Strain Fitness in Escherichia coli ECRC100 around OKFHMN_05460

Experiment: JK42

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmsbA and ycaI are separated by 36 nucleotidesycaI and ihfB are separated by 206 nucleotidesihfB and rpsA are separated by 159 nucleotides OKFHMN_05455: msbA - lipid A ABC transporter ATP-binding protein/permease MsbA, at 918,157 to 919,905 msbA OKFHMN_05460: ycaI - ComEC family protein, at 919,942 to 922,206 ycaI OKFHMN_05465: ihfB - integration host factor subunit beta, at 922,413 to 922,697 ihfB OKFHMN_05470: rpsA - 30S ribosomal protein S1, at 922,857 to 924,530 rpsA Position (kb) 919 920 921 922 923Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 920.067 kb on + strandat 920.079 kb on + strandat 920.080 kb on - strandat 920.380 kb on + strand, within ycaIat 920.493 kb on + strand, within ycaIat 920.493 kb on + strand, within ycaIat 920.493 kb on + strand, within ycaIat 920.702 kb on + strand, within ycaIat 920.702 kb on + strand, within ycaIat 920.702 kb on + strand, within ycaIat 920.703 kb on - strand, within ycaIat 920.703 kb on - strand, within ycaIat 920.800 kb on + strand, within ycaIat 921.006 kb on + strand, within ycaIat 921.031 kb on + strand, within ycaIat 921.042 kb on + strand, within ycaIat 921.283 kb on + strand, within ycaIat 921.284 kb on - strand, within ycaIat 921.319 kb on + strand, within ycaIat 921.325 kb on - strand, within ycaIat 921.325 kb on - strand, within ycaIat 921.331 kb on - strand, within ycaIat 921.425 kb on - strand, within ycaIat 921.607 kb on + strand, within ycaIat 921.669 kb on - strand, within ycaIat 921.781 kb on - strand, within ycaIat 921.890 kb on - strand, within ycaIat 921.891 kb on + strand, within ycaIat 922.025 kb on - strandat 922.062 kb on - strandat 922.093 kb on + strandat 922.602 kb on - strand, within ihfB

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Per-strain Table

Position Strand Gene LocusTag Fraction JK42
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920,067 + -1.6
920,079 + -0.3
920,080 - -0.9
920,380 + ycaI OKFHMN_05460 0.19 -0.3
920,493 + ycaI OKFHMN_05460 0.24 -0.4
920,493 + ycaI OKFHMN_05460 0.24 -0.0
920,493 + ycaI OKFHMN_05460 0.24 +0.7
920,702 + ycaI OKFHMN_05460 0.34 -0.4
920,702 + ycaI OKFHMN_05460 0.34 +0.8
920,702 + ycaI OKFHMN_05460 0.34 -2.9
920,703 - ycaI OKFHMN_05460 0.34 +2.2
920,703 - ycaI OKFHMN_05460 0.34 +0.6
920,800 + ycaI OKFHMN_05460 0.38 -0.7
921,006 + ycaI OKFHMN_05460 0.47 -0.5
921,031 + ycaI OKFHMN_05460 0.48 +1.6
921,042 + ycaI OKFHMN_05460 0.49 +0.1
921,283 + ycaI OKFHMN_05460 0.59 +0.1
921,284 - ycaI OKFHMN_05460 0.59 +1.2
921,319 + ycaI OKFHMN_05460 0.61 +0.4
921,325 - ycaI OKFHMN_05460 0.61 +1.6
921,325 - ycaI OKFHMN_05460 0.61 -0.0
921,331 - ycaI OKFHMN_05460 0.61 +0.8
921,425 - ycaI OKFHMN_05460 0.65 +1.6
921,607 + ycaI OKFHMN_05460 0.74 +1.0
921,669 - ycaI OKFHMN_05460 0.76 -1.1
921,781 - ycaI OKFHMN_05460 0.81 +0.6
921,890 - ycaI OKFHMN_05460 0.86 -1.4
921,891 + ycaI OKFHMN_05460 0.86 -0.1
922,025 - +1.6
922,062 - -0.0
922,093 + -1.2
922,602 - ihfB OKFHMN_05465 0.66 +1.6

Or see this region's nucleotide sequence