Strain Fitness in Sphingobium sp. HT1-2 around GFF920

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
913,222	-				-1.3
913,267	-				-1.0
913,313	+				-2.0
913,340	-				-1.7
913,340	-				-1.9
913,359	+				-0.7
913,359	+				+0.6
913,359	+				+1.2
913,359	+				-0.7
913,359	+				-0.7
913,367	-				-1.6
913,379	+				-1.2
913,384	+				+0.6
913,384	+				-1.7
913,384	+				-0.6
913,392	-				-0.8
913,392	-				+1.1
913,393	+				-1.7
913,401	-				+0.5
913,401	-				+0.3
913,401	-				-0.2
913,401	-				+0.6
913,443	-				-0.0
913,469	-		GFF919	0.12	-0.5
913,471	-		GFF919	0.13	-0.0
913,482	-		GFF919	0.14	+1.1
913,489	-		GFF919	0.15	-1.4
913,489	-		GFF919	0.15	+1.3
913,491	-		GFF919	0.15	-0.8
913,495	-		GFF919	0.15	-1.5
913,496	-		GFF919	0.16	-0.5
913,516	+		GFF919	0.18	-1.4
913,524	+		GFF919	0.19	-0.1
913,524	+		GFF919	0.19	+0.5
913,524	-		GFF919	0.19	+0.8
913,524	-		GFF919	0.19	-0.3
913,524	-		GFF919	0.19	-1.6
913,537	+		GFF919	0.20	-1.1
913,551	+		GFF919	0.22	-0.1
913,551	+		GFF919	0.22	-1.4
913,551	+		GFF919	0.22	-1.3
913,551	+		GFF919	0.22	-0.3
913,551	+		GFF919	0.22	-0.6
913,551	+		GFF919	0.22	-1.8
913,559	-		GFF919	0.23	+0.3
913,564	-		GFF919	0.23	+1.9
913,570	+		GFF919	0.24	-0.2
913,608	+		GFF919	0.28	+0.5
913,608	-		GFF919	0.28	-0.9
913,615	+		GFF919	0.29	-0.2
913,621	-		GFF919	0.30	-0.7
913,628	+		GFF919	0.31	-1.0
913,665	-		GFF919	0.35	+1.0
913,685	+		GFF919	0.37	-2.0
913,685	+		GFF919	0.37	+0.4
913,685	+		GFF919	0.37	-0.8
913,693	-		GFF919	0.38	-0.2
913,695	+		GFF919	0.39	+1.1
913,707	-		GFF919	0.40	-0.4
913,709	-		GFF919	0.40	-1.3
913,711	+		GFF919	0.40	-1.6
913,719	-		GFF919	0.41	+0.9
913,719	-		GFF919	0.41	-0.2
913,725	+		GFF919	0.42	-0.3
913,747	+		GFF919	0.45	-1.2
913,750	-		GFF919	0.45	-1.2
913,780	+		GFF919	0.48	-0.7
913,836	+		GFF919	0.55	-1.4
913,838	+		GFF919	0.55	-0.0
913,843	-		GFF919	0.56	+0.4
913,846	+		GFF919	0.56	-0.2
913,846	-		GFF919	0.56	-0.4
913,854	-		GFF919	0.57	-1.3
913,872	+		GFF919	0.59	+0.7
913,877	+		GFF919	0.60	-0.2
913,880	-		GFF919	0.60	-0.8
913,884	+		GFF919	0.60	-0.3
913,885	-		GFF919	0.60	+0.5
913,885	-		GFF919	0.60	+0.5
913,891	+		GFF919	0.61	-1.9
913,907	+		GFF919	0.63	-1.6
913,923	-		GFF919	0.65	-0.6
913,944	+		GFF919	0.67	-0.3
913,949	+		GFF919	0.68	-0.5
913,949	+		GFF919	0.68	-0.4
913,949	+		GFF919	0.68	+0.9
913,957	-		GFF919	0.69	+0.2
913,957	-		GFF919	0.69	-0.7
913,957	-		GFF919	0.69	-0.4
913,957	-		GFF919	0.69	+0.6
913,959	+		GFF919	0.69	-0.7
913,959	+		GFF919	0.69	-0.2
913,959	+		GFF919	0.69	-0.1
913,967	-		GFF919	0.70	-1.1
913,970	+		GFF919	0.70	-0.8
913,970	+		GFF919	0.70	-1.0
913,970	+		GFF919	0.70	+0.3
913,970	+		GFF919	0.70	-0.2
913,972	-		GFF919	0.70	+1.1
913,976	+		GFF919	0.71	-2.5
914,016	+		GFF919	0.76	-1.5
914,037	-		GFF919	0.78	-0.2
914,046	+		GFF919	0.79	+0.5
914,069	+		GFF919	0.82	+0.3
914,070	+		GFF919	0.82	-0.8
914,070	+		GFF919	0.82	+0.6
914,070	+		GFF919	0.82	+1.6
914,070	+		GFF919	0.82	+0.7
914,078	-		GFF919	0.83	-1.5
914,078	-		GFF919	0.83	-0.2
914,078	-		GFF919	0.83	+0.2
914,087	-		GFF919	0.84	-0.6
914,119	+		GFF919	0.87	+0.7
914,121	+		GFF919	0.88	-0.4
914,121	+		GFF919	0.88	-0.0
914,127	-		GFF919	0.88	-0.2
914,127	-		GFF919	0.88	-0.2
914,127	-		GFF919	0.88	-0.0
914,152	-				-0.3
914,153	-				+0.6
914,163	+				-0.5
914,163	+				+1.1
914,170	-				-1.5
914,171	-				+0.2
914,211	+				-0.9
914,234	+				-1.4
914,234	+				+1.0
914,242	-				-0.4
914,242	-				-0.9
914,242	-				-0.0
914,242	-				+0.9
914,252	+				-0.5
914,252	+				+0.3
914,260	-				+0.8
914,260	-				-0.2
914,260	-				-1.0
914,280	+				+0.6
914,280	+				-1.5
914,280	+				+0.9
914,280	+				-1.9
914,285	+				-0.2
914,288	-				-1.6
914,288	-				+0.6
914,288	-				-1.0
914,288	-				+1.0
914,293	-				-1.2
914,293	-				-0.6
914,294	-				-2.4
914,314	-				-1.2
914,341	+				-0.0
914,341	+				-1.6
914,349	-		GFF920	0.10	-1.7
914,363	+		GFF920	0.11	-0.4
914,401	+		GFF920	0.14	-0.3
914,411	-		GFF920	0.15	+1.6
914,416	-		GFF920	0.15	-1.1
914,435	+		GFF920	0.17	-1.4
914,435	+		GFF920	0.17	-1.2
914,435	+		GFF920	0.17	+0.2
914,440	+		GFF920	0.17	-0.3
914,443	-		GFF920	0.17	-0.7
914,443	-		GFF920	0.17	+0.1
914,443	-		GFF920	0.17	-0.0
914,443	-		GFF920	0.17	-1.4
914,443	-		GFF920	0.17	-0.2
914,450	+		GFF920	0.18	-0.6
914,455	+		GFF920	0.18	+1.9
914,458	-		GFF920	0.19	+0.8
914,458	-		GFF920	0.19	-0.4
914,463	-		GFF920	0.19	-1.9
914,478	+		GFF920	0.20	-0.5
914,478	+		GFF920	0.20	-0.4
914,478	+		GFF920	0.20	-0.6
914,486	-		GFF920	0.21	-0.3
914,563	-		GFF920	0.27	+0.3
914,581	-		GFF920	0.28	+0.5
914,594	+		GFF920	0.29	-1.5
914,602	-		GFF920	0.30	-1.7
914,607	-		GFF920	0.30	-0.0
914,622	-		GFF920	0.32	-0.1
914,629	-		GFF920	0.32	-1.5
914,647	+		GFF920	0.33	-0.3
914,647	+		GFF920	0.33	+0.8
914,655	-		GFF920	0.34	-0.2
914,660	-		GFF920	0.35	+1.2
914,671	+		GFF920	0.35	+0.2
914,681	+		GFF920	0.36	-0.4
914,689	-		GFF920	0.37	-1.2
914,713	+		GFF920	0.39	-0.4
914,713	+		GFF920	0.39	-0.0
914,713	+		GFF920	0.39	-1.3
914,744	+		GFF920	0.41	+0.0
914,749	-		GFF920	0.41	-0.7
914,767	+		GFF920	0.43	+0.6
914,774	+		GFF920	0.43	-0.4
914,774	+		GFF920	0.43	+0.3
914,774	+		GFF920	0.43	-0.0
914,782	-		GFF920	0.44	-1.9
914,784	-		GFF920	0.44	-0.3
914,792	+		GFF920	0.45	+0.8
914,795	+		GFF920	0.45	-1.2
914,798	-		GFF920	0.45	-0.7
914,811	-		GFF920	0.46	-2.0
914,815	+		GFF920	0.47	-0.1
914,823	-		GFF920	0.47	+0.4
914,844	+		GFF920	0.49	-0.5
914,857	-		GFF920	0.50	+0.5
914,857	-		GFF920	0.50	+0.6
914,860	+		GFF920	0.50	+0.0
914,860	+		GFF920	0.50	+0.0
914,860	+		GFF920	0.50	+1.2
914,862	-		GFF920	0.50	-1.8
914,865	+		GFF920	0.51	+0.5
914,868	-		GFF920	0.51	+0.3
914,868	-		GFF920	0.51	-1.2
914,868	-		GFF920	0.51	+1.1
914,875	+		GFF920	0.51	+0.0
914,875	+		GFF920	0.51	-1.2
914,876	-		GFF920	0.51	+2.2
914,883	-		GFF920	0.52	-0.9
914,888	-		GFF920	0.52	-0.0
914,893	-		GFF920	0.53	+0.5
914,901	-		GFF920	0.53	-1.1
914,954	+		GFF920	0.58	-0.2
914,954	+		GFF920	0.58	-0.2
915,014	+		GFF920	0.62	-1.1
915,017	+		GFF920	0.63	-0.5
915,019	+		GFF920	0.63	+0.5
915,019	+		GFF920	0.63	-2.6
915,020	-		GFF920	0.63	-0.8
915,025	-		GFF920	0.63	-1.3
915,034	+		GFF920	0.64	-0.6
915,034	+		GFF920	0.64	-1.4
915,034	+		GFF920	0.64	+0.0
915,034	+		GFF920	0.64	+0.2
915,034	+		GFF920	0.64	-1.2
915,042	-		GFF920	0.64	+1.4
915,042	-		GFF920	0.64	-1.0
915,042	-		GFF920	0.64	-0.5
915,042	-		GFF920	0.64	+0.1
915,077	+		GFF920	0.67	-0.1
915,095	+		GFF920	0.69	-0.0
915,103	+		GFF920	0.69	-1.1
915,108	+		GFF920	0.70	+0.6
915,108	+		GFF920	0.70	+0.8
915,108	+		GFF920	0.70	+0.1
915,108	-		GFF920	0.70	+0.2
915,111	-		GFF920	0.70	+0.1
915,116	-		GFF920	0.70	+0.9
915,116	-		GFF920	0.70	-1.3
915,116	-		GFF920	0.70	-1.2
915,116	-		GFF920	0.70	-0.3
915,142	+		GFF920	0.72	-0.0
915,145	-		GFF920	0.73	-0.8
915,168	+		GFF920	0.74	-0.3
915,168	+		GFF920	0.74	-1.0
915,198	-		GFF920	0.77	+0.2
915,198	-		GFF920	0.77	-0.1
915,213	-		GFF920	0.78	-1.5
915,229	+		GFF920	0.79	-2.7
915,237	-		GFF920	0.80	+0.0
915,237	-		GFF920	0.80	-0.9
915,237	-		GFF920	0.80	-1.0
915,293	-		GFF920	0.84	-2.2
915,307	+		GFF920	0.85	-1.4
915,307	+		GFF920	0.85	-1.5
915,307	+		GFF920	0.85	+0.3
915,307	+		GFF920	0.85	-0.8
915,342	-		GFF920	0.88	-1.0
915,345	+		GFF920	0.88	-0.2
915,383	+				+0.3
915,383	+				-1.2
915,383	+				-0.6
915,385	+				-2.5
915,385	+				-0.2
915,393	+				-0.5
915,393	-				-1.5
915,402	+				+0.2
915,402	+				-0.6
915,409	+				+0.1
915,410	-				+0.8
915,448	-				-0.1
915,453	+				+0.2
915,458	+				+0.2
915,458	+				-1.0
915,458	-				+0.5
915,460	+				-0.8
915,488	+				-0.3
915,488	+				-0.5
915,488	-				-1.5
915,491	-				-0.3
915,496	-				-0.0
915,496	-				+0.8
915,496	-				+0.4
915,496	-				+0.5
915,496	-				+0.9
915,496	-				-0.0
915,517	+				+0.4
915,522	+				-0.7
915,531	-				+1.0
915,531	-				+0.0
915,546	-				-0.5
915,566	+				+1.5
915,574	-				-1.8
915,576	+				+1.5
915,595	-				+0.2
915,662	-				-1.0
915,664	+				-1.4
915,664	+				-0.6
915,664	+				-0.3
915,667	-				-0.6
915,672	-				+0.1
915,672	-				-0.2
915,672	-				-1.4
915,672	-				-0.4
915,687	+				+0.0
915,687	+				-0.6
915,687	+				-1.1
915,687	+				+0.6
915,695	-				-0.4
915,695	-				-0.5
915,695	-				-0.9
915,706	+				-0.5
915,706	+				+0.9
915,707	+				-1.7
915,719	-				+0.1
915,719	-				-0.4
915,722	+				-1.6
915,724	-				-1.5
915,730	-				-2.0
915,735	-				-0.3
915,737	+				-1.1
915,737	+				-1.3
915,737	+				+0.5
915,737	+				-1.7
915,737	+				+0.1
915,743	+				+0.4
915,743	+				-1.1
915,743	+				-0.4
915,743	+				-0.6
915,743	+				-0.4
915,743	+				-1.2
915,743	+				-0.1
915,743	-				-0.6
915,745	-				+0.9
915,745	-				-0.1
915,751	-				-0.1
915,751	-				-0.3
915,751	-				-1.2
915,756	-				-0.1
915,756	-				-1.4
915,781	-				+0.2
915,784	+				-1.4
915,784	+				+0.2
915,784	+				-0.8
915,792	-				-0.2
915,794	-				-1.0
915,830	+		GFF921	0.12	-0.8
915,837	+		GFF921	0.13	-2.2
915,837	+		GFF921	0.13	-0.7
915,837	+		GFF921	0.13	+0.0
915,837	+		GFF921	0.13	-2.2
915,847	+		GFF921	0.14	+1.1
915,847	+		GFF921	0.14	-0.5
915,847	+		GFF921	0.14	-0.2
915,847	+		GFF921	0.14	+1.1
915,855	-		GFF921	0.14	-0.4
915,855	-		GFF921	0.14	-0.8
915,855	-		GFF921	0.14	-1.8
915,855	-		GFF921	0.14	-0.2
915,855	-		GFF921	0.14	+0.0
915,855	-		GFF921	0.14	+1.1
915,881	+		GFF921	0.16	-1.2
915,881	+		GFF921	0.16	-0.6
915,889	-		GFF921	0.17	-0.6
915,922	+		GFF921	0.19	+1.0
915,930	-		GFF921	0.20	-1.4
915,943	-		GFF921	0.21	-1.6
915,943	-		GFF921	0.21	-1.6
915,943	-		GFF921	0.21	+0.6
915,950	+		GFF921	0.21	-1.4
915,950	+		GFF921	0.21	-0.1
915,950	+		GFF921	0.21	-0.1
915,950	+		GFF921	0.21	-0.4
915,955	-		GFF921	0.22	+0.5
915,958	-		GFF921	0.22	+0.1
915,958	-		GFF921	0.22	-0.5
915,958	-		GFF921	0.22	-0.0
915,958	-		GFF921	0.22	-2.2
915,958	-		GFF921	0.22	-0.3
915,958	-		GFF921	0.22	-0.3
915,958	-		GFF921	0.22	+0.6
915,958	-		GFF921	0.22	-1.2
915,958	-		GFF921	0.22	-1.4
915,958	-		GFF921	0.22	+0.8
915,958	-		GFF921	0.22	-0.7
915,972	-		GFF921	0.23	-1.0
915,975	-		GFF921	0.23	+0.5
915,983	+		GFF921	0.24	+1.1
916,008	-		GFF921	0.25	+0.7
916,021	-		GFF921	0.26	-2.1
916,044	+		GFF921	0.28	-3.1
916,094	+		GFF921	0.32	-0.9
916,102	+		GFF921	0.32	-0.4
916,102	-		GFF921	0.32	-0.6
916,107	-		GFF921	0.33	-1.4
916,111	-		GFF921	0.33	-0.3
916,112	-		GFF921	0.33	-1.6
916,121	+		GFF921	0.34	-0.8
916,124	-		GFF921	0.34	-1.0
916,127	+		GFF921	0.34	+0.4
916,127	+		GFF921	0.34	-2.0
916,127	+		GFF921	0.34	-0.1
916,127	+		GFF921	0.34	-1.0
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