Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt eamA and marB are separated by 30 nucleotides marB and marA are separated by 31 nucleotides marA and marR are separated by 19 nucleotides marR and marC are separated by 211 nucleotides marC and ydeA are separated by 24 nucleotides
OKFHMN_01065: eamA - O-acetylserine/cysteine exporter, at 103,058 to 103,957
eamA
OKFHMN_01070: marB - multiple antibiotic resistance protein MarB, at 103,988 to 104,206
marB
OKFHMN_01075: marA - MDR efflux pump AcrAB transcriptional activator MarA, at 104,238 to 104,621
marA
OKFHMN_01080: marR - multiple antibiotic resistance transcriptional regulator MarR, at 104,641 to 105,075
marR
OKFHMN_01085: marC - NAAT family transporter MarC, at 105,287 to 105,952
marC
OKFHMN_01090: ydeA - L-arabinose MFS transporter, at 105,977 to 107,167
ydeA
Position (kb) 104
105
106 Strain fitness (log2 ratio) -2
-1
0
1 at 103.990 kb on - strand at 104.240 kb on - strand at 104.327 kb on - strand, within marA at 104.607 kb on - strand at 104.735 kb on - strand, within marR at 104.857 kb on - strand, within marR at 104.914 kb on - strand, within marR at 104.962 kb on - strand, within marR at 105.078 kb on + strand at 105.211 kb on - strand at 105.266 kb on + strand at 105.651 kb on + strand, within marC at 105.703 kb on + strand, within marC at 105.830 kb on - strand, within marC
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 103,990 - -2.6 104,240 - +0.2 104,327 - marA OKFHMN_01075 0.23 +0.9 104,607 - -0.1 104,735 - marR OKFHMN_01080 0.22 -1.3 104,857 - marR OKFHMN_01080 0.50 -2.6 104,914 - marR OKFHMN_01080 0.63 -1.6 104,962 - marR OKFHMN_01080 0.74 -1.1 105,078 + -1.4 105,211 - +0.1 105,266 + +0.1 105,651 + marC OKFHMN_01085 0.55 -0.6 105,703 + marC OKFHMN_01085 0.62 +0.9 105,830 - marC OKFHMN_01085 0.82 +0.1
Or see this region's nucleotide sequence