Strain Fitness in Sphingobium sp. HT1-2 around GFF918

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
910,712	+				-1.5
910,719	+				-0.3
910,724	+				-1.2
910,724	+				-2.0
910,724	+				+0.2
910,724	+				+0.8
910,724	+				+0.1
910,724	+				-0.1
910,724	+				+0.0
910,724	+				-2.0
910,724	+				-0.3
910,724	+				-0.7
910,724	+				+0.4
910,724	+				+0.3
910,724	+				-0.3
910,727	-				-0.1
910,727	-				-0.2
910,727	-				-1.4
910,732	-				-1.4
910,732	-				+0.5
910,732	-				-0.6
910,732	-				-0.6
910,732	-				+0.0
910,732	-				-0.5
910,732	-				+0.4
910,732	-				-0.7
910,732	-				+0.3
910,732	-				+1.0
910,732	-				-0.0
910,732	-				-2.0
910,732	-				-0.4
910,732	-				+1.3
910,732	-				-0.3
910,732	-				+0.4
910,732	-				+0.2
910,732	-				-0.9
910,732	-				+0.2
910,732	-				+0.8
910,732	-				+0.3
910,732	-				-0.5
910,732	-				-0.2
910,732	-				+0.6
910,732	-				-1.1
910,732	-				+0.0
910,732	-				+0.2
910,732	-				-0.8
910,732	-				+0.3
910,732	-				-0.8
910,732	-				-1.2
910,732	-				+0.2
910,732	-				+0.1
910,732	-				-0.2
910,734	+				-1.7
910,748	-				-0.5
910,758	-				-0.7
910,766	+				-0.1
910,766	+				-1.4
910,766	+				+0.2
910,774	-				-0.2
910,774	-				-0.9
910,810	-		GFF917	0.13	-0.4
910,822	+		GFF917	0.14	-0.5
910,835	-		GFF917	0.15	-0.0
910,863	-		GFF917	0.18	-0.6
910,863	-		GFF917	0.18	-0.1
910,863	-		GFF917	0.18	-0.4
910,877	+		GFF917	0.20	-0.7
910,878	+		GFF917	0.20	-1.0
910,883	+		GFF917	0.20	+0.6
910,886	-		GFF917	0.21	+0.1
910,896	-		GFF917	0.22	-1.2
910,920	-		GFF917	0.24	-2.8
910,931	+		GFF917	0.25	+0.6
910,939	-		GFF917	0.26	-0.5
910,944	+		GFF917	0.27	+0.3
910,944	-		GFF917	0.27	+0.5
910,945	-		GFF917	0.27	-1.4
910,945	-		GFF917	0.27	+0.1
910,945	-		GFF917	0.27	-1.4
910,959	+		GFF917	0.28	-0.6
910,959	+		GFF917	0.28	-1.8
910,959	+		GFF917	0.28	-0.8
910,959	+		GFF917	0.28	-1.2
910,959	+		GFF917	0.28	-0.2
910,964	+		GFF917	0.29	-0.2
910,964	+		GFF917	0.29	-1.4
910,964	+		GFF917	0.29	-2.5
910,967	-		GFF917	0.29	+0.6
910,967	-		GFF917	0.29	+0.4
910,967	-		GFF917	0.29	-0.7
910,967	-		GFF917	0.29	-0.4
910,972	-		GFF917	0.30	+0.5
910,972	-		GFF917	0.30	-0.6
910,972	-		GFF917	0.30	-0.6
910,972	-		GFF917	0.30	-2.1
910,977	+		GFF917	0.30	-0.1
910,977	-		GFF917	0.30	+0.6
911,003	+		GFF917	0.33	-0.5
911,004	-		GFF917	0.33	+0.1
911,047	+		GFF917	0.38	+2.4
911,047	+		GFF917	0.38	-1.2
911,047	+		GFF917	0.38	-1.4
911,055	-		GFF917	0.38	+0.3
911,055	-		GFF917	0.38	-0.9
911,056	-		GFF917	0.39	+1.6
911,066	-		GFF917	0.40	-1.1
911,066	-		GFF917	0.40	-0.5
911,086	+		GFF917	0.42	-0.6
911,094	-		GFF917	0.43	-2.0
911,094	-		GFF917	0.43	-1.5
911,094	-		GFF917	0.43	-1.0
911,094	-		GFF917	0.43	+0.3
911,121	+		GFF917	0.45	+0.7
911,123	+		GFF917	0.46	-2.6
911,123	+		GFF917	0.46	+0.0
911,123	+		GFF917	0.46	-1.2
911,123	+		GFF917	0.46	+0.6
911,131	-		GFF917	0.46	-0.0
911,131	-		GFF917	0.46	-0.3
911,150	-		GFF917	0.48	-0.1
911,168	+		GFF917	0.50	+0.3
911,183	-		GFF917	0.52	+0.9
911,189	+		GFF917	0.53	-1.4
911,204	-		GFF917	0.54	+1.3
911,224	+		GFF917	0.56	-0.5
911,224	-		GFF917	0.56	-1.1
911,231	-		GFF917	0.57	-0.2
911,231	-		GFF917	0.57	+0.2
911,276	-		GFF917	0.62	-1.3
911,284	+		GFF917	0.63	+0.0
911,294	+		GFF917	0.64	+0.2
911,294	+		GFF917	0.64	+0.3
911,294	+		GFF917	0.64	+0.5
911,294	+		GFF917	0.64	-1.4
911,294	+		GFF917	0.64	-0.2
911,294	+		GFF917	0.64	-0.2
911,294	+		GFF917	0.64	+0.6
911,294	+		GFF917	0.64	-1.4
911,294	+		GFF917	0.64	-0.1
911,294	+		GFF917	0.64	-1.4
911,294	+		GFF917	0.64	+0.1
911,294	+		GFF917	0.64	+0.8
911,294	+		GFF917	0.64	-1.1
911,294	+		GFF917	0.64	+0.4
911,294	+		GFF917	0.64	+0.2
911,294	+		GFF917	0.64	-1.0
911,294	+		GFF917	0.64	-0.6
911,294	+		GFF917	0.64	+1.0
911,294	+		GFF917	0.64	+0.3
911,294	+		GFF917	0.64	-1.0
911,294	+		GFF917	0.64	+1.0
911,294	+		GFF917	0.64	+1.1
911,302	-		GFF917	0.64	+0.0
911,302	-		GFF917	0.64	+0.9
911,302	-		GFF917	0.64	-2.0
911,302	-		GFF917	0.64	+1.1
911,302	-		GFF917	0.64	-1.9
911,302	-		GFF917	0.64	-0.7
911,302	-		GFF917	0.64	-0.9
911,302	-		GFF917	0.64	+1.6
911,302	-		GFF917	0.64	-1.6
911,302	-		GFF917	0.64	-2.2
911,302	-		GFF917	0.64	-0.0
911,302	-		GFF917	0.64	-0.3
911,302	-		GFF917	0.64	-0.7
911,302	-		GFF917	0.64	-1.5
911,305	+		GFF917	0.65	+0.1
911,305	+		GFF917	0.65	-0.1
911,305	+		GFF917	0.65	-0.1
911,313	-		GFF917	0.66	+0.2
911,344	+		GFF917	0.69	-0.6
911,352	-		GFF917	0.70	-0.2
911,352	-		GFF917	0.70	+0.3
911,352	-		GFF917	0.70	-0.3
911,352	-		GFF917	0.70	-0.9
911,411	-		GFF917	0.76	+0.4
911,429	+		GFF917	0.78	-0.6
911,429	-		GFF917	0.78	-0.2
911,442	+		GFF917	0.79	-0.5
911,454	+		GFF917	0.80	+0.3
911,454	+		GFF917	0.80	+0.3
911,488	-		GFF917	0.84	+0.6
911,504	+		GFF917	0.86	-1.6
911,512	-		GFF917	0.87	-0.4
911,512	-		GFF917	0.87	+0.9
911,512	-		GFF917	0.87	+0.4
911,519	+		GFF917	0.87	-1.1
911,519	+		GFF917	0.87	+1.0
911,519	+		GFF917	0.87	-0.5
911,527	+		GFF917	0.88	-1.5
911,527	-		GFF917	0.88	+1.0
911,527	-		GFF917	0.88	+0.7
911,527	-		GFF917	0.88	-0.0
911,527	-		GFF917	0.88	-1.7
911,535	-		GFF917	0.89	-0.3
911,535	-		GFF917	0.89	-0.5
911,553	+				-0.3
911,561	-				-0.5
911,563	+				+0.5
911,563	+				-1.0
911,563	+				+0.1
911,563	+				-0.2
911,563	+				+1.1
911,563	+				-0.4
911,563	+				-1.6
911,565	+				+0.6
911,565	+				+0.6
911,565	+				-0.8
911,565	+				+0.6
911,571	-				-0.5
911,571	-				+0.8
911,571	-				-1.2
911,571	-				-1.6
911,571	-				-1.0
911,571	-				-0.4
911,571	-				-2.1
911,573	-				-0.4
911,573	-				+0.6
911,573	-				-1.6
911,573	-				-0.4
911,575	+				+0.3
911,578	-				-1.5
911,578	-				+0.0
911,578	-				+0.3
911,586	+				-1.2
911,586	+				-0.1
911,591	+				+0.5
911,594	-				-1.7
911,594	-				+0.1
911,596	+				-1.2
911,596	+				-0.1
911,596	+				+0.0
911,596	+				-0.8
911,597	+				+0.3
911,597	+				-2.4
911,597	+				-0.6
911,597	+				+1.2
911,602	+				-0.0
911,604	-				+0.7
911,605	+				-1.0
911,605	-				-0.1
911,610	+				-0.8
911,615	+				-0.1
911,618	-				-0.3
911,623	-				+1.1
911,628	-				+1.9
911,628	-				+0.5
911,633	+				+0.2
911,633	+				+0.6
911,636	-				-1.8
911,637	-				-0.8
911,642	+				+0.7
911,647	+				+0.9
911,647	+				-1.9
911,647	+				+0.3
911,647	+				-2.6
911,647	+				+0.5
911,647	+				+0.2
911,647	+				+0.2
911,647	+				-0.2
911,647	+				+0.4
911,647	+				+0.6
911,647	+				+0.1
911,647	-				+0.8
911,655	-				-1.0
911,655	-				-1.5
911,655	-				-1.6
911,655	-				+0.2
911,655	-				-0.4
911,655	-				-0.5
911,655	-				+1.0
911,655	-				+0.2
911,655	-				-1.2
911,655	-				-0.8
911,655	-				-0.2
911,655	-				+0.7
911,655	-				+0.5
911,655	-				-1.4
911,655	-				-0.0
911,656	-				+0.7
911,656	-				+0.9
911,683	-				-0.2
911,685	+				-0.4
911,685	+				-0.8
911,688	-				-0.2
911,693	-				-0.1
911,693	-				-0.3
911,701	-				-0.4
911,713	+				+0.8
911,713	+				-1.4
911,716	-				+1.0
911,718	+				-1.3
911,721	-				+0.1
911,721	-				-1.6
911,723	+				+0.6
911,723	+				+0.4
911,726	-				-1.5
911,731	-				+0.8
911,735	+				-0.1
911,760	+				-1.7
911,760	+				-0.8
911,764	+				-0.8
911,764	+				+1.4
911,764	+				-0.9
911,764	+				+0.1
911,768	-				-1.6
911,768	-				-1.3
911,768	-				-1.0
911,770	-				-1.2
911,772	-				+0.8
911,772	-				-1.1
911,777	-				-0.1
911,778	-				-1.4
911,825	+				-2.0
911,835	+				-1.0
911,848	+				-1.9
911,848	+				-0.8
911,851	+				-0.3
911,851	+				+1.6
911,859	-				-1.6
911,871	+		GFF918	0.10	-0.1
911,887	-		GFF918	0.11	+0.6
911,937	-		GFF918	0.14	-1.5
911,969	+		GFF918	0.16	+0.5
911,972	-		GFF918	0.17	+1.0
911,980	-		GFF918	0.17	+0.6
911,987	+		GFF918	0.17	+0.5
911,987	+		GFF918	0.17	+0.2
911,987	+		GFF918	0.17	+0.6
911,988	+		GFF918	0.18	-0.9
911,990	-		GFF918	0.18	+1.3
911,995	-		GFF918	0.18	-0.3
911,995	-		GFF918	0.18	-0.1
912,006	+		GFF918	0.19	+0.1
912,006	+		GFF918	0.19	+0.2
912,006	+		GFF918	0.19	+0.4
912,010	+		GFF918	0.19	-0.1
912,013	-		GFF918	0.19	-0.5
912,014	-		GFF918	0.19	-0.6
912,014	-		GFF918	0.19	+0.0
912,051	-		GFF918	0.22	+0.8
912,053	-		GFF918	0.22	-0.2
912,087	-		GFF918	0.24	+0.1
912,102	-		GFF918	0.25	-0.2
912,109	-		GFF918	0.25	+0.5
912,111	+		GFF918	0.25	-0.4
912,111	+		GFF918	0.25	+0.5
912,111	+		GFF918	0.25	-0.9
912,111	+		GFF918	0.25	-0.1
912,111	+		GFF918	0.25	+0.4
912,111	+		GFF918	0.25	-2.3
912,113	+		GFF918	0.26	+0.3
912,119	-		GFF918	0.26	+0.2
912,119	-		GFF918	0.26	+0.4
912,119	-		GFF918	0.26	-2.6
912,128	-		GFF918	0.26	-1.4
912,128	-		GFF918	0.26	+0.9
912,168	-		GFF918	0.29	+0.4
912,175	+		GFF918	0.29	+0.1
912,183	-		GFF918	0.30	-2.2
912,183	-		GFF918	0.30	+0.0
912,183	-		GFF918	0.30	+0.3
912,208	+		GFF918	0.32	+0.1
912,216	-		GFF918	0.32	+0.4
912,230	+		GFF918	0.33	-1.4
912,230	+		GFF918	0.33	+0.4
912,230	+		GFF918	0.33	-0.7
912,237	+		GFF918	0.33	+0.5
912,245	-		GFF918	0.34	-1.8
912,245	-		GFF918	0.34	+1.2
912,253	+		GFF918	0.34	-1.2
912,264	+		GFF918	0.35	+0.9
912,272	-		GFF918	0.36	+0.1
912,279	-		GFF918	0.36	-2.1
912,281	+		GFF918	0.36	+0.0
912,310	-		GFF918	0.38	-0.6
912,325	+		GFF918	0.39	-0.5
912,339	+		GFF918	0.40	+0.2
912,344	+		GFF918	0.40	-1.2
912,352	+		GFF918	0.41	-0.4
912,352	-		GFF918	0.41	-0.3
912,357	+		GFF918	0.41	-1.0
912,361	+		GFF918	0.41	-0.0
912,397	-		GFF918	0.44	+1.0
912,401	+		GFF918	0.44	-2.4
912,401	+		GFF918	0.44	-0.4
912,403	+		GFF918	0.44	-1.5
912,409	-		GFF918	0.44	+0.6
912,409	-		GFF918	0.44	+0.7
912,450	-		GFF918	0.47	+0.4
912,466	+		GFF918	0.48	+0.0
912,474	-		GFF918	0.48	-0.2
912,478	+		GFF918	0.49	-1.6
912,480	+		GFF918	0.49	-1.4
912,510	-		GFF918	0.51	+0.5
912,516	+		GFF918	0.51	+0.9
912,537	+		GFF918	0.52	+0.3
912,537	+		GFF918	0.52	+0.1
912,537	+		GFF918	0.52	+0.8
912,537	+		GFF918	0.52	+0.7
912,558	+		GFF918	0.54	-1.1
912,566	+		GFF918	0.54	-0.6
912,566	-		GFF918	0.54	-0.4
912,566	-		GFF918	0.54	+0.3
912,603	-		GFF918	0.57	-0.0
912,613	-		GFF918	0.57	-0.1
912,634	-		GFF918	0.59	-0.0
912,649	+		GFF918	0.60	+0.2
912,654	+		GFF918	0.60	+0.8
912,656	+		GFF918	0.60	+0.0
912,662	+		GFF918	0.60	-1.1
912,662	+		GFF918	0.60	-0.5
912,670	-		GFF918	0.61	-1.9
912,670	-		GFF918	0.61	+1.7
912,672	-		GFF918	0.61	-1.3
912,672	-		GFF918	0.61	+1.6
912,695	-		GFF918	0.63	+1.3
912,696	-		GFF918	0.63	+0.3
912,704	-		GFF918	0.63	-0.1
912,714	-		GFF918	0.64	-0.4
912,723	+		GFF918	0.64	+0.6
912,776	+		GFF918	0.68	-1.5
912,777	-		GFF918	0.68	-1.2
912,797	-		GFF918	0.69	-0.8
912,799	+		GFF918	0.69	+0.1
912,799	+		GFF918	0.69	+0.5
912,810	+		GFF918	0.70	-1.0
912,818	-		GFF918	0.70	+0.3
912,823	+		GFF918	0.71	-1.2
912,831	-		GFF918	0.71	+1.0
912,858	+		GFF918	0.73	-0.4
912,877	-		GFF918	0.74	-0.2
912,888	+		GFF918	0.75	-1.2
912,888	+		GFF918	0.75	-2.0
912,893	+		GFF918	0.75	-0.8
912,893	+		GFF918	0.75	+0.2
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914,252	+				+0.3
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914,280	+				-1.5
914,280	+				+0.9
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