, within yeeT at 4864.370 kb on - strand, within OKFHMN_25060 at 4864.446 kb on + strand, within OKFHMN_25060 at 4864.488 kb on - strand, within OKFHMN_25060 at 4864.691 kb on + strand at 4865.202 kb on + strand, within OKFHMN_25065 at 4865.203 kb on - strand, within OKFHMN_25065
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 4,862,877 + OKFHMN_25040 0.73 +1.6 4,862,877 + OKFHMN_25040 0.73 +0.1 4,862,975 - +0.7 4,863,025 + +1.2 4,863,228 - cbtA OKFHMN_25045 0.52 +0.0 4,863,511 - yeeT OKFHMN_25050 0.14 +0.1 4,863,511 - yeeT OKFHMN_25050 0.14 -2.0 4,863,588 + yeeT OKFHMN_25050 0.49 -1.1 4,863,588 + yeeT OKFHMN_25050 0.49 -0.8 4,863,615 + yeeT OKFHMN_25050 0.61 +0.2 4,863,668 - yeeT OKFHMN_25050 0.85 -0.2 4,863,668 - yeeT OKFHMN_25050 0.85 -1.2 4,864,370 - OKFHMN_25060 0.24 -0.2 4,864,446 + OKFHMN_25060 0.40 -0.4 4,864,488 - OKFHMN_25060 0.49 +0.6 4,864,691 + +0.8 4,865,202 + OKFHMN_25065 0.47 -2.9 4,865,203 - OKFHMN_25065 0.47 +0.1
Or see this region's nucleotide sequence