Strain Fitness in Escherichia coli ECRC100 around OKFHMN_16310

Experiment: JK42

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JK42
3,175,731	+	hdeD	OKFHMN_16300	0.61	+0.3
3,175,783	+	hdeD	OKFHMN_16300	0.70	-0.8
3,175,787	-	hdeD	OKFHMN_16300	0.71	+0.3
3,175,787	-	hdeD	OKFHMN_16300	0.71	-0.1
3,175,795	+	hdeD	OKFHMN_16300	0.72	-0.7
3,175,796	-	hdeD	OKFHMN_16300	0.72	+0.6
3,175,796	-	hdeD	OKFHMN_16300	0.72	-0.9
3,175,798	+	hdeD	OKFHMN_16300	0.73	+0.2
3,175,939	-				-0.2
3,175,943	-				-0.2
3,175,944	+				-0.7
3,175,944	+				-0.2
3,175,946	+				+0.1
3,175,947	-				-0.4
3,175,947	-				-0.6
3,175,947	-				-0.2
3,175,949	-				+0.2
3,175,949	-				+0.4
3,175,949	-				-0.4
3,175,953	+				+0.6
3,175,954	-				+0.3
3,175,954	-				-0.1
3,175,973	-				-1.5
3,176,191	+				-0.8
3,176,192	-				+1.9
3,176,400	-	hdeA	OKFHMN_16305	0.58	+0.0
3,176,419	+	hdeA	OKFHMN_16305	0.63	-1.3
3,176,468	+	hdeA	OKFHMN_16305	0.78	+0.3
3,176,610	+				-0.4
3,176,625	+				-0.2
3,176,845	+	hdeB	OKFHMN_16310	0.59	+1.1
3,176,846	-	hdeB	OKFHMN_16310	0.60	+0.9
3,176,847	+	hdeB	OKFHMN_16310	0.60	+1.0
3,176,965	-				-1.8
3,177,066	-				+0.2
3,177,073	-				+0.9
3,177,073	-				-0.1
3,177,075	-				-0.8
3,177,152	+				+0.1
3,177,197	-	yhiD	OKFHMN_16315	0.14	-0.4
3,177,365	+	yhiD	OKFHMN_16315	0.43	-0.1
3,177,387	+	yhiD	OKFHMN_16315	0.47	-0.0
3,177,388	-	yhiD	OKFHMN_16315	0.47	+0.2
3,177,392	-	yhiD	OKFHMN_16315	0.48	-0.7
3,177,406	+	yhiD	OKFHMN_16315	0.50	+1.2
3,177,498	-	yhiD	OKFHMN_16315	0.66	+0.1
3,177,507	+	yhiD	OKFHMN_16315	0.68	+1.5
3,177,511	-	yhiD	OKFHMN_16315	0.68	+0.1
3,177,660	+				-0.9
3,177,687	+				+0.1
3,177,692	-				-1.4
3,177,700	+				+1.3
3,177,701	-				+0.2
3,177,731	+				+0.2
3,177,798	+				-0.3
3,177,842	-	chuV	OKFHMN_16320	0.13	+0.1
3,177,868	-	chuV	OKFHMN_16320	0.16	-0.9
3,177,890	-	chuV	OKFHMN_16320	0.19	+0.2
3,177,934	+	chuV	OKFHMN_16320	0.25	-0.3
3,177,967	+	chuV	OKFHMN_16320	0.29	-1.4