Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01655

Experiment: JK42

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydcJ and ydcI are separated by 216 nucleotidesydcI and trg are separated by 37 nucleotides OKFHMN_01650: ydcJ - Uncharacterized protein YdcJ, at 236,926 to 238,269 ydcJ OKFHMN_01655: ydcI - Uncharacterized HTH-type transcriptional regulator YdcI, at 238,486 to 239,409 ydcI OKFHMN_01660: trg - methyl-accepting chemotaxis protein Trg, at 239,447 to 241,087 trg Position (kb) 238 239 240Strain fitness (log2 ratio) -1 0 1at 238.293 kb on - strandat 238.337 kb on + strandat 238.370 kb on - strandat 238.622 kb on + strand, within ydcIat 238.623 kb on - strand, within ydcIat 238.779 kb on + strand, within ydcIat 238.780 kb on - strand, within ydcIat 238.782 kb on + strand, within ydcIat 238.844 kb on + strand, within ydcIat 239.060 kb on + strand, within ydcIat 239.096 kb on + strand, within ydcIat 239.141 kb on + strand, within ydcIat 239.211 kb on + strand, within ydcIat 239.227 kb on + strand, within ydcIat 239.702 kb on - strand, within trgat 239.702 kb on - strand, within trgat 240.091 kb on - strand, within trgat 240.309 kb on - strand, within trg

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Per-strain Table

Position Strand Gene LocusTag Fraction JK42
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238,293 - -0.0
238,337 + +1.4
238,370 - -0.3
238,622 + ydcI OKFHMN_01655 0.15 -1.0
238,623 - ydcI OKFHMN_01655 0.15 -1.1
238,779 + ydcI OKFHMN_01655 0.32 +1.4
238,780 - ydcI OKFHMN_01655 0.32 -0.6
238,782 + ydcI OKFHMN_01655 0.32 +0.2
238,844 + ydcI OKFHMN_01655 0.39 -0.1
239,060 + ydcI OKFHMN_01655 0.62 -0.7
239,096 + ydcI OKFHMN_01655 0.66 -0.3
239,141 + ydcI OKFHMN_01655 0.71 +0.3
239,211 + ydcI OKFHMN_01655 0.78 +0.4
239,227 + ydcI OKFHMN_01655 0.80 -1.0
239,702 - trg OKFHMN_01660 0.16 -0.3
239,702 - trg OKFHMN_01660 0.16 -1.1
240,091 - trg OKFHMN_01660 0.39 +1.4
240,309 - trg OKFHMN_01660 0.53 -1.1

Or see this region's nucleotide sequence