Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybdN and ybdM overlap by 28 nucleotides ybdM and ybdL are separated by 0 nucleotides
OKFHMN_07525: ybdN - Uncharacterized protein YbdN, at 1,355,264 to 1,356,484
ybdN
OKFHMN_07530: ybdM - Uncharacterized protein YbdM, at 1,356,457 to 1,357,086
ybdM
OKFHMN_07535: ybdL - methionine-oxo-acid transaminase, at 1,357,087 to 1,358,247
ybdL
Position (kb) 1356
1357
1358 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1355.482 kb on + strand, within ybdN at 1355.486 kb on + strand, within ybdN at 1355.487 kb on - strand, within ybdN at 1355.510 kb on + strand, within ybdN at 1355.579 kb on + strand, within ybdN at 1355.580 kb on - strand, within ybdN at 1355.580 kb on - strand, within ybdN at 1355.777 kb on + strand, within ybdN at 1355.778 kb on - strand, within ybdN at 1355.842 kb on + strand, within ybdN at 1355.863 kb on + strand, within ybdN at 1355.863 kb on + strand, within ybdN at 1355.863 kb on + strand, within ybdN at 1355.863 kb on + strand, within ybdN at 1355.863 kb on + strand, within ybdN at 1355.864 kb on - strand, within ybdN at 1355.952 kb on - strand, within ybdN at 1355.953 kb on + strand, within ybdN at 1355.958 kb on + strand, within ybdN at 1355.964 kb on - strand, within ybdN at 1355.989 kb on + strand, within ybdN at 1356.171 kb on + strand, within ybdN at 1356.171 kb on + strand, within ybdN at 1356.185 kb on + strand, within ybdN at 1356.345 kb on + strand, within ybdN at 1356.358 kb on - strand, within ybdN at 1356.416 kb on + strand at 1356.426 kb on - strand at 1356.438 kb on + strand at 1356.630 kb on + strand, within ybdM at 1356.636 kb on + strand, within ybdM at 1356.643 kb on + strand, within ybdM at 1356.643 kb on + strand, within ybdM at 1356.644 kb on - strand, within ybdM at 1356.644 kb on - strand, within ybdM at 1356.701 kb on + strand, within ybdM at 1356.789 kb on + strand, within ybdM at 1356.818 kb on + strand, within ybdM at 1356.819 kb on - strand, within ybdM at 1356.852 kb on + strand, within ybdM at 1357.027 kb on - strand at 1357.089 kb on - strand at 1357.290 kb on - strand, within ybdL at 1357.331 kb on - strand, within ybdL at 1357.331 kb on - strand, within ybdL at 1357.331 kb on - strand, within ybdL at 1357.340 kb on - strand, within ybdL at 1357.386 kb on - strand, within ybdL at 1357.405 kb on + strand, within ybdL at 1357.405 kb on + strand, within ybdL at 1357.406 kb on - strand, within ybdL at 1357.465 kb on + strand, within ybdL at 1357.530 kb on + strand, within ybdL at 1357.535 kb on + strand, within ybdL at 1357.535 kb on + strand, within ybdL at 1357.834 kb on + strand, within ybdL at 1357.865 kb on + strand, within ybdL at 1357.866 kb on - strand, within ybdL at 1357.998 kb on - strand, within ybdL
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 1,355,482 + ybdN OKFHMN_07525 0.18 -0.3 1,355,486 + ybdN OKFHMN_07525 0.18 -0.8 1,355,487 - ybdN OKFHMN_07525 0.18 -0.7 1,355,510 + ybdN OKFHMN_07525 0.20 -0.3 1,355,579 + ybdN OKFHMN_07525 0.26 -0.1 1,355,580 - ybdN OKFHMN_07525 0.26 +0.7 1,355,580 - ybdN OKFHMN_07525 0.26 -0.4 1,355,777 + ybdN OKFHMN_07525 0.42 -1.3 1,355,778 - ybdN OKFHMN_07525 0.42 -0.4 1,355,842 + ybdN OKFHMN_07525 0.47 +0.0 1,355,863 + ybdN OKFHMN_07525 0.49 +0.7 1,355,863 + ybdN OKFHMN_07525 0.49 +0.1 1,355,863 + ybdN OKFHMN_07525 0.49 -0.2 1,355,863 + ybdN OKFHMN_07525 0.49 -0.6 1,355,863 + ybdN OKFHMN_07525 0.49 +1.2 1,355,864 - ybdN OKFHMN_07525 0.49 -0.3 1,355,952 - ybdN OKFHMN_07525 0.56 -0.4 1,355,953 + ybdN OKFHMN_07525 0.56 +1.0 1,355,958 + ybdN OKFHMN_07525 0.57 +0.4 1,355,964 - ybdN OKFHMN_07525 0.57 +0.6 1,355,989 + ybdN OKFHMN_07525 0.59 -0.3 1,356,171 + ybdN OKFHMN_07525 0.74 -0.6 1,356,171 + ybdN OKFHMN_07525 0.74 +0.5 1,356,185 + ybdN OKFHMN_07525 0.75 -0.3 1,356,345 + ybdN OKFHMN_07525 0.89 +0.1 1,356,358 - ybdN OKFHMN_07525 0.90 -2.2 1,356,416 + +2.0 1,356,426 - +0.1 1,356,438 + +0.5 1,356,630 + ybdM OKFHMN_07530 0.27 +0.7 1,356,636 + ybdM OKFHMN_07530 0.28 +0.3 1,356,643 + ybdM OKFHMN_07530 0.30 +0.5 1,356,643 + ybdM OKFHMN_07530 0.30 +0.1 1,356,644 - ybdM OKFHMN_07530 0.30 -0.9 1,356,644 - ybdM OKFHMN_07530 0.30 -0.8 1,356,701 + ybdM OKFHMN_07530 0.39 +0.7 1,356,789 + ybdM OKFHMN_07530 0.53 -0.6 1,356,818 + ybdM OKFHMN_07530 0.57 -1.6 1,356,819 - ybdM OKFHMN_07530 0.57 +2.0 1,356,852 + ybdM OKFHMN_07530 0.63 +1.7 1,357,027 - +0.0 1,357,089 - +0.7 1,357,290 - ybdL OKFHMN_07535 0.17 -0.1 1,357,331 - ybdL OKFHMN_07535 0.21 -0.6 1,357,331 - ybdL OKFHMN_07535 0.21 +0.4 1,357,331 - ybdL OKFHMN_07535 0.21 +1.3 1,357,340 - ybdL OKFHMN_07535 0.22 +0.7 1,357,386 - ybdL OKFHMN_07535 0.26 +0.7 1,357,405 + ybdL OKFHMN_07535 0.27 +0.4 1,357,405 + ybdL OKFHMN_07535 0.27 +0.2 1,357,406 - ybdL OKFHMN_07535 0.27 +0.0 1,357,465 + ybdL OKFHMN_07535 0.33 -0.7 1,357,530 + ybdL OKFHMN_07535 0.38 +0.2 1,357,535 + ybdL OKFHMN_07535 0.39 -0.5 1,357,535 + ybdL OKFHMN_07535 0.39 -1.9 1,357,834 + ybdL OKFHMN_07535 0.64 -0.1 1,357,865 + ybdL OKFHMN_07535 0.67 -0.4 1,357,866 - ybdL OKFHMN_07535 0.67 -0.5 1,357,998 - ybdL OKFHMN_07535 0.78 -0.4
Or see this region's nucleotide sequence