Strain Fitness in Escherichia coli ECRC100 around OKFHMN_07040

Experiment: JK42

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnp-ISAs1 and OKFHMN_07040 are separated by 3 nucleotides OKFHMN_07035: tnp-ISAs1 - ISAs1 family transposase, at 1,257,806 to 1,258,879 tnp-ISAs1 OKFHMN_07040: OKFHMN_07040 - Bacteriophage N4 adsorption protein B, at 1,258,883 to 1,258,942 _07040 Position (kb) 1258 1259Strain fitness (log2 ratio) -1 0 1at 1259.240 kb on + strandat 1259.720 kb on + strandat 1259.823 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction JK42
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1,259,240 + +0.3
1,259,720 + -1.0
1,259,823 + +0.6

Or see this region's nucleotide sequence