Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04590

Experiment: JK42

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_04585 and OKFHMN_04590 are separated by 999 nucleotidesOKFHMN_04590 and putP are separated by 148 nucleotides OKFHMN_04585: OKFHMN_04585 - hypothetical protein, at 754,463 to 754,609 _04585 OKFHMN_04590: OKFHMN_04590 - hypothetical protein, at 755,609 to 756,952 _04590 OKFHMN_04595: putP - sodium/proline symporter PutP, at 757,101 to 758,609 putP Position (kb) 755 756 757Strain fitness (log2 ratio) -1 0 1at 755.514 kb on + strandat 755.648 kb on + strandat 755.719 kb on + strandat 755.990 kb on - strand, within OKFHMN_04590at 756.282 kb on + strand, within OKFHMN_04590at 756.338 kb on + strand, within OKFHMN_04590at 756.405 kb on + strand, within OKFHMN_04590at 756.442 kb on + strand, within OKFHMN_04590at 756.524 kb on + strand, within OKFHMN_04590at 756.548 kb on - strand, within OKFHMN_04590at 756.739 kb on - strand, within OKFHMN_04590at 756.770 kb on - strand, within OKFHMN_04590at 757.004 kb on + strandat 757.004 kb on + strandat 757.004 kb on + strandat 757.086 kb on + strandat 757.087 kb on - strandat 757.087 kb on - strandat 757.538 kb on - strand, within putPat 757.584 kb on + strand, within putPat 757.788 kb on - strand, within putPat 757.926 kb on - strand, within putP

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Per-strain Table

Position Strand Gene LocusTag Fraction JK42
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755,514 + +0.6
755,648 + +0.6
755,719 + +0.4
755,990 - OKFHMN_04590 0.28 -0.8
756,282 + OKFHMN_04590 0.50 -1.4
756,338 + OKFHMN_04590 0.54 +0.3
756,405 + OKFHMN_04590 0.59 -0.0
756,442 + OKFHMN_04590 0.62 -0.1
756,524 + OKFHMN_04590 0.68 +0.2
756,548 - OKFHMN_04590 0.70 -0.5
756,739 - OKFHMN_04590 0.84 +0.6
756,770 - OKFHMN_04590 0.86 -0.7
757,004 + +0.1
757,004 + -1.3
757,004 + +0.3
757,086 + +0.3
757,087 - +0.4
757,087 - +0.2
757,538 - putP OKFHMN_04595 0.29 +0.6
757,584 + putP OKFHMN_04595 0.32 +1.6
757,788 - putP OKFHMN_04595 0.46 +0.4
757,926 - putP OKFHMN_04595 0.55 +0.0

Or see this region's nucleotide sequence