Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04725

Experiment: JK42

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttorS and yccM are separated by 71 nucleotidesyccM and cspG are separated by 614 nucleotides OKFHMN_04720: torS - TMAO reductase system sensor histidine kinase/response regulator TorS, at 781,540 to 784,239 torS OKFHMN_04725: yccM - Putative electron transport protein YccM, at 784,311 to 785,384 yccM OKFHMN_04730: cspG - cold shock protein CspG, at 785,999 to 786,211 cspG Position (kb) 784 785 786Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 783.912 kb on - strand, within torSat 784.444 kb on - strand, within yccMat 784.496 kb on + strand, within yccMat 784.497 kb on - strand, within yccMat 784.588 kb on + strand, within yccMat 784.781 kb on - strand, within yccMat 784.850 kb on + strand, within yccMat 784.907 kb on + strand, within yccMat 784.983 kb on + strand, within yccMat 785.119 kb on + strand, within yccMat 785.165 kb on - strand, within yccMat 785.305 kb on - strandat 785.459 kb on - strandat 785.689 kb on + strandat 785.742 kb on + strandat 785.802 kb on - strandat 785.837 kb on - strandat 786.000 kb on + strandat 786.001 kb on - strandat 786.011 kb on + strandat 786.011 kb on + strandat 786.012 kb on - strandat 786.271 kb on - strandat 786.271 kb on - strandat 786.337 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction JK42
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783,912 - torS OKFHMN_04720 0.88 -0.2
784,444 - yccM OKFHMN_04725 0.12 -0.4
784,496 + yccM OKFHMN_04725 0.17 -1.0
784,497 - yccM OKFHMN_04725 0.17 -0.8
784,588 + yccM OKFHMN_04725 0.26 +0.9
784,781 - yccM OKFHMN_04725 0.44 +0.2
784,850 + yccM OKFHMN_04725 0.50 -0.6
784,907 + yccM OKFHMN_04725 0.55 -0.6
784,983 + yccM OKFHMN_04725 0.63 +0.9
785,119 + yccM OKFHMN_04725 0.75 +0.4
785,165 - yccM OKFHMN_04725 0.80 +0.7
785,305 - -1.6
785,459 - +0.2
785,689 + +1.1
785,742 + -0.8
785,802 - -3.5
785,837 - -1.1
786,000 + +0.0
786,001 - -1.3
786,011 + +0.6
786,011 + +0.4
786,012 - +1.3
786,271 - -0.1
786,271 - -0.6
786,337 - +2.2

Or see this region's nucleotide sequence