Strain Fitness in Escherichia coli ECRC100 around OKFHMN_23950

Experiment: JK42

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_23945 and yehL are separated by 10 nucleotidesyehL and zorP are separated by 432 nucleotides OKFHMN_23945: OKFHMN_23945 - Protein, at 4,668,885 to 4,670,414 _23945 OKFHMN_23950: yehL - Uncharacterized protein YehL, at 4,670,425 to 4,671,513 yehL OKFHMN_23960: zorP - Small toxic protein ZorP, at 4,671,946 to 4,672,035 zorP Position (kb) 4670 4671 4672Strain fitness (log2 ratio) -1 0 1 2at 4669.482 kb on + strand, within OKFHMN_23945at 4669.482 kb on + strand, within OKFHMN_23945at 4669.487 kb on + strand, within OKFHMN_23945at 4669.594 kb on - strand, within OKFHMN_23945at 4669.706 kb on - strand, within OKFHMN_23945at 4669.706 kb on - strand, within OKFHMN_23945at 4669.706 kb on - strand, within OKFHMN_23945at 4669.717 kb on + strand, within OKFHMN_23945at 4669.831 kb on - strand, within OKFHMN_23945at 4670.139 kb on - strand, within OKFHMN_23945at 4670.237 kb on - strand, within OKFHMN_23945at 4670.246 kb on + strand, within OKFHMN_23945at 4670.247 kb on - strand, within OKFHMN_23945at 4670.323 kb on + strandat 4670.378 kb on + strandat 4670.378 kb on + strandat 4670.453 kb on + strandat 4670.453 kb on + strandat 4670.454 kb on - strandat 4670.476 kb on - strandat 4670.502 kb on - strandat 4670.656 kb on - strand, within yehLat 4670.656 kb on - strand, within yehLat 4670.926 kb on - strand, within yehLat 4671.004 kb on + strand, within yehLat 4671.005 kb on - strand, within yehLat 4671.005 kb on - strand, within yehLat 4671.034 kb on - strand, within yehLat 4671.174 kb on + strand, within yehLat 4671.309 kb on + strand, within yehLat 4671.309 kb on + strand, within yehLat 4671.310 kb on - strand, within yehLat 4671.331 kb on - strand, within yehLat 4671.352 kb on - strand, within yehLat 4671.375 kb on + strand, within yehLat 4671.442 kb on + strandat 4671.467 kb on - strandat 4671.580 kb on + strandat 4671.662 kb on + strandat 4671.745 kb on - strandat 4671.749 kb on + strandat 4671.760 kb on - strandat 4671.876 kb on - strandat 4671.903 kb on - strandat 4672.488 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction JK42
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4,669,482 + OKFHMN_23945 0.39 -0.2
4,669,482 + OKFHMN_23945 0.39 +2.6
4,669,487 + OKFHMN_23945 0.39 -1.0
4,669,594 - OKFHMN_23945 0.46 +1.2
4,669,706 - OKFHMN_23945 0.54 +0.8
4,669,706 - OKFHMN_23945 0.54 -0.1
4,669,706 - OKFHMN_23945 0.54 +0.2
4,669,717 + OKFHMN_23945 0.54 -0.5
4,669,831 - OKFHMN_23945 0.62 +0.2
4,670,139 - OKFHMN_23945 0.82 +0.3
4,670,237 - OKFHMN_23945 0.88 -0.3
4,670,246 + OKFHMN_23945 0.89 +1.6
4,670,247 - OKFHMN_23945 0.89 +1.2
4,670,323 + +0.9
4,670,378 + +0.8
4,670,378 + +0.2
4,670,453 + +0.4
4,670,453 + -0.7
4,670,454 - +1.0
4,670,476 - +0.7
4,670,502 - +1.6
4,670,656 - yehL OKFHMN_23950 0.21 +0.2
4,670,656 - yehL OKFHMN_23950 0.21 +0.2
4,670,926 - yehL OKFHMN_23950 0.46 -0.0
4,671,004 + yehL OKFHMN_23950 0.53 +0.3
4,671,005 - yehL OKFHMN_23950 0.53 +0.7
4,671,005 - yehL OKFHMN_23950 0.53 -0.9
4,671,034 - yehL OKFHMN_23950 0.56 -1.7
4,671,174 + yehL OKFHMN_23950 0.69 -0.0
4,671,309 + yehL OKFHMN_23950 0.81 +0.1
4,671,309 + yehL OKFHMN_23950 0.81 -0.2
4,671,310 - yehL OKFHMN_23950 0.81 -0.2
4,671,331 - yehL OKFHMN_23950 0.83 -0.4
4,671,352 - yehL OKFHMN_23950 0.85 -0.4
4,671,375 + yehL OKFHMN_23950 0.87 -0.2
4,671,442 + -0.0
4,671,467 - -0.2
4,671,580 + -0.6
4,671,662 + +1.0
4,671,745 - +0.6
4,671,749 + +0.6
4,671,760 - -0.0
4,671,876 - +0.2
4,671,903 - +0.3
4,672,488 + -1.3

Or see this region's nucleotide sequence