Strain Fitness in Sphingobium sp. HT1-2 around GFF936

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
931,704	+		GFF934	0.88	-0.8
931,705	-		GFF934	0.88	+0.0
931,705	-		GFF934	0.88	-0.1
931,705	-		GFF934	0.88	-0.1
931,705	-		GFF934	0.88	-0.1
931,705	-		GFF934	0.88	-1.6
931,705	-		GFF934	0.88	-1.2
931,729	+		GFF934	0.89	+0.2
931,737	-		GFF934	0.89	+0.4
931,740	+		GFF934	0.89	-0.3
931,747	-		GFF934	0.90	+0.1
931,747	-		GFF934	0.90	+0.1
931,748	-		GFF934	0.90	-1.0
931,757	+				-1.7
931,771	-				-0.1
931,816	+				-1.3
931,820	-				-0.1
931,824	+				-0.0
931,824	+				+0.1
931,824	+				+1.2
931,824	+				-0.3
931,824	+				+0.2
931,824	+				+0.6
931,829	+				-0.8
931,832	-				-0.8
931,832	-				+0.4
931,832	-				+0.7
931,832	-				+0.4
931,832	-				-2.1
931,837	-				-0.1
931,837	-				-0.2
931,841	+				-1.6
931,841	+				-0.1
931,842	-				+0.1
931,849	-				-0.6
931,859	+				-0.7
931,861	-				+0.5
931,866	+				+0.1
931,867	+				+1.4
931,867	+				-0.1
931,875	-				-1.5
931,877	+				-0.4
931,897	+				+0.6
931,898	-				-0.0
931,905	-				+0.1
931,913	+				+0.4
931,917	+				+0.3
931,919	-				+0.8
931,927	-				-0.1
931,948	+				+0.7
931,956	-				-3.0
931,956	-				+0.5
931,970	+				+0.1
931,970	+				-0.1
931,975	-				-0.4
931,978	-				-1.5
932,012	+				-2.6
932,015	+				-0.9
932,020	+				+1.3
932,020	+				-1.0
932,020	+				+0.9
932,020	+				-0.5
932,028	-				-2.2
932,028	-				-1.4
932,028	-				-2.1
932,028	-				-1.8
932,028	-				+0.2
932,035	-				+0.1
932,042	+				-1.0
932,058	+				-0.7
932,066	-		GFF935	0.10	-1.2
932,103	-		GFF935	0.17	-0.0
932,103	-		GFF935	0.17	-1.8
932,103	-		GFF935	0.17	+0.5
932,105	-		GFF935	0.18	-0.2
932,108	+		GFF935	0.18	+0.2
932,108	+		GFF935	0.18	-1.0
932,111	-		GFF935	0.19	-2.1
932,116	-		GFF935	0.20	+0.9
932,116	-		GFF935	0.20	+0.1
932,116	-		GFF935	0.20	-0.4
932,116	-		GFF935	0.20	-1.6
932,134	-		GFF935	0.23	+0.7
932,138	-		GFF935	0.24	+0.4
932,140	+		GFF935	0.24	-1.1
932,140	+		GFF935	0.24	-0.2
932,144	-		GFF935	0.25	-1.0
932,148	-		GFF935	0.26	+1.5
932,149	-		GFF935	0.26	-0.8
932,173	-		GFF935	0.30	+0.5
932,180	+		GFF935	0.31	-0.9
932,184	-		GFF935	0.32	-2.4
932,186	+		GFF935	0.33	+0.8
932,186	+		GFF935	0.33	+0.8
932,194	-		GFF935	0.34	+1.2
932,194	-		GFF935	0.34	-1.1
932,194	-		GFF935	0.34	-1.2
932,201	-		GFF935	0.35	-1.2
932,206	-		GFF935	0.36	+1.4
932,226	+		GFF935	0.40	-1.4
932,229	-		GFF935	0.41	+0.3
932,247	+		GFF935	0.44	+0.6
932,247	+		GFF935	0.44	-1.3
932,247	+		GFF935	0.44	+0.9
932,259	+		GFF935	0.46	-1.6
932,272	-		GFF935	0.48	-1.2
932,277	+		GFF935	0.49	+0.6
932,279	-		GFF935	0.50	-2.0
932,294	-		GFF935	0.52	+1.6
932,296	+		GFF935	0.53	-1.2
932,305	+		GFF935	0.55	-2.5
932,310	+		GFF935	0.55	-1.8
932,310	+		GFF935	0.55	-1.4
932,359	+		GFF935	0.64	-1.1
932,367	-		GFF935	0.66	-0.4
932,367	-		GFF935	0.66	+0.1
932,368	+		GFF935	0.66	+1.0
932,368	+		GFF935	0.66	+1.1
932,373	+		GFF935	0.67	+0.8
932,463	+		GFF935	0.84	+0.1
932,468	+		GFF935	0.85	+0.5
932,471	+		GFF935	0.85	-0.0
932,479	-		GFF935	0.87	+0.0
932,479	-		GFF935	0.87	+1.3
932,499	+				-0.5
932,499	+				-1.0
932,504	+				-0.2
932,512	-				-0.5
932,512	-				-0.9
932,518	+				-0.5
932,518	+				-0.3
932,518	+				-1.9
932,518	+				+0.5
932,519	+				-0.6
932,519	+				-0.2
932,519	+				+0.1
932,519	+				+0.3
932,526	-				-0.5
932,527	-				-0.8
932,527	-				+0.5
932,527	-				-0.1
932,527	-				+1.5
932,527	-				-1.5
932,527	-				-2.6
932,527	-				+0.3
932,527	-				-0.1
932,527	-				-1.4
932,527	-				+0.3
932,527	-				-1.0
932,529	+				+0.2
932,529	+				+0.5
932,529	+				-0.7
932,529	+				+0.8
932,529	+				-0.5
932,529	+				-1.6
932,529	+				-0.8
932,529	+				-1.2
932,532	-				-0.2
932,532	-				+0.0
932,537	-				+0.6
932,537	-				-1.0
932,537	-				-0.4
932,537	-				-2.4
932,537	-				+1.6
932,537	-				-1.3
932,537	-				+0.9
932,537	-				-0.8
932,537	-				-2.2
932,537	-				-2.0
932,537	-				-0.5
932,537	-				-0.2
932,537	-				-0.0
932,546	+				+1.0
932,550	-				-1.2
932,552	+				-0.3
932,573	+				-1.2
932,602	-				-0.7
932,614	-				+0.1
932,703	+				-2.1
932,713	+				+0.7
932,713	+				-0.5
932,713	+				+0.1
932,713	+				-1.5
932,713	+				-1.0
932,713	+				+1.2
932,713	+				-1.1
932,713	+				-1.6
932,713	+				+1.0
932,713	+				-1.7
932,721	-				-0.5
932,721	-				+0.6
932,721	-				+0.4
932,721	-				-0.0
932,721	-				-1.0
932,721	-				-0.2
932,721	-				-0.2
932,721	-				-1.5
932,743	+		GFF936	0.10	+0.5
932,750	+		GFF936	0.12	-1.4
932,762	+		GFF936	0.14	-1.6
932,763	-		GFF936	0.15	+1.6
932,832	+		GFF936	0.30	+0.3
932,832	+		GFF936	0.30	-1.9
932,832	+		GFF936	0.30	-0.5
932,832	+		GFF936	0.30	-1.2
932,832	+		GFF936	0.30	+0.3
932,832	+		GFF936	0.30	-0.7
932,832	+		GFF936	0.30	+0.4
932,832	+		GFF936	0.30	-0.0
932,840	-		GFF936	0.32	-0.6
932,840	-		GFF936	0.32	+0.5
932,840	-		GFF936	0.32	-0.7
932,852	+		GFF936	0.35	-1.5
932,854	-		GFF936	0.35	+0.4
932,854	-		GFF936	0.35	+0.3
932,854	-		GFF936	0.35	-0.8
932,863	+		GFF936	0.37	+0.2
932,864	-		GFF936	0.37	-0.9
932,864	-		GFF936	0.37	-0.3
932,864	-		GFF936	0.37	+0.1
932,871	+		GFF936	0.39	+1.1
932,879	-		GFF936	0.41	-1.3
932,889	+		GFF936	0.43	+1.8
932,890	+		GFF936	0.43	+0.6
932,890	+		GFF936	0.43	-0.5
932,890	+		GFF936	0.43	-0.7
932,890	+		GFF936	0.43	-1.9
932,890	+		GFF936	0.43	-0.1
932,892	+		GFF936	0.44	-0.9
932,897	-		GFF936	0.45	-1.0
932,898	-		GFF936	0.45	-1.6
932,898	-		GFF936	0.45	+0.4
932,898	-		GFF936	0.45	-2.2
932,898	-		GFF936	0.45	-0.8
932,898	-		GFF936	0.45	-1.2
932,902	-		GFF936	0.46	-2.8
932,920	+		GFF936	0.50	-0.8
932,921	+		GFF936	0.50	+0.5
932,927	-		GFF936	0.52	+0.8
932,928	-		GFF936	0.52	+0.3
932,928	-		GFF936	0.52	-0.5
932,928	-		GFF936	0.52	-0.1
932,929	-		GFF936	0.52	+0.7
932,961	+		GFF936	0.59	+1.3
932,964	-		GFF936	0.60	-0.3
932,964	-		GFF936	0.60	-0.2
932,971	-		GFF936	0.61	+1.5
932,987	-		GFF936	0.65	+1.0
933,010	+		GFF936	0.70	-1.2
933,012	-		GFF936	0.71	+1.6
933,018	-		GFF936	0.72	+0.1
933,018	-		GFF936	0.72	-0.7
933,020	-		GFF936	0.73	+0.7
933,020	-		GFF936	0.73	+0.8
933,045	+		GFF936	0.78	+0.4
933,045	+		GFF936	0.78	-2.7
933,047	-		GFF936	0.79	+0.0
933,066	+		GFF936	0.83	-0.5
933,071	+		GFF936	0.84	-1.7
933,071	+		GFF936	0.84	+0.0
933,079	-		GFF936	0.86	+0.5
933,081	+		GFF936	0.86	+0.8
933,081	+		GFF936	0.86	-0.5
933,089	-		GFF936	0.88	+0.1
933,089	-		GFF936	0.88	-1.0
933,089	-		GFF936	0.88	+0.6
933,090	-		GFF936	0.88	-0.0
933,094	+		GFF936	0.89	-0.7
933,118	+				+0.3
933,118	+				-0.2
933,123	+				+0.6
933,131	-				-0.2
933,155	+				+0.2
933,159	-				-0.4
933,161	-				+0.9
933,169	+				+0.1
933,169	+				-0.1
933,179	+				-0.1
933,179	+				-1.7
933,179	+				+0.2
933,179	+				+0.5
933,187	-				+0.9
933,187	-				+0.4
933,187	-				-0.3
933,187	-				+1.0
933,202	+				-2.9
933,210	-				-0.2
933,225	+				-0.5
933,233	-				+0.6
933,233	-				+0.2
933,238	-				+0.3
933,238	-				+0.1
933,249	-				-0.6
933,259	-				-0.4
933,259	-				-0.5
933,265	+				+0.1
933,275	+				+1.0
933,286	+				+0.7
933,319	+				-0.2
933,319	+				-0.1
933,319	+				+0.8
933,327	-				+0.5
933,338	+				+0.3
933,354	+		GFF937	0.11	-1.2
933,354	+		GFF937	0.11	-0.8
933,354	+		GFF937	0.11	+0.4
933,381	+		GFF937	0.15	+0.2
933,389	-		GFF937	0.16	-0.6
933,393	-		GFF937	0.17	+0.4
933,394	-		GFF937	0.17	+0.4
933,428	+		GFF937	0.22	-0.3
933,436	-		GFF937	0.23	-0.6
933,448	-		GFF937	0.25	+1.6
933,461	+		GFF937	0.27	+1.3
933,469	-		GFF937	0.28	+0.1
933,471	+		GFF937	0.28	-0.4
933,471	+		GFF937	0.28	+0.0
933,471	+		GFF937	0.28	+1.0
933,471	+		GFF937	0.28	+0.1
933,476	+		GFF937	0.29	-0.4
933,476	+		GFF937	0.29	-1.5
933,479	-		GFF937	0.30	+0.5
933,479	-		GFF937	0.30	-1.6
933,479	-		GFF937	0.30	-0.7
933,479	-		GFF937	0.30	-0.4
933,479	-		GFF937	0.30	+0.0
933,484	-		GFF937	0.30	-0.2
933,484	-		GFF937	0.30	-2.4
933,515	-		GFF937	0.35	-1.2
933,517	+		GFF937	0.35	-0.1
933,523	+		GFF937	0.36	-1.2
933,523	+		GFF937	0.36	+1.4
933,531	-		GFF937	0.37	-0.4
933,531	-		GFF937	0.37	+0.3
933,541	+		GFF937	0.39	+0.1
933,541	+		GFF937	0.39	+0.4
933,542	+		GFF937	0.39	-1.0
933,546	+		GFF937	0.40	-1.8
933,570	+		GFF937	0.43	+0.1
933,600	-		GFF937	0.48	-2.8
933,613	-		GFF937	0.50	-0.9
933,653	+		GFF937	0.56	-2.2
933,661	-		GFF937	0.57	+0.3
933,694	-		GFF937	0.62	+1.3
933,701	+		GFF937	0.63	-0.8
933,702	-		GFF937	0.63	+0.1
933,709	-		GFF937	0.64	+0.4
933,715	-		GFF937	0.65	-0.4
933,715	-		GFF937	0.65	-0.1
933,732	+		GFF937	0.68	-0.7
933,733	-		GFF937	0.68	+0.5
933,738	-		GFF937	0.69	-0.1
933,746	+		GFF937	0.70	+0.9
933,746	+		GFF937	0.70	-0.5
933,754	-		GFF937	0.71	+1.2
933,765	+		GFF937	0.73	+0.5
933,781	+		GFF937	0.75	-1.1
933,792	+		GFF937	0.77	-0.4
933,833	-		GFF937	0.83	+0.9
933,843	+		GFF937	0.85	-1.6
933,857	-		GFF937	0.87	-1.6
933,861	+		GFF937	0.87	+0.3
933,886	+				+1.1
933,886	-				-0.5
933,892	+				-1.6
933,896	+				+0.6
933,913	+				+0.2
933,913	+				-1.9
933,913	+				+0.3
933,921	-				-1.8
933,921	-				-0.2
933,923	-				-1.8
933,929	-				-0.1
933,933	-				+0.2
933,937	+				-1.5
933,945	-				-0.4
933,945	-				+0.7
933,945	-				+0.2
933,992	+				+0.2
933,992	+				+0.0
933,992	+				-0.7
934,000	-				-0.2
934,005	+				-0.5
934,027	-		GFF938	0.14	-0.7
934,038	-		GFF938	0.16	+1.2
934,072	+		GFF938	0.25	-0.5
934,078	+		GFF938	0.26	+0.9
934,078	+		GFF938	0.26	+1.7
934,078	+		GFF938	0.26	+0.9
934,086	-		GFF938	0.28	-0.0
934,097	+		GFF938	0.31	-0.4
934,100	-		GFF938	0.32	-0.3
934,105	+		GFF938	0.33	+0.2
934,105	-		GFF938	0.33	-0.7
934,113	+		GFF938	0.35	+1.1
934,113	+		GFF938	0.35	-0.5
934,113	+		GFF938	0.35	-0.1
934,121	-		GFF938	0.37	-1.2
934,121	-		GFF938	0.37	+0.2
934,126	+		GFF938	0.38	+0.3
934,126	-		GFF938	0.38	-0.7
934,134	-		GFF938	0.40	+0.0
934,134	-		GFF938	0.40	-1.2
934,134	-		GFF938	0.40	-1.3