Strain Fitness in Escherichia coli ECRC100 around OKFHMN_20400

Experiment: JK42

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JK42
3,971,207	+	cas3	OKFHMN_20395	0.71	-0.6
3,971,324	+	cas3	OKFHMN_20395	0.75	-0.5
3,971,324	+	cas3	OKFHMN_20395	0.75	-0.0
3,971,324	+	cas3	OKFHMN_20395	0.75	+1.6
3,971,325	-	cas3	OKFHMN_20395	0.75	-0.5
3,971,439	-	cas3	OKFHMN_20395	0.79	+1.2
3,971,448	+	cas3	OKFHMN_20395	0.80	-0.1
3,971,448	+	cas3	OKFHMN_20395	0.80	+1.0
3,971,449	-	cas3	OKFHMN_20395	0.80	+1.8
3,971,449	-	cas3	OKFHMN_20395	0.80	+0.4
3,971,449	-	cas3	OKFHMN_20395	0.80	-0.4
3,971,449	-	cas3	OKFHMN_20395	0.80	-0.4
3,971,449	-	cas3	OKFHMN_20395	0.80	-1.5
3,971,449	-	cas3	OKFHMN_20395	0.80	+1.8
3,971,449	-	cas3	OKFHMN_20395	0.80	+1.0
3,971,491	+	cas3	OKFHMN_20395	0.81	+0.5
3,971,540	+	cas3	OKFHMN_20395	0.83	+0.0
3,971,553	+	cas3	OKFHMN_20395	0.83	+0.2
3,971,569	+	cas3	OKFHMN_20395	0.84	-1.0
3,971,570	-	cas3	OKFHMN_20395	0.84	+0.8
3,971,779	-				-0.2
3,972,002	+				+0.2
3,972,003	-				+0.8
3,972,092	+				-0.2
3,972,096	+				-0.1
3,972,096	+				-0.0
3,972,097	-				+0.3
3,972,260	+	casA	OKFHMN_20400	0.10	-0.3
3,972,263	+	casA	OKFHMN_20400	0.11	+0.1
3,972,263	+	casA	OKFHMN_20400	0.11	+2.4
3,972,264	-	casA	OKFHMN_20400	0.11	+0.9
3,972,306	+	casA	OKFHMN_20400	0.13	-0.4
3,972,307	-	casA	OKFHMN_20400	0.13	-0.0
3,972,359	+	casA	OKFHMN_20400	0.17	-1.6
3,972,359	+	casA	OKFHMN_20400	0.17	-1.1
3,972,486	+	casA	OKFHMN_20400	0.25	+0.2
3,972,527	+	casA	OKFHMN_20400	0.28	-0.9
3,972,527	+	casA	OKFHMN_20400	0.28	+0.5
3,972,528	-	casA	OKFHMN_20400	0.28	-0.1
3,972,563	+	casA	OKFHMN_20400	0.30	-0.6
3,972,569	+	casA	OKFHMN_20400	0.30	+0.3
3,972,570	-	casA	OKFHMN_20400	0.30	+0.0
3,972,652	+	casA	OKFHMN_20400	0.36	+0.2
3,972,652	+	casA	OKFHMN_20400	0.36	+0.8
3,972,653	-	casA	OKFHMN_20400	0.36	+0.6
3,972,725	+	casA	OKFHMN_20400	0.40	+0.6
3,972,964	+	casA	OKFHMN_20400	0.55	+0.5
3,972,995	-	casA	OKFHMN_20400	0.57	-0.3
3,973,001	+	casA	OKFHMN_20400	0.58	-1.5
3,973,222	+	casA	OKFHMN_20400	0.72	-0.2
3,973,431	-	casA	OKFHMN_20400	0.85	+0.8
3,973,530	-				+1.4
3,973,661	+				+0.5
3,973,666	+				-0.3
3,973,667	-				+0.2
3,973,751	+	casB	OKFHMN_20405	0.18	-0.8
3,973,813	+	casB	OKFHMN_20405	0.29	-0.4
3,973,813	+	casB	OKFHMN_20405	0.29	+0.0
3,973,814	-	casB	OKFHMN_20405	0.29	+1.0
3,973,842	-	casB	OKFHMN_20405	0.35	-0.2
3,974,005	+	casB	OKFHMN_20405	0.65	-1.0
3,974,014	+	casB	OKFHMN_20405	0.67	+0.8
3,974,014	+	casB	OKFHMN_20405	0.67	-0.4
3,974,127	-	casB	OKFHMN_20405	0.88	+0.3
3,974,152	-				-0.4
3,974,152	-				-0.1
3,974,173	-				+0.3
3,974,387	-	cas7e	OKFHMN_20410	0.17	+0.3
3,974,407	+	cas7e	OKFHMN_20410	0.19	-0.9
3,974,428	+	cas7e	OKFHMN_20410	0.21	+0.6
3,974,429	-	cas7e	OKFHMN_20410	0.21	+0.6
3,974,559	+	cas7e	OKFHMN_20410	0.34	+0.2
3,974,559	+	cas7e	OKFHMN_20410	0.34	+0.4
3,974,566	+	cas7e	OKFHMN_20410	0.34	+0.1
3,974,592	+	cas7e	OKFHMN_20410	0.37	+0.6