Strain Fitness in Escherichia coli ECRC100 around OKFHMN_19235

Experiment: JK42

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JK42
3,735,547	-	yggM	OKFHMN_19225	0.31	+0.1
3,735,645	+	yggM	OKFHMN_19225	0.41	-0.1
3,735,650	-	yggM	OKFHMN_19225	0.41	-0.3
3,735,688	-	yggM	OKFHMN_19225	0.45	-0.5
3,735,823	-	yggM	OKFHMN_19225	0.59	-0.6
3,735,931	+	yggM	OKFHMN_19225	0.69	+0.7
3,735,976	+	yggM	OKFHMN_19225	0.74	+0.0
3,735,977	-	yggM	OKFHMN_19225	0.74	-0.2
3,736,182	+				-0.1
3,736,233	+				-0.2
3,736,234	-				+0.9
3,736,249	+				+0.2
3,736,249	+				-0.4
3,736,316	+				+0.4
3,736,422	+				+1.1
3,736,571	-				-0.3
3,736,628	+	hemW	OKFHMN_19235	0.13	+0.3
3,736,631	-	hemW	OKFHMN_19235	0.13	-0.9
3,736,840	+	hemW	OKFHMN_19235	0.31	-0.6
3,736,840	+	hemW	OKFHMN_19235	0.31	-0.0
3,736,841	-	hemW	OKFHMN_19235	0.32	-2.1
3,736,841	-	hemW	OKFHMN_19235	0.32	+0.3
3,736,841	-	hemW	OKFHMN_19235	0.32	-1.7
3,736,841	-	hemW	OKFHMN_19235	0.32	-0.2
3,736,898	-	hemW	OKFHMN_19235	0.37	-0.2
3,736,912	+	hemW	OKFHMN_19235	0.38	-0.5
3,737,016	-	hemW	OKFHMN_19235	0.47	-0.3
3,737,018	+	hemW	OKFHMN_19235	0.47	-0.6
3,737,018	+	hemW	OKFHMN_19235	0.47	-0.5
3,737,019	-	hemW	OKFHMN_19235	0.47	-0.7
3,737,038	+	hemW	OKFHMN_19235	0.49	+1.2
3,737,138	+	hemW	OKFHMN_19235	0.58	-0.1
3,737,139	-	hemW	OKFHMN_19235	0.58	-0.8
3,737,144	+	hemW	OKFHMN_19235	0.58	-0.5
3,737,148	+	hemW	OKFHMN_19235	0.59	-0.1
3,737,149	-	hemW	OKFHMN_19235	0.59	-0.3
3,737,204	+	hemW	OKFHMN_19235	0.64	+1.4
3,737,204	+	hemW	OKFHMN_19235	0.64	-0.6
3,737,205	-	hemW	OKFHMN_19235	0.64	+0.4
3,737,205	-	hemW	OKFHMN_19235	0.64	-1.1
3,737,259	-	hemW	OKFHMN_19235	0.68	-0.8
3,737,259	-	hemW	OKFHMN_19235	0.68	+0.3
3,737,304	+	hemW	OKFHMN_19235	0.72	-0.2
3,737,305	-	hemW	OKFHMN_19235	0.72	-1.1
3,737,330	+	hemW	OKFHMN_19235	0.75	-0.8
3,737,443	-	hemW	OKFHMN_19235	0.85	-0.5
3,737,487	-	hemW	OKFHMN_19235	0.88	+0.6
3,737,503	+	hemW	OKFHMN_19235	0.90	-0.1
3,737,590	+				+1.9
3,737,590	+				-0.4
3,737,591	-				-0.1
3,737,612	+				-0.2
3,737,619	+				-0.8
3,737,720	-	rdgB	OKFHMN_19240	0.18	-0.5
3,737,738	+	rdgB	OKFHMN_19240	0.21	+0.5
3,737,878	+	rdgB	OKFHMN_19240	0.45	-0.1
3,737,955	-	rdgB	OKFHMN_19240	0.58	-1.4
3,737,983	+	rdgB	OKFHMN_19240	0.63	-0.9
3,737,983	+	rdgB	OKFHMN_19240	0.63	-0.5
3,738,210	-				-3.2
3,738,210	-				+0.1
3,738,213	+				-0.8
3,738,214	-				-0.2
3,738,221	+				-0.8
3,738,265	+	yggU	OKFHMN_19245	0.18	+0.1
3,738,428	-	yggU	OKFHMN_19245	0.74	+1.3
3,738,428	-	yggU	OKFHMN_19245	0.74	-0.2
3,738,428	-	yggU	OKFHMN_19245	0.74	+1.1
3,738,456	+	yggU	OKFHMN_19245	0.84	-0.5
3,738,456	+	yggU	OKFHMN_19245	0.84	-0.0
3,738,457	-	yggU	OKFHMN_19245	0.84	-0.4
3,738,457	-	yggU	OKFHMN_19245	0.84	+0.4
3,738,503	-				+1.9
3,738,548	-				+0.4
3,738,548	-				+0.9
3,738,551	-				-0.7
3,738,551	-				-0.1
3,738,551	-				+0.7