Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01410

Experiment: JK42

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_01400 and OKFHMN_01405 are separated by 122 nucleotidesOKFHMN_01405 and espR1 are separated by 62 nucleotidesespR1 and narU are separated by 305 nucleotides OKFHMN_01400: OKFHMN_01400 - IpaH-like protein, at 184,875 to 185,378 _01400 OKFHMN_01405: OKFHMN_01405 - leucine Rich Repeat family protein, at 185,501 to 186,133 _01405 OKFHMN_01410: espR1 - T3SS effector leucine-rich repeat protein EspR1, at 186,196 to 187,455 espR1 OKFHMN_01415: narU - nitrate/nitrite transporter NarU, at 187,761 to 189,149 narU Position (kb) 186 187 188Strain fitness (log2 ratio) -1 0 1at 185.653 kb on - strand, within OKFHMN_01405at 187.153 kb on - strand, within espR1at 188.153 kb on + strand, within narU

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Per-strain Table

Position Strand Gene LocusTag Fraction JK42
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185,653 - OKFHMN_01405 0.24 -0.3
187,153 - espR1 OKFHMN_01410 0.76 +0.3
188,153 + narU OKFHMN_01415 0.28 +1.1

Or see this region's nucleotide sequence