Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04695

Experiment: JK42

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcbpA and cbpM overlap by 1 nucleotidescbpM and torD are separated by 153 nucleotidestorD and torA overlap by 4 nucleotides OKFHMN_04680: cbpA - curved DNA-binding protein, at 773,896 to 774,816 cbpA OKFHMN_04685: cbpM - chaperone modulator CbpM, at 774,816 to 775,121 cbpM OKFHMN_04695: torD - molecular chaperone TorD, at 775,275 to 775,874 torD OKFHMN_04700: torA - trimethylamine-N-oxide reductase TorA, at 775,871 to 778,417 torA Position (kb) 775 776Strain fitness (log2 ratio) -1 0 1at 774.316 kb on + strand, within cbpAat 774.573 kb on + strand, within cbpAat 774.814 kb on + strandat 774.827 kb on + strandat 774.839 kb on + strandat 774.842 kb on + strandat 775.109 kb on - strandat 775.303 kb on - strandat 775.303 kb on - strandat 775.314 kb on + strandat 775.585 kb on + strand, within torDat 775.677 kb on + strand, within torDat 775.849 kb on - strandat 776.272 kb on + strand, within torAat 776.275 kb on - strand, within torAat 776.356 kb on - strand, within torAat 776.695 kb on + strand, within torA

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Per-strain Table

Position Strand Gene LocusTag Fraction JK42
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774,316 + cbpA OKFHMN_04680 0.46 -0.1
774,573 + cbpA OKFHMN_04680 0.74 -0.4
774,814 + -0.4
774,827 + -0.1
774,839 + +0.1
774,842 + +0.2
775,109 - -0.2
775,303 - -1.0
775,303 - -1.0
775,314 + -1.2
775,585 + torD OKFHMN_04695 0.52 -1.2
775,677 + torD OKFHMN_04695 0.67 +0.9
775,849 - +0.0
776,272 + torA OKFHMN_04700 0.16 -0.4
776,275 - torA OKFHMN_04700 0.16 +0.5
776,356 - torA OKFHMN_04700 0.19 -0.9
776,695 + torA OKFHMN_04700 0.32 -0.2

Or see this region's nucleotide sequence