Strain Fitness in Escherichia coli ECRC100 around OKFHMN_21020

Experiment: JK42

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_21010 and OKFHMN_21015 overlap by 4 nucleotidesOKFHMN_21015 and OKFHMN_21020 overlap by 4 nucleotidesOKFHMN_21020 and OKFHMN_21025 are separated by 252 nucleotides OKFHMN_21010: OKFHMN_21010 - protein NinG, at 4,084,924 to 4,085,535 _21010 OKFHMN_21015: OKFHMN_21015 - Serine/threonine-protein phosphatase, at 4,085,532 to 4,086,197 _21015 OKFHMN_21020: OKFHMN_21020 - Antitermination protein Q, at 4,086,194 to 4,086,817 _21020 OKFHMN_21025: OKFHMN_21025 - Membrane protein, at 4,087,070 to 4,087,813 _21025 Position (kb) 4086 4087Strain fitness (log2 ratio) -2 -1 0 1 2at 4086.355 kb on + strand, within OKFHMN_21020at 4086.391 kb on + strand, within OKFHMN_21020at 4086.435 kb on - strand, within OKFHMN_21020at 4086.466 kb on + strand, within OKFHMN_21020at 4086.478 kb on - strand, within OKFHMN_21020at 4086.580 kb on + strand, within OKFHMN_21020at 4086.580 kb on + strand, within OKFHMN_21020at 4086.581 kb on - strand, within OKFHMN_21020at 4086.581 kb on - strand, within OKFHMN_21020at 4086.607 kb on - strand, within OKFHMN_21020at 4086.634 kb on + strand, within OKFHMN_21020at 4086.693 kb on + strand, within OKFHMN_21020at 4086.743 kb on + strand, within OKFHMN_21020at 4086.744 kb on - strand, within OKFHMN_21020at 4086.744 kb on - strand, within OKFHMN_21020at 4086.844 kb on + strandat 4086.913 kb on - strandat 4086.951 kb on - strandat 4086.979 kb on + strandat 4087.003 kb on - strandat 4087.003 kb on - strandat 4087.003 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction JK42
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4,086,355 + OKFHMN_21020 0.26 -0.1
4,086,391 + OKFHMN_21020 0.32 +0.9
4,086,435 - OKFHMN_21020 0.39 -0.1
4,086,466 + OKFHMN_21020 0.44 -0.1
4,086,478 - OKFHMN_21020 0.46 -1.1
4,086,580 + OKFHMN_21020 0.62 -0.1
4,086,580 + OKFHMN_21020 0.62 +0.6
4,086,581 - OKFHMN_21020 0.62 -0.2
4,086,581 - OKFHMN_21020 0.62 -0.1
4,086,607 - OKFHMN_21020 0.66 +2.7
4,086,634 + OKFHMN_21020 0.71 -1.1
4,086,693 + OKFHMN_21020 0.80 -0.6
4,086,743 + OKFHMN_21020 0.88 -0.8
4,086,744 - OKFHMN_21020 0.88 +0.3
4,086,744 - OKFHMN_21020 0.88 +0.2
4,086,844 + -0.3
4,086,913 - +0.5
4,086,951 - -0.3
4,086,979 + -2.2
4,087,003 - -0.1
4,087,003 - -1.1
4,087,003 - +1.3

Or see this region's nucleotide sequence