Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04275

Experiment: JK42

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntureG and ureF are separated by 11 nucleotidesureF and ureE are separated by 0 nucleotidesureE and ureC are separated by 9 nucleotides OKFHMN_04265: ureG - urease accessory protein UreG, at 682,039 to 682,656 ureG OKFHMN_04270: ureF - Urease accessory protein UreF, at 682,668 to 683,342 ureF OKFHMN_04275: ureE - urease accessory protein UreE, at 683,343 to 683,807 ureE OKFHMN_04280: ureC - urease subunit alpha, at 683,817 to 685,520 ureC Position (kb) 683 684Strain fitness (log2 ratio) -1 0 1at 682.649 kb on - strandat 682.718 kb on + strandat 682.719 kb on - strandat 682.808 kb on + strand, within ureFat 682.809 kb on - strand, within ureFat 682.812 kb on + strand, within ureFat 682.972 kb on - strand, within ureFat 683.486 kb on - strand, within ureEat 683.717 kb on + strand, within ureEat 683.800 kb on + strandat 683.818 kb on + strandat 683.818 kb on + strandat 683.922 kb on - strandat 684.293 kb on + strand, within ureCat 684.294 kb on - strand, within ureCat 684.610 kb on + strand, within ureCat 684.611 kb on - strand, within ureCat 684.720 kb on - strand, within ureCat 684.776 kb on + strand, within ureC

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Per-strain Table

Position Strand Gene LocusTag Fraction JK42
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682,649 - -0.2
682,718 + +1.6
682,719 - -0.8
682,808 + ureF OKFHMN_04270 0.21 +0.3
682,809 - ureF OKFHMN_04270 0.21 +0.8
682,812 + ureF OKFHMN_04270 0.21 -0.7
682,972 - ureF OKFHMN_04270 0.45 +0.7
683,486 - ureE OKFHMN_04275 0.31 +0.6
683,717 + ureE OKFHMN_04275 0.80 -0.3
683,800 + +0.3
683,818 + +0.5
683,818 + -0.7
683,922 - -0.6
684,293 + ureC OKFHMN_04280 0.28 +0.4
684,294 - ureC OKFHMN_04280 0.28 +0.9
684,610 + ureC OKFHMN_04280 0.47 +1.0
684,611 - ureC OKFHMN_04280 0.47 +0.2
684,720 - ureC OKFHMN_04280 0.53 +0.5
684,776 + ureC OKFHMN_04280 0.56 -0.1

Or see this region's nucleotide sequence