Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_03400 and OKFHMN_03405 are separated by 237 nucleotides OKFHMN_03405 and OKFHMN_03410 are separated by 114 nucleotides OKFHMN_03410 and OKFHMN_03415 are separated by 177 nucleotides OKFHMN_03415 and OKFHMN_03420 are separated by 61 nucleotides OKFHMN_03420 and OKFHMN_03425 overlap by 32 nucleotides
OKFHMN_03400: OKFHMN_03400 - Prophage repressor RacR, at 530,973 to 531,449
_03400
OKFHMN_03405: OKFHMN_03405 - DUF1391 domain-containing protein, at 531,687 to 531,917
_03405
OKFHMN_03410: OKFHMN_03410 - hypothetical protein, at 532,032 to 532,547
_03410
OKFHMN_03415: OKFHMN_03415 - 3'-5' exoribonuclease, at 532,725 to 533,069
_03415
OKFHMN_03420: OKFHMN_03420 - excisionase, at 533,131 to 533,400
_03420
OKFHMN_03425: OKFHMN_03425 - integrase, at 533,369 to 534,487
_03425
Position (kb) 532
533 Strain fitness (log2 ratio) -1
0
1 at 531.453 kb on + strand at 531.453 kb on + strand at 531.453 kb on + strand at 531.500 kb on + strand at 531.630 kb on - strand at 531.849 kb on + strand, within OKFHMN_03405 at 532.231 kb on - strand, within OKFHMN_03410 at 532.299 kb on - strand, within OKFHMN_03410 at 532.300 kb on + strand, within OKFHMN_03410 at 532.372 kb on + strand, within OKFHMN_03410 at 532.373 kb on - strand, within OKFHMN_03410 at 532.415 kb on + strand, within OKFHMN_03410 at 532.534 kb on - strand at 533.097 kb on + strand at 533.274 kb on - strand, within OKFHMN_03420 at 533.544 kb on + strand, within OKFHMN_03425
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 531,453 + -0.1 531,453 + -0.2 531,453 + +1.5 531,500 + +0.9 531,630 - +0.5 531,849 + OKFHMN_03405 0.70 +1.0 532,231 - OKFHMN_03410 0.39 +0.5 532,299 - OKFHMN_03410 0.52 -0.8 532,300 + OKFHMN_03410 0.52 +0.2 532,372 + OKFHMN_03410 0.66 -0.0 532,373 - OKFHMN_03410 0.66 -0.5 532,415 + OKFHMN_03410 0.74 +1.5 532,534 - -0.5 533,097 + +0.1 533,274 - OKFHMN_03420 0.53 -0.7 533,544 + OKFHMN_03425 0.16 +0.5
Or see this region's nucleotide sequence