Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01105

Experiment: JK42

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyneK and yneK are separated by 78 nucleotidesyneK and yneJ are separated by 77 nucleotidesyneJ and sad are separated by 100 nucleotides OKFHMN_01095: yneK - putative protein YneK, at 107,318 to 107,566 yneK OKFHMN_01100: yneK - putative protein YneK, at 107,645 to 108,433 yneK OKFHMN_01105: yneJ - Uncharacterized HTH-type transcriptional regulator YneJ, at 108,511 to 109,392 yneJ OKFHMN_01110: sad - succinate-semialdehyde dehydrogenase, at 109,493 to 110,881 sad Position (kb) 108 109 110Strain fitness (log2 ratio) -1 0 1at 109.258 kb on + strand, within yneJat 109.477 kb on + strandat 109.646 kb on + strand, within sadat 109.855 kb on + strand, within sadat 109.856 kb on - strand, within sadat 109.891 kb on + strand, within sadat 109.962 kb on - strand, within sadat 109.965 kb on + strand, within sadat 109.969 kb on + strand, within sadat 110.046 kb on + strand, within sadat 110.048 kb on + strand, within sadat 110.048 kb on + strand, within sad

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction JK42
remove
109,258 + yneJ OKFHMN_01105 0.85 -0.9
109,477 + +0.4
109,646 + sad OKFHMN_01110 0.11 +0.4
109,855 + sad OKFHMN_01110 0.26 +0.8
109,856 - sad OKFHMN_01110 0.26 -0.2
109,891 + sad OKFHMN_01110 0.29 +0.8
109,962 - sad OKFHMN_01110 0.34 -0.0
109,965 + sad OKFHMN_01110 0.34 +1.4
109,969 + sad OKFHMN_01110 0.34 -0.1
110,046 + sad OKFHMN_01110 0.40 +0.1
110,048 + sad OKFHMN_01110 0.40 +0.4
110,048 + sad OKFHMN_01110 0.40 -0.9

Or see this region's nucleotide sequence