Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_23945 and yehL are separated by 10 nucleotides yehL and zorP are separated by 432 nucleotides
OKFHMN_23945: OKFHMN_23945 - Protein, at 4,668,885 to 4,670,414
_23945
OKFHMN_23950: yehL - Uncharacterized protein YehL, at 4,670,425 to 4,671,513
yehL
OKFHMN_23960: zorP - Small toxic protein ZorP, at 4,671,946 to 4,672,035
zorP
Position (kb)
4670
4671
4672 Strain fitness (log2 ratio)
-1
0
1
2 at 4669.482 kb on + strand, within OKFHMN_23945 at 4669.482 kb on + strand, within OKFHMN_23945 at 4669.487 kb on + strand, within OKFHMN_23945 at 4669.594 kb on - strand, within OKFHMN_23945 at 4669.706 kb on - strand, within OKFHMN_23945 at 4669.706 kb on - strand, within OKFHMN_23945 at 4669.706 kb on - strand, within OKFHMN_23945 at 4669.717 kb on + strand, within OKFHMN_23945 at 4669.831 kb on - strand, within OKFHMN_23945 at 4670.139 kb on - strand, within OKFHMN_23945 at 4670.237 kb on - strand, within OKFHMN_23945 at 4670.246 kb on + strand, within OKFHMN_23945 at 4670.247 kb on - strand, within OKFHMN_23945 at 4670.323 kb on + strand at 4670.378 kb on + strand at 4670.378 kb on + strand at 4670.453 kb on + strand at 4670.453 kb on + strand at 4670.454 kb on - strand at 4670.476 kb on - strand at 4670.502 kb on - strand at 4670.656 kb on - strand, within yehL at 4670.656 kb on - strand, within yehL at 4670.926 kb on - strand, within yehL at 4671.004 kb on + strand, within yehL at 4671.005 kb on - strand, within yehL at 4671.005 kb on - strand, within yehL at 4671.034 kb on - strand, within yehL at 4671.174 kb on + strand, within yehL at 4671.309 kb on + strand, within yehL at 4671.309 kb on + strand, within yehL at 4671.310 kb on - strand, within yehL at 4671.331 kb on - strand, within yehL at 4671.352 kb on - strand, within yehL at 4671.375 kb on + strand, within yehL at 4671.442 kb on + strand at 4671.467 kb on - strand at 4671.580 kb on + strand at 4671.662 kb on + strand at 4671.745 kb on - strand at 4671.749 kb on + strand at 4671.760 kb on - strand at 4671.876 kb on - strand at 4671.903 kb on - strand at 4672.488 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 4,669,482 + OKFHMN_23945 0.39 -0.2 4,669,482 + OKFHMN_23945 0.39 +2.6 4,669,487 + OKFHMN_23945 0.39 -1.0 4,669,594 - OKFHMN_23945 0.46 +1.2 4,669,706 - OKFHMN_23945 0.54 +0.8 4,669,706 - OKFHMN_23945 0.54 -0.1 4,669,706 - OKFHMN_23945 0.54 +0.2 4,669,717 + OKFHMN_23945 0.54 -0.5 4,669,831 - OKFHMN_23945 0.62 +0.2 4,670,139 - OKFHMN_23945 0.82 +0.3 4,670,237 - OKFHMN_23945 0.88 -0.3 4,670,246 + OKFHMN_23945 0.89 +1.6 4,670,247 - OKFHMN_23945 0.89 +1.2 4,670,323 + +0.9 4,670,378 + +0.8 4,670,378 + +0.2 4,670,453 + +0.4 4,670,453 + -0.7 4,670,454 - +1.0 4,670,476 - +0.7 4,670,502 - +1.6 4,670,656 - yehL OKFHMN_23950 0.21 +0.2 4,670,656 - yehL OKFHMN_23950 0.21 +0.2 4,670,926 - yehL OKFHMN_23950 0.46 -0.0 4,671,004 + yehL OKFHMN_23950 0.53 +0.3 4,671,005 - yehL OKFHMN_23950 0.53 +0.7 4,671,005 - yehL OKFHMN_23950 0.53 -0.9 4,671,034 - yehL OKFHMN_23950 0.56 -1.7 4,671,174 + yehL OKFHMN_23950 0.69 -0.0 4,671,309 + yehL OKFHMN_23950 0.81 +0.1 4,671,309 + yehL OKFHMN_23950 0.81 -0.2 4,671,310 - yehL OKFHMN_23950 0.81 -0.2 4,671,331 - yehL OKFHMN_23950 0.83 -0.4 4,671,352 - yehL OKFHMN_23950 0.85 -0.4 4,671,375 + yehL OKFHMN_23950 0.87 -0.2 4,671,442 + -0.0 4,671,467 - -0.2 4,671,580 + -0.6 4,671,662 + +1.0 4,671,745 - +0.6 4,671,749 + +0.6 4,671,760 - -0.0 4,671,876 - +0.2 4,671,903 - +0.3 4,672,488 + -1.3
Or see this region's nucleotide sequence