Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lapB and lapA are separated by 6 nucleotides lapA and pgpB are separated by 148 nucleotides pgpB and ribA are separated by 169 nucleotides ribA and acnA are separated by 63 nucleotides
OKFHMN_02555: lapB - lipopolysaccharide assembly protein LapB, at 402,481 to 403,650
lapB
OKFHMN_02560: lapA - lipopolysaccharide assembly protein LapA, at 403,657 to 403,965
lapA
OKFHMN_02565: pgpB - phosphatidylglycerophosphatase B, at 404,114 to 404,878
pgpB
OKFHMN_02570: ribA - GTP cyclohydrolase-2, at 405,048 to 405,638
ribA
OKFHMN_02575: acnA - aconitate hydratase AcnA, at 405,702 to 408,377
acnA
Position (kb) 404
405 Strain fitness (log2 ratio) -1
0
1 at 403.865 kb on - strand, within lapA at 403.969 kb on - strand at 404.028 kb on - strand at 404.234 kb on - strand, within pgpB at 404.237 kb on + strand, within pgpB at 404.238 kb on - strand, within pgpB at 404.896 kb on - strand at 404.910 kb on + strand at 405.637 kb on - strand at 405.714 kb on - strand at 405.727 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 403,865 - lapA OKFHMN_02560 0.67 -0.5 403,969 - -1.1 404,028 - -0.4 404,234 - pgpB OKFHMN_02565 0.16 +0.2 404,237 + pgpB OKFHMN_02565 0.16 +0.4 404,238 - pgpB OKFHMN_02565 0.16 -0.1 404,896 - +0.3 404,910 + +0.4 405,637 - -0.8 405,714 - +0.0 405,727 + +0.2
Or see this region's nucleotide sequence