Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt clsB and ybhN overlap by 1 nucleotides ybhN and ybhM are separated by 35 nucleotides ybhM and ybhL are separated by 207 nucleotides
OKFHMN_06330: clsB - cardiolipin synthase ClsB, at 1,127,168 to 1,128,409
clsB
OKFHMN_06335: ybhN - Inner membrane protein YbhN, at 1,128,409 to 1,129,365
ybhN
OKFHMN_06340: ybhM - Uncharacterized protein YbhM, at 1,129,401 to 1,130,114
ybhM
OKFHMN_06345: ybhL - Inner membrane protein YbhL, at 1,130,322 to 1,131,026
ybhL
Position (kb) 1129
1130
1131 Strain fitness (log2 ratio) -1
0
1
2
3 at 1128.544 kb on + strand, within ybhN at 1128.802 kb on - strand, within ybhN at 1128.822 kb on + strand, within ybhN at 1128.840 kb on + strand, within ybhN at 1128.847 kb on - strand, within ybhN at 1128.903 kb on + strand, within ybhN at 1129.116 kb on - strand, within ybhN at 1129.221 kb on + strand, within ybhN at 1129.221 kb on + strand, within ybhN at 1129.222 kb on - strand, within ybhN at 1129.222 kb on - strand, within ybhN at 1129.371 kb on - strand at 1129.375 kb on - strand at 1129.506 kb on - strand, within ybhM at 1129.589 kb on + strand, within ybhM at 1129.861 kb on - strand, within ybhM at 1129.924 kb on - strand, within ybhM at 1130.436 kb on - strand, within ybhL at 1130.635 kb on + strand, within ybhL at 1130.642 kb on - strand, within ybhL at 1130.685 kb on - strand, within ybhL at 1130.706 kb on - strand, within ybhL at 1130.707 kb on + strand, within ybhL at 1130.732 kb on + strand, within ybhL at 1130.954 kb on - strand, within ybhL at 1130.966 kb on + strand at 1130.968 kb on + strand at 1130.968 kb on + strand at 1131.044 kb on - strand at 1131.052 kb on + strand at 1131.057 kb on + strand at 1131.057 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 1,128,544 + ybhN OKFHMN_06335 0.14 -0.4 1,128,802 - ybhN OKFHMN_06335 0.41 -1.0 1,128,822 + ybhN OKFHMN_06335 0.43 +1.2 1,128,840 + ybhN OKFHMN_06335 0.45 -0.2 1,128,847 - ybhN OKFHMN_06335 0.46 +0.6 1,128,903 + ybhN OKFHMN_06335 0.52 +0.5 1,129,116 - ybhN OKFHMN_06335 0.74 +2.1 1,129,221 + ybhN OKFHMN_06335 0.85 +0.7 1,129,221 + ybhN OKFHMN_06335 0.85 -1.2 1,129,222 - ybhN OKFHMN_06335 0.85 +0.9 1,129,222 - ybhN OKFHMN_06335 0.85 -0.7 1,129,371 - +1.0 1,129,375 - +1.6 1,129,506 - ybhM OKFHMN_06340 0.15 +0.8 1,129,589 + ybhM OKFHMN_06340 0.26 -0.3 1,129,861 - ybhM OKFHMN_06340 0.64 -0.1 1,129,924 - ybhM OKFHMN_06340 0.73 -0.7 1,130,436 - ybhL OKFHMN_06345 0.16 +0.9 1,130,635 + ybhL OKFHMN_06345 0.44 +0.6 1,130,642 - ybhL OKFHMN_06345 0.45 -0.0 1,130,685 - ybhL OKFHMN_06345 0.51 +0.6 1,130,706 - ybhL OKFHMN_06345 0.54 -0.4 1,130,707 + ybhL OKFHMN_06345 0.55 +2.8 1,130,732 + ybhL OKFHMN_06345 0.58 +0.6 1,130,954 - ybhL OKFHMN_06345 0.90 +0.6 1,130,966 + -0.5 1,130,968 + -0.2 1,130,968 + +2.2 1,131,044 - +0.4 1,131,052 + +0.9 1,131,057 + -0.4 1,131,057 + +0.3
Or see this region's nucleotide sequence