Strain Fitness in Escherichia coli ECRC100 around OKFHMN_22790

Experiment: JK42

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfcC and pta are separated by 231 nucleotidespta and ackA are separated by 74 nucleotides OKFHMN_22785: yfcC - putative basic amino acid antiporter YfcC, at 4,429,898 to 4,431,376 yfcC OKFHMN_22790: pta - phosphate acetyltransferase, at 4,431,608 to 4,433,752 pta OKFHMN_22795: ackA - acetate kinase, at 4,433,827 to 4,435,029 ackA Position (kb) 4431 4432 4433 4434Strain fitness (log2 ratio) -2 -1 0 1at 4430.830 kb on - strand, within yfcCat 4430.830 kb on - strand, within yfcCat 4430.830 kb on - strand, within yfcCat 4430.830 kb on - strand, within yfcCat 4430.851 kb on + strand, within yfcCat 4430.852 kb on - strand, within yfcCat 4430.927 kb on + strand, within yfcCat 4431.427 kb on + strandat 4431.456 kb on + strandat 4431.559 kb on + strandat 4432.650 kb on + strand, within ptaat 4432.663 kb on - strand, within ptaat 4433.593 kb on + strandat 4434.468 kb on - strand, within ackAat 4434.468 kb on - strand, within ackA

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Per-strain Table

Position Strand Gene LocusTag Fraction JK42
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4,430,830 - yfcC OKFHMN_22785 0.63 -2.3
4,430,830 - yfcC OKFHMN_22785 0.63 +0.3
4,430,830 - yfcC OKFHMN_22785 0.63 -0.4
4,430,830 - yfcC OKFHMN_22785 0.63 -0.5
4,430,851 + yfcC OKFHMN_22785 0.64 +0.1
4,430,852 - yfcC OKFHMN_22785 0.65 +1.0
4,430,927 + yfcC OKFHMN_22785 0.70 -0.5
4,431,427 + -0.2
4,431,456 + +0.6
4,431,559 + +0.1
4,432,650 + pta OKFHMN_22790 0.49 +0.9
4,432,663 - pta OKFHMN_22790 0.49 +0.1
4,433,593 + -0.7
4,434,468 - ackA OKFHMN_22795 0.53 -0.7
4,434,468 - ackA OKFHMN_22795 0.53 +0.6

Or see this region's nucleotide sequence