Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjiC and alpA are separated by 729 nucleotides alpA and OKFHMN_04085 are separated by 564 nucleotides OKFHMN_04085 and OKFHMN_04090 are separated by 88 nucleotides
OKFHMN_04075: yjiC - glucosyl transferase, at 650,139 to 651,263
yjiC
OKFHMN_04080: alpA - AlpA family transcriptional regulator, at 651,993 to 652,190
alpA
OKFHMN_04085: OKFHMN_04085 - Oligogalacturonate-specific porin protein KdgM, at 652,755 to 653,027
_04085
OKFHMN_04090: OKFHMN_04090 - hypothetical protein, at 653,116 to 653,295
_04090
Position (kb) 651
652
653 Strain fitness (log2 ratio) -1
0
1 at 651.603 kb on - strand at 651.667 kb on + strand at 651.919 kb on - strand at 652.021 kb on + strand, within alpA at 652.123 kb on + strand, within alpA at 652.369 kb on + strand at 652.373 kb on + strand at 652.507 kb on + strand at 652.508 kb on - strand at 652.527 kb on - strand at 652.538 kb on + strand at 652.539 kb on - strand at 652.615 kb on + strand at 652.646 kb on + strand at 652.718 kb on + strand at 652.756 kb on + strand at 653.111 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 651,603 - +0.0 651,667 + +0.8 651,919 - -0.7 652,021 + alpA OKFHMN_04080 0.14 +0.4 652,123 + alpA OKFHMN_04080 0.66 -1.0 652,369 + +0.0 652,373 + -0.5 652,507 + -0.7 652,508 - +0.2 652,527 - -0.3 652,538 + -0.4 652,539 - -0.1 652,615 + +0.3 652,646 + +0.2 652,718 + +0.6 652,756 + +1.0 653,111 + -0.6
Or see this region's nucleotide sequence