Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF981 and GFF982 are separated by 28 nucleotides GFF982 and GFF983 are separated by 28 nucleotides GFF983 and GFF984 are separated by 28 nucleotides GFF984 and GFF985 are separated by 42 nucleotides GFF985 and GFF986 are separated by 1 nucleotides GFF986 and GFF987 are separated by 4 nucleotides
GFF981 - hypothetical protein, at 981,070 to 981,303
GFF981
GFF982 - FIG00636713: repeated hypothetical protein, at 981,332 to 981,583
GFF982
GFF983 - FIG00636713: repeated hypothetical protein, at 981,612 to 981,923
GFF983
GFF984 - FIG00636713: repeated hypothetical protein, at 981,952 to 982,242
GFF984
GFF985 - Phage shock protein C, at 982,285 to 982,665
GFF985
GFF986 - Phage shock protein B, at 982,667 to 982,933
GFF986
GFF987 - Phage shock protein A @ Suppressor of sigma54-dependent transcription, PspA-like, at 982,938 to 983,606
GFF987
Position (kb) 982
983 Strain fitness (log2 ratio) -2
-1
0
1
2 at 981.289 kb on - strand at 981.304 kb on - strand at 981.312 kb on + strand at 981.313 kb on + strand at 981.313 kb on + strand at 981.314 kb on - strand at 981.318 kb on + strand at 981.342 kb on + strand at 981.349 kb on - strand at 981.349 kb on - strand at 981.350 kb on - strand at 981.378 kb on + strand, within GFF982 at 981.383 kb on - strand, within GFF982 at 981.383 kb on - strand, within GFF982 at 981.383 kb on - strand, within GFF982 at 981.383 kb on - strand, within GFF982 at 981.387 kb on + strand, within GFF982 at 981.424 kb on - strand, within GFF982 at 981.460 kb on + strand, within GFF982 at 981.460 kb on + strand, within GFF982 at 981.465 kb on + strand, within GFF982 at 981.468 kb on - strand, within GFF982 at 981.473 kb on - strand, within GFF982 at 981.473 kb on - strand, within GFF982 at 981.482 kb on + strand, within GFF982 at 981.482 kb on + strand, within GFF982 at 981.500 kb on + strand, within GFF982 at 981.515 kb on - strand, within GFF982 at 981.536 kb on - strand, within GFF982 at 981.565 kb on - strand at 981.577 kb on + strand at 981.582 kb on + strand at 981.582 kb on + strand at 981.582 kb on + strand at 981.585 kb on - strand at 981.587 kb on + strand at 981.592 kb on + strand at 981.592 kb on + strand at 981.592 kb on + strand at 981.595 kb on - strand at 981.600 kb on - strand at 981.600 kb on - strand at 981.601 kb on - strand at 981.670 kb on + strand, within GFF983 at 981.678 kb on - strand, within GFF983 at 981.678 kb on - strand, within GFF983 at 981.678 kb on - strand, within GFF983 at 981.702 kb on - strand, within GFF983 at 981.707 kb on - strand, within GFF983 at 981.707 kb on - strand, within GFF983 at 981.718 kb on - strand, within GFF983 at 981.729 kb on - strand, within GFF983 at 981.759 kb on - strand, within GFF983 at 981.790 kb on - strand, within GFF983 at 981.796 kb on + strand, within GFF983 at 981.804 kb on - strand, within GFF983 at 981.846 kb on + strand, within GFF983 at 981.873 kb on - strand, within GFF983 at 981.885 kb on - strand, within GFF983 at 981.934 kb on + strand at 981.934 kb on + strand at 981.934 kb on + strand at 981.934 kb on + strand at 981.935 kb on - strand at 981.939 kb on + strand at 981.939 kb on + strand at 981.942 kb on - strand at 981.942 kb on - strand at 981.942 kb on - strand at 981.942 kb on - strand at 981.942 kb on - strand at 981.947 kb on - strand at 981.947 kb on - strand at 981.958 kb on - strand at 981.980 kb on + strand at 982.014 kb on + strand, within GFF984 at 982.022 kb on - strand, within GFF984 at 982.029 kb on + strand, within GFF984 at 982.029 kb on + strand, within GFF984 at 982.097 kb on + strand, within GFF984 at 982.099 kb on + strand, within GFF984 at 982.107 kb on - strand, within GFF984 at 982.121 kb on + strand, within GFF984 at 982.129 kb on - strand, within GFF984 at 982.129 kb on - strand, within GFF984 at 982.160 kb on + strand, within GFF984 at 982.165 kb on + strand, within GFF984 at 982.167 kb on - strand, within GFF984 at 982.168 kb on - strand, within GFF984 at 982.172 kb on + strand, within GFF984 at 982.173 kb on - strand, within GFF984 at 982.173 kb on - strand, within GFF984 at 982.175 kb on - strand, within GFF984 at 982.181 kb on + strand, within GFF984 at 982.218 kb on - strand at 982.230 kb on - strand at 982.230 kb on - strand at 982.251 kb on - strand at 982.253 kb on - strand at 982.266 kb on + strand at 982.274 kb on - strand at 982.274 kb on - strand at 982.276 kb on + strand at 982.276 kb on + strand at 982.276 kb on + strand at 982.284 kb on - strand at 982.301 kb on - strand at 982.303 kb on - strand at 982.322 kb on - strand at 982.331 kb on + strand, within GFF985 at 982.331 kb on + strand, within GFF985 at 982.331 kb on + strand, within GFF985 at 982.331 kb on + strand, within GFF985 at 982.339 kb on - strand, within GFF985 at 982.339 kb on - strand, within GFF985 at 982.339 kb on - strand, within GFF985 at 982.339 kb on - strand, within GFF985 at 982.339 kb on - strand, within GFF985 at 982.339 kb on - strand, within GFF985 at 982.339 kb on - strand, within GFF985 at 982.339 kb on - strand, within GFF985 at 982.339 kb on - strand, within GFF985 at 982.389 kb on + strand, within GFF985 at 982.412 kb on - strand, within GFF985 at 982.417 kb on - strand, within GFF985 at 982.434 kb on - strand, within GFF985 at 982.444 kb on + strand, within GFF985 at 982.452 kb on - strand, within GFF985 at 982.461 kb on + strand, within GFF985 at 982.462 kb on + strand, within GFF985 at 982.463 kb on + strand, within GFF985 at 982.471 kb on - strand, within GFF985 at 982.471 kb on - strand, within GFF985 at 982.504 kb on + strand, within GFF985 at 982.512 kb on - strand, within GFF985 at 982.514 kb on + strand, within GFF985 at 982.520 kb on - strand, within GFF985 at 982.540 kb on + strand, within GFF985 at 982.540 kb on + strand, within GFF985 at 982.540 kb on + strand, within GFF985 at 982.540 kb on + strand, within GFF985 at 982.540 kb on + strand, within GFF985 at 982.540 kb on + strand, within GFF985 at 982.540 kb on + strand, within GFF985 at 982.540 kb on + strand, within GFF985 at 982.545 kb on + strand, within GFF985 at 982.548 kb on - strand, within GFF985 at 982.548 kb on - strand, within GFF985 at 982.548 kb on - strand, within GFF985 at 982.550 kb on + strand, within GFF985 at 982.553 kb on - strand, within GFF985 at 982.558 kb on - strand, within GFF985 at 982.558 kb on - strand, within GFF985 at 982.561 kb on + strand, within GFF985 at 982.561 kb on + strand, within GFF985 at 982.562 kb on + strand, within GFF985 at 982.565 kb on - strand, within GFF985 at 982.569 kb on - strand, within GFF985 at 982.571 kb on + strand, within GFF985 at 982.595 kb on - strand, within GFF985 at 982.595 kb on - strand, within GFF985 at 982.603 kb on + strand, within GFF985 at 982.608 kb on + strand, within GFF985 at 982.610 kb on + strand, within GFF985 at 982.610 kb on + strand, within GFF985 at 982.610 kb on + strand, within GFF985 at 982.611 kb on - strand, within GFF985 at 982.618 kb on - strand, within GFF985 at 982.618 kb on - strand, within GFF985 at 982.618 kb on - strand, within GFF985 at 982.638 kb on - strand at 982.658 kb on + strand at 982.665 kb on + strand at 982.671 kb on - strand at 982.685 kb on + strand at 982.685 kb on + strand at 982.692 kb on + strand at 982.702 kb on + strand, within GFF986 at 982.702 kb on + strand, within GFF986 at 982.702 kb on + strand, within GFF986 at 982.705 kb on - strand, within GFF986 at 982.710 kb on - strand, within GFF986 at 982.710 kb on - strand, within GFF986 at 982.710 kb on - strand, within GFF986 at 982.724 kb on - strand, within GFF986 at 982.731 kb on - strand, within GFF986 at 982.748 kb on + strand, within GFF986 at 982.748 kb on + strand, within GFF986 at 982.748 kb on - strand, within GFF986 at 982.758 kb on - strand, within GFF986 at 982.759 kb on + strand, within GFF986 at 982.767 kb on - strand, within GFF986 at 982.767 kb on - strand, within GFF986 at 982.767 kb on - strand, within GFF986 at 982.769 kb on + strand, within GFF986 at 982.769 kb on + strand, within GFF986 at 982.769 kb on + strand, within GFF986 at 982.771 kb on + strand, within GFF986 at 982.777 kb on - strand, within GFF986 at 982.792 kb on + strand, within GFF986 at 982.792 kb on + strand, within GFF986 at 982.800 kb on - strand, within GFF986 at 982.800 kb on - strand, within GFF986 at 982.820 kb on - strand, within GFF986 at 982.822 kb on + strand, within GFF986 at 982.824 kb on + strand, within GFF986 at 982.824 kb on + strand, within GFF986 at 982.850 kb on + strand, within GFF986 at 982.850 kb on - strand, within GFF986 at 982.860 kb on + strand, within GFF986 at 982.867 kb on + strand, within GFF986 at 982.872 kb on + strand, within GFF986 at 982.885 kb on - strand, within GFF986 at 982.885 kb on - strand, within GFF986 at 982.892 kb on - strand, within GFF986 at 982.892 kb on - strand, within GFF986 at 982.894 kb on - strand, within GFF986 at 982.897 kb on - strand, within GFF986 at 982.898 kb on + strand, within GFF986 at 982.916 kb on + strand at 982.918 kb on + strand at 982.935 kb on + strand at 982.945 kb on + strand at 982.945 kb on + strand at 982.945 kb on + strand at 982.945 kb on + strand at 982.945 kb on + strand at 982.953 kb on - strand at 982.953 kb on - strand at 982.953 kb on - strand at 982.953 kb on - strand at 982.953 kb on - strand at 982.953 kb on - strand at 983.001 kb on + strand at 983.009 kb on - strand, within GFF987 at 983.029 kb on + strand, within GFF987 at 983.029 kb on + strand, within GFF987 at 983.029 kb on + strand, within GFF987 at 983.029 kb on + strand, within GFF987 at 983.029 kb on + strand, within GFF987 at 983.029 kb on + strand, within GFF987 at 983.037 kb on - strand, within GFF987 at 983.037 kb on - strand, within GFF987 at 983.037 kb on - strand, within GFF987 at 983.037 kb on - strand, within GFF987 at 983.037 kb on - strand, within GFF987 at 983.037 kb on - strand, within GFF987 at 983.037 kb on - strand, within GFF987 at 983.037 kb on - strand, within GFF987 at 983.037 kb on - strand, within GFF987 at 983.037 kb on - strand, within GFF987 at 983.037 kb on - strand, within GFF987 at 983.037 kb on - strand, within GFF987 at 983.048 kb on + strand, within GFF987 at 983.075 kb on - strand, within GFF987 at 983.075 kb on - strand, within GFF987 at 983.075 kb on - strand, within GFF987 at 983.090 kb on + strand, within GFF987 at 983.090 kb on + strand, within GFF987 at 983.096 kb on - strand, within GFF987 at 983.096 kb on - strand, within GFF987 at 983.107 kb on - strand, within GFF987 at 983.107 kb on - strand, within GFF987 at 983.109 kb on + strand, within GFF987 at 983.109 kb on + strand, within GFF987 at 983.127 kb on - strand, within GFF987 at 983.144 kb on - strand, within GFF987 at 983.144 kb on - strand, within GFF987 at 983.153 kb on + strand, within GFF987 at 983.153 kb on + strand, within GFF987 at 983.194 kb on - strand, within GFF987 at 983.201 kb on + strand, within GFF987 at 983.624 kb on - strand at 983.630 kb on + strand at 983.630 kb on + strand at 983.630 kb on + strand at 983.636 kb on - strand at 983.638 kb on - strand at 983.638 kb on - strand at 983.639 kb on + strand at 983.646 kb on - strand at 983.663 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 981,289 - -0.2 981,304 - -1.3 981,312 + +0.1 981,313 + +1.2 981,313 + +0.1 981,314 - -0.7 981,318 + -1.1 981,342 + +0.9 981,349 - +0.1 981,349 - -2.6 981,350 - -0.6 981,378 + GFF982 0.18 -0.7 981,383 - GFF982 0.20 -0.4 981,383 - GFF982 0.20 -0.5 981,383 - GFF982 0.20 +0.2 981,383 - GFF982 0.20 -0.1 981,387 + GFF982 0.22 +1.9 981,424 - GFF982 0.37 -0.2 981,460 + GFF982 0.51 -0.6 981,460 + GFF982 0.51 +0.5 981,465 + GFF982 0.53 -0.0 981,468 - GFF982 0.54 -1.1 981,473 - GFF982 0.56 -1.6 981,473 - GFF982 0.56 +0.1 981,482 + GFF982 0.60 -0.8 981,482 + GFF982 0.60 -0.2 981,500 + GFF982 0.67 -0.4 981,515 - GFF982 0.73 +1.4 981,536 - GFF982 0.81 -0.4 981,565 - -0.5 981,577 + -0.1 981,582 + +0.1 981,582 + +0.2 981,582 + +0.6 981,585 - +0.5 981,587 + +0.1 981,592 + +0.1 981,592 + +0.3 981,592 + +0.0 981,595 - +0.1 981,600 - +1.4 981,600 - +0.1 981,601 - -0.1 981,670 + GFF983 0.19 -2.3 981,678 - GFF983 0.21 -1.4 981,678 - GFF983 0.21 -0.9 981,678 - GFF983 0.21 -0.8 981,702 - GFF983 0.29 -0.9 981,707 - GFF983 0.30 +1.0 981,707 - GFF983 0.30 -0.8 981,718 - GFF983 0.34 +0.8 981,729 - GFF983 0.38 -0.9 981,759 - GFF983 0.47 +0.2 981,790 - GFF983 0.57 -0.5 981,796 + GFF983 0.59 -0.7 981,804 - GFF983 0.62 -0.1 981,846 + GFF983 0.75 -0.4 981,873 - GFF983 0.84 -0.2 981,885 - GFF983 0.88 -0.6 981,934 + -0.2 981,934 + +0.8 981,934 + +0.5 981,934 + +0.5 981,935 - -1.8 981,939 + +0.7 981,939 + -1.3 981,942 - -1.5 981,942 - +1.1 981,942 - -0.5 981,942 - +0.8 981,942 - +0.1 981,947 - -0.4 981,947 - -2.6 981,958 - +0.6 981,980 + +0.4 982,014 + GFF984 0.21 -1.1 982,022 - GFF984 0.24 +0.4 982,029 + GFF984 0.26 -1.8 982,029 + GFF984 0.26 -0.5 982,097 + GFF984 0.50 -0.7 982,099 + GFF984 0.51 +1.1 982,107 - GFF984 0.53 +0.3 982,121 + GFF984 0.58 -1.8 982,129 - GFF984 0.61 -0.9 982,129 - GFF984 0.61 -0.2 982,160 + GFF984 0.71 -0.7 982,165 + GFF984 0.73 -1.0 982,167 - GFF984 0.74 +0.0 982,168 - GFF984 0.74 +1.0 982,172 + GFF984 0.76 -0.5 982,173 - GFF984 0.76 -0.3 982,173 - GFF984 0.76 +0.2 982,175 - GFF984 0.77 +0.6 982,181 + GFF984 0.79 +0.4 982,218 - +0.2 982,230 - -1.8 982,230 - -0.9 982,251 - +0.6 982,253 - -1.3 982,266 + -1.0 982,274 - +1.3 982,274 - -0.6 982,276 + -2.3 982,276 + -0.4 982,276 + +0.7 982,284 - +0.6 982,301 - +0.2 982,303 - -0.0 982,322 - +1.5 982,331 + GFF985 0.12 -2.5 982,331 + GFF985 0.12 +0.5 982,331 + GFF985 0.12 -1.3 982,331 + GFF985 0.12 -0.6 982,339 - GFF985 0.14 +0.4 982,339 - GFF985 0.14 +1.8 982,339 - GFF985 0.14 +0.9 982,339 - GFF985 0.14 +0.3 982,339 - GFF985 0.14 +0.5 982,339 - GFF985 0.14 -1.8 982,339 - GFF985 0.14 -2.1 982,339 - GFF985 0.14 -1.7 982,339 - GFF985 0.14 -0.3 982,389 + GFF985 0.27 +0.5 982,412 - GFF985 0.33 +1.1 982,417 - GFF985 0.35 -0.5 982,434 - GFF985 0.39 +0.1 982,444 + GFF985 0.42 +0.3 982,452 - GFF985 0.44 -0.2 982,461 + GFF985 0.46 +0.2 982,462 + GFF985 0.46 +0.7 982,463 + GFF985 0.47 +0.3 982,471 - GFF985 0.49 +0.9 982,471 - GFF985 0.49 -1.6 982,504 + GFF985 0.57 -0.7 982,512 - GFF985 0.60 +0.3 982,514 + GFF985 0.60 +0.2 982,520 - GFF985 0.62 -0.2 982,540 + GFF985 0.67 -1.4 982,540 + GFF985 0.67 -0.0 982,540 + GFF985 0.67 -2.1 982,540 + GFF985 0.67 +0.5 982,540 + GFF985 0.67 -0.7 982,540 + GFF985 0.67 -0.4 982,540 + GFF985 0.67 -0.8 982,540 + GFF985 0.67 -1.6 982,545 + GFF985 0.68 -0.6 982,548 - GFF985 0.69 -0.0 982,548 - GFF985 0.69 -0.2 982,548 - GFF985 0.69 +0.4 982,550 + GFF985 0.70 -0.5 982,553 - GFF985 0.70 +0.7 982,558 - GFF985 0.72 +0.2 982,558 - GFF985 0.72 -1.4 982,561 + GFF985 0.72 +0.1 982,561 + GFF985 0.72 +0.4 982,562 + GFF985 0.73 -1.9 982,565 - GFF985 0.73 -0.9 982,569 - GFF985 0.75 +0.1 982,571 + GFF985 0.75 +0.7 982,595 - GFF985 0.81 +0.7 982,595 - GFF985 0.81 -1.8 982,603 + GFF985 0.83 -1.0 982,608 + GFF985 0.85 -0.3 982,610 + GFF985 0.85 +0.8 982,610 + GFF985 0.85 +0.1 982,610 + GFF985 0.85 +0.5 982,611 - GFF985 0.86 -1.1 982,618 - GFF985 0.87 -0.8 982,618 - GFF985 0.87 -1.2 982,618 - GFF985 0.87 -0.7 982,638 - -0.4 982,658 + -0.9 982,665 + -0.5 982,671 - -0.9 982,685 + +0.2 982,685 + +1.5 982,692 + +0.2 982,702 + GFF986 0.13 -1.9 982,702 + GFF986 0.13 -2.0 982,702 + GFF986 0.13 -1.5 982,705 - GFF986 0.14 +1.1 982,710 - GFF986 0.16 -1.4 982,710 - GFF986 0.16 -0.5 982,710 - GFF986 0.16 -0.2 982,724 - GFF986 0.21 -0.6 982,731 - GFF986 0.24 +0.0 982,748 + GFF986 0.30 -0.6 982,748 + GFF986 0.30 -1.1 982,748 - GFF986 0.30 +0.5 982,758 - GFF986 0.34 -0.7 982,759 + GFF986 0.34 +0.9 982,767 - GFF986 0.37 +1.7 982,767 - GFF986 0.37 +0.1 982,767 - GFF986 0.37 -1.1 982,769 + GFF986 0.38 +1.0 982,769 + GFF986 0.38 -1.0 982,769 + GFF986 0.38 -0.6 982,771 + GFF986 0.39 -0.6 982,777 - GFF986 0.41 -1.3 982,792 + GFF986 0.47 -0.1 982,792 + GFF986 0.47 -1.1 982,800 - GFF986 0.50 +0.6 982,800 - GFF986 0.50 +0.3 982,820 - GFF986 0.57 +0.0 982,822 + GFF986 0.58 +1.7 982,824 + GFF986 0.59 +0.5 982,824 + GFF986 0.59 +0.6 982,850 + GFF986 0.69 -2.6 982,850 - GFF986 0.69 +0.4 982,860 + GFF986 0.72 -1.0 982,867 + GFF986 0.75 -0.3 982,872 + GFF986 0.77 -0.2 982,885 - GFF986 0.82 -1.1 982,885 - GFF986 0.82 +0.1 982,892 - GFF986 0.84 -1.4 982,892 - GFF986 0.84 -0.6 982,894 - GFF986 0.85 -0.4 982,897 - GFF986 0.86 +0.2 982,898 + GFF986 0.87 -0.2 982,916 + +0.3 982,918 + +0.3 982,935 + -1.4 982,945 + +0.2 982,945 + +0.2 982,945 + -2.5 982,945 + +0.2 982,945 + -0.3 982,953 - -1.2 982,953 - -0.5 982,953 - -1.7 982,953 - -0.6 982,953 - -0.3 982,953 - +1.2 983,001 + -0.5 983,009 - GFF987 0.11 +0.7 983,029 + GFF987 0.14 +0.9 983,029 + GFF987 0.14 -0.2 983,029 + GFF987 0.14 -0.5 983,029 + GFF987 0.14 -0.5 983,029 + GFF987 0.14 -0.9 983,029 + GFF987 0.14 -2.1 983,037 - GFF987 0.15 +0.2 983,037 - GFF987 0.15 -1.4 983,037 - GFF987 0.15 -0.0 983,037 - GFF987 0.15 -0.4 983,037 - GFF987 0.15 +1.3 983,037 - GFF987 0.15 -2.2 983,037 - GFF987 0.15 -1.6 983,037 - GFF987 0.15 -1.5 983,037 - GFF987 0.15 -0.1 983,037 - GFF987 0.15 +0.8 983,037 - GFF987 0.15 -0.5 983,037 - GFF987 0.15 -0.6 983,048 + GFF987 0.16 -0.6 983,075 - GFF987 0.20 +0.6 983,075 - GFF987 0.20 -0.8 983,075 - GFF987 0.20 -1.3 983,090 + GFF987 0.23 -0.1 983,090 + GFF987 0.23 +0.0 983,096 - GFF987 0.24 -2.2 983,096 - GFF987 0.24 -0.6 983,107 - GFF987 0.25 +0.6 983,107 - GFF987 0.25 -0.6 983,109 + GFF987 0.26 +0.4 983,109 + GFF987 0.26 +0.6 983,127 - GFF987 0.28 -1.0 983,144 - GFF987 0.31 -1.0 983,144 - GFF987 0.31 +0.6 983,153 + GFF987 0.32 -1.6 983,153 + GFF987 0.32 +0.1 983,194 - GFF987 0.38 -0.5 983,201 + GFF987 0.39 -0.4 983,624 - -0.9 983,630 + -0.6 983,630 + -1.2 983,630 + +0.5 983,636 - -0.2 983,638 - -0.3 983,638 - +0.2 983,639 + -0.2 983,646 - +1.2 983,663 + -0.4
Or see this region's nucleotide sequence