Strain Fitness in Sphingobium sp. HT1-2 around GFF880

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF879 and GFF880 are separated by 447 nucleotidesGFF880 and GFF881 overlap by 4 nucleotidesGFF881 and GFF882 overlap by 4 nucleotides GFF879 - CobW GTPase involved in cobalt insertion for B12 biosynthesis, at 870,373 to 871,425 GFF879 GFF880 - PsbAd protein, at 871,873 to 872,250 GFF880 GFF881 - Maleylacetoacetate isomerase (EC 5.2.1.2) @ Glutathione S-transferase, zeta (EC 2.5.1.18), at 872,247 to 872,891 GFF881 GFF882 - Fumarylacetoacetase (EC 3.7.1.2), at 872,888 to 874,180 GFF882 Position (kb) 871 872 873Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 870.895 kb on - strand, within GFF879at 871.016 kb on - strand, within GFF879at 871.016 kb on - strand, within GFF879at 871.021 kb on - strand, within GFF879at 871.031 kb on + strand, within GFF879at 871.039 kb on - strand, within GFF879at 871.049 kb on - strand, within GFF879at 871.076 kb on + strand, within GFF879at 871.076 kb on + strand, within GFF879at 871.076 kb on + strand, within GFF879at 871.076 kb on + strand, within GFF879at 871.076 kb on + strand, within GFF879at 871.076 kb on + strand, within GFF879at 871.084 kb on - strand, within GFF879at 871.084 kb on - strand, within GFF879at 871.084 kb on - strand, within GFF879at 871.084 kb on - strand, within GFF879at 871.084 kb on - strand, within GFF879at 871.093 kb on + strand, within GFF879at 871.093 kb on + strand, within GFF879at 871.096 kb on - strand, within GFF879at 871.096 kb on - strand, within GFF879at 871.098 kb on + strand, within GFF879at 871.104 kb on + strand, within GFF879at 871.104 kb on + strand, within GFF879at 871.107 kb on - strand, within GFF879at 871.147 kb on + strand, within GFF879at 871.160 kb on + strand, within GFF879at 871.168 kb on - strand, within GFF879at 871.190 kb on + strand, within GFF879at 871.190 kb on + strand, within GFF879at 871.196 kb on - strand, within GFF879at 871.198 kb on - strand, within GFF879at 871.198 kb on - strand, within GFF879at 871.228 kb on - strand, within GFF879at 871.238 kb on - strand, within GFF879at 871.263 kb on - strand, within GFF879at 871.308 kb on + strand, within GFF879at 871.308 kb on + strand, within GFF879at 871.308 kb on + strand, within GFF879at 871.316 kb on - strand, within GFF879at 871.343 kb on + strandat 871.357 kb on + strandat 871.365 kb on - strandat 871.366 kb on - strandat 871.415 kb on + strandat 871.415 kb on + strandat 871.415 kb on + strandat 871.415 kb on + strandat 871.415 kb on + strandat 871.417 kb on - strandat 871.423 kb on - strandat 871.423 kb on - strandat 871.423 kb on - strandat 871.434 kb on - strandat 871.524 kb on - strandat 871.538 kb on + strandat 871.553 kb on - strandat 871.570 kb on - strandat 871.570 kb on - strandat 871.584 kb on - strandat 871.595 kb on - strandat 871.595 kb on - strandat 871.596 kb on - strandat 871.598 kb on + strandat 871.606 kb on - strandat 871.607 kb on - strandat 871.658 kb on - strandat 871.685 kb on - strandat 871.705 kb on - strandat 871.711 kb on + strandat 871.719 kb on + strandat 871.734 kb on - strandat 871.747 kb on + strandat 871.747 kb on + strandat 871.747 kb on + strandat 871.750 kb on - strandat 871.755 kb on - strandat 871.757 kb on - strandat 871.767 kb on - strandat 871.767 kb on - strandat 871.769 kb on + strandat 871.777 kb on - strandat 871.802 kb on + strandat 871.802 kb on + strandat 871.812 kb on + strandat 871.843 kb on - strandat 871.869 kb on + strandat 871.879 kb on + strandat 871.879 kb on + strandat 871.887 kb on - strandat 871.887 kb on - strandat 871.887 kb on - strandat 871.887 kb on - strandat 871.925 kb on - strand, within GFF880at 871.936 kb on + strand, within GFF880at 871.936 kb on - strand, within GFF880at 871.939 kb on - strand, within GFF880at 871.941 kb on + strand, within GFF880at 871.944 kb on - strand, within GFF880at 871.954 kb on - strand, within GFF880at 871.959 kb on - strand, within GFF880at 871.959 kb on - strand, within GFF880at 871.970 kb on - strand, within GFF880at 871.978 kb on - strand, within GFF880at 872.058 kb on + strand, within GFF880at 872.068 kb on + strand, within GFF880at 872.126 kb on - strand, within GFF880at 872.126 kb on - strand, within GFF880at 872.154 kb on - strand, within GFF880at 872.219 kb on + strandat 872.230 kb on - strandat 872.248 kb on - strandat 872.300 kb on - strandat 872.300 kb on - strandat 872.323 kb on + strand, within GFF881at 872.323 kb on + strand, within GFF881at 872.323 kb on + strand, within GFF881at 872.331 kb on - strand, within GFF881at 872.338 kb on + strand, within GFF881at 872.348 kb on + strand, within GFF881at 872.371 kb on + strand, within GFF881at 872.371 kb on + strand, within GFF881at 872.371 kb on + strand, within GFF881at 872.374 kb on - strand, within GFF881at 872.376 kb on - strand, within GFF881at 872.376 kb on - strand, within GFF881at 872.387 kb on + strand, within GFF881at 872.387 kb on + strand, within GFF881at 872.397 kb on - strand, within GFF881at 872.425 kb on - strand, within GFF881at 872.431 kb on - strand, within GFF881at 872.432 kb on - strand, within GFF881at 872.432 kb on - strand, within GFF881at 872.432 kb on - strand, within GFF881at 872.462 kb on - strand, within GFF881at 872.466 kb on + strand, within GFF881at 872.466 kb on + strand, within GFF881at 872.471 kb on + strand, within GFF881at 872.477 kb on + strand, within GFF881at 872.477 kb on + strand, within GFF881at 872.485 kb on - strand, within GFF881at 872.485 kb on - strand, within GFF881at 872.489 kb on + strand, within GFF881at 872.494 kb on + strand, within GFF881at 872.505 kb on + strand, within GFF881at 872.573 kb on + strand, within GFF881at 872.607 kb on + strand, within GFF881at 872.637 kb on + strand, within GFF881at 872.648 kb on + strand, within GFF881at 872.648 kb on + strand, within GFF881at 872.648 kb on + strand, within GFF881at 872.656 kb on - strand, within GFF881at 872.656 kb on - strand, within GFF881at 872.671 kb on + strand, within GFF881at 872.671 kb on - strand, within GFF881at 872.683 kb on + strand, within GFF881at 872.688 kb on + strand, within GFF881at 872.691 kb on - strand, within GFF881at 872.697 kb on - strand, within GFF881at 872.702 kb on - strand, within GFF881at 872.710 kb on + strand, within GFF881at 872.710 kb on + strand, within GFF881at 872.718 kb on - strand, within GFF881at 872.720 kb on - strand, within GFF881at 872.725 kb on + strand, within GFF881at 872.764 kb on - strand, within GFF881at 872.776 kb on + strand, within GFF881at 872.784 kb on - strand, within GFF881at 872.784 kb on - strand, within GFF881at 872.784 kb on - strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.786 kb on + strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.794 kb on - strand, within GFF881at 872.796 kb on + strand, within GFF881at 872.798 kb on + strand, within GFF881at 872.798 kb on + strand, within GFF881at 872.804 kb on - strand, within GFF881at 872.809 kb on - strand, within GFF881at 872.817 kb on + strand, within GFF881at 872.817 kb on + strand, within GFF881at 872.823 kb on - strand, within GFF881at 872.825 kb on - strand, within GFF881at 872.866 kb on - strandat 872.876 kb on + strandat 872.876 kb on + strandat 872.876 kb on + strandat 872.876 kb on + strandat 872.884 kb on - strandat 872.898 kb on + strandat 872.920 kb on + strandat 872.928 kb on - strandat 872.943 kb on - strandat 872.968 kb on + strandat 872.968 kb on + strandat 872.976 kb on - strandat 872.976 kb on - strandat 872.989 kb on + strandat 873.042 kb on + strand, within GFF882at 873.052 kb on + strand, within GFF882at 873.070 kb on - strand, within GFF882at 873.070 kb on - strand, within GFF882at 873.070 kb on - strand, within GFF882at 873.070 kb on - strand, within GFF882at 873.070 kb on - strand, within GFF882at 873.109 kb on - strand, within GFF882at 873.142 kb on + strand, within GFF882at 873.168 kb on + strand, within GFF882at 873.168 kb on + strand, within GFF882at 873.176 kb on - strand, within GFF882at 873.178 kb on - strand, within GFF882at 873.190 kb on + strand, within GFF882at 873.198 kb on - strand, within GFF882at 873.198 kb on - strand, within GFF882at 873.205 kb on - strand, within GFF882at 873.217 kb on + strand, within GFF882at 873.217 kb on + strand, within GFF882at 873.225 kb on - strand, within GFF882at 873.236 kb on - strand, within GFF882

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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870,895 - GFF879 0.50 -1.4
871,016 - GFF879 0.61 -0.8
871,016 - GFF879 0.61 -3.4
871,021 - GFF879 0.62 -3.3
871,031 + GFF879 0.62 -2.6
871,039 - GFF879 0.63 -1.8
871,049 - GFF879 0.64 -1.2
871,076 + GFF879 0.67 -2.0
871,076 + GFF879 0.67 -1.5
871,076 + GFF879 0.67 -1.4
871,076 + GFF879 0.67 -1.4
871,076 + GFF879 0.67 -1.4
871,076 + GFF879 0.67 -1.7
871,084 - GFF879 0.68 -1.6
871,084 - GFF879 0.68 -1.2
871,084 - GFF879 0.68 -1.4
871,084 - GFF879 0.68 -1.4
871,084 - GFF879 0.68 -1.6
871,093 + GFF879 0.68 -2.2
871,093 + GFF879 0.68 -1.7
871,096 - GFF879 0.69 -2.1
871,096 - GFF879 0.69 +0.5
871,098 + GFF879 0.69 -1.9
871,104 + GFF879 0.69 -1.9
871,104 + GFF879 0.69 -1.2
871,107 - GFF879 0.70 -1.4
871,147 + GFF879 0.74 -1.2
871,160 + GFF879 0.75 -1.4
871,168 - GFF879 0.75 -0.5
871,190 + GFF879 0.78 -2.2
871,190 + GFF879 0.78 -2.5
871,196 - GFF879 0.78 -2.9
871,198 - GFF879 0.78 -0.5
871,198 - GFF879 0.78 -2.4
871,228 - GFF879 0.81 -1.9
871,238 - GFF879 0.82 -0.5
871,263 - GFF879 0.85 -1.5
871,308 + GFF879 0.89 -1.9
871,308 + GFF879 0.89 -2.3
871,308 + GFF879 0.89 -0.7
871,316 - GFF879 0.90 -1.2
871,343 + -0.0
871,357 + -1.2
871,365 - -2.9
871,366 - -1.9
871,415 + -1.5
871,415 + -2.2
871,415 + -1.2
871,415 + -1.8
871,415 + -1.9
871,417 - -0.1
871,423 - -1.6
871,423 - -1.2
871,423 - -2.4
871,434 - -0.4
871,524 - -1.8
871,538 + -0.9
871,553 - -1.8
871,570 - -2.4
871,570 - -0.3
871,584 - -1.6
871,595 - +0.3
871,595 - -0.8
871,596 - -0.6
871,598 + -1.9
871,606 - -2.0
871,607 - -2.0
871,658 - +0.3
871,685 - -0.9
871,705 - -0.5
871,711 + -2.6
871,719 + -1.7
871,734 - +0.2
871,747 + -1.9
871,747 + -1.7
871,747 + -2.3
871,750 - -0.6
871,755 - -0.4
871,757 - +1.3
871,767 - +1.1
871,767 - -1.1
871,769 + -1.1
871,777 - +1.0
871,802 + -1.8
871,802 + -0.5
871,812 + -1.6
871,843 - -0.7
871,869 + -2.1
871,879 + -2.7
871,879 + -0.4
871,887 - +0.5
871,887 - -2.4
871,887 - +0.9
871,887 - -2.0
871,925 - GFF880 0.14 +0.8
871,936 + GFF880 0.17 -0.4
871,936 - GFF880 0.17 -0.9
871,939 - GFF880 0.17 -0.4
871,941 + GFF880 0.18 +0.3
871,944 - GFF880 0.19 -0.1
871,954 - GFF880 0.21 -0.7
871,959 - GFF880 0.23 -1.0
871,959 - GFF880 0.23 +0.2
871,970 - GFF880 0.26 -1.5
871,978 - GFF880 0.28 +0.9
872,058 + GFF880 0.49 -0.0
872,068 + GFF880 0.52 -1.6
872,126 - GFF880 0.67 -1.4
872,126 - GFF880 0.67 -0.3
872,154 - GFF880 0.74 -0.2
872,219 + -1.9
872,230 - -0.2
872,248 - +0.0
872,300 - +0.4
872,300 - -0.5
872,323 + GFF881 0.12 +0.3
872,323 + GFF881 0.12 -1.3
872,323 + GFF881 0.12 -0.9
872,331 - GFF881 0.13 -1.4
872,338 + GFF881 0.14 +0.1
872,348 + GFF881 0.16 -0.4
872,371 + GFF881 0.19 +0.8
872,371 + GFF881 0.19 +0.4
872,371 + GFF881 0.19 +1.0
872,374 - GFF881 0.20 -0.8
872,376 - GFF881 0.20 -0.9
872,376 - GFF881 0.20 -0.1
872,387 + GFF881 0.22 -1.1
872,387 + GFF881 0.22 -0.5
872,397 - GFF881 0.23 -0.5
872,425 - GFF881 0.28 -0.7
872,431 - GFF881 0.29 -0.0
872,432 - GFF881 0.29 -1.4
872,432 - GFF881 0.29 -1.5
872,432 - GFF881 0.29 -0.8
872,462 - GFF881 0.33 +0.3
872,466 + GFF881 0.34 -0.5
872,466 + GFF881 0.34 -0.9
872,471 + GFF881 0.35 -1.2
872,477 + GFF881 0.36 -1.4
872,477 + GFF881 0.36 +0.2
872,485 - GFF881 0.37 -1.1
872,485 - GFF881 0.37 -1.2
872,489 + GFF881 0.38 +0.0
872,494 + GFF881 0.38 -0.0
872,505 + GFF881 0.40 -0.8
872,573 + GFF881 0.51 -0.4
872,607 + GFF881 0.56 +0.5
872,637 + GFF881 0.60 -0.3
872,648 + GFF881 0.62 -0.4
872,648 + GFF881 0.62 +0.2
872,648 + GFF881 0.62 -1.6
872,656 - GFF881 0.63 -1.4
872,656 - GFF881 0.63 -0.9
872,671 + GFF881 0.66 +0.2
872,671 - GFF881 0.66 +2.0
872,683 + GFF881 0.68 +0.6
872,688 + GFF881 0.68 +0.4
872,691 - GFF881 0.69 -0.2
872,697 - GFF881 0.70 -0.0
872,702 - GFF881 0.71 +1.8
872,710 + GFF881 0.72 +0.9
872,710 + GFF881 0.72 +0.3
872,718 - GFF881 0.73 +0.2
872,720 - GFF881 0.73 -0.0
872,725 + GFF881 0.74 +0.2
872,764 - GFF881 0.80 -0.4
872,776 + GFF881 0.82 -0.3
872,784 - GFF881 0.83 -1.5
872,784 - GFF881 0.83 -0.3
872,784 - GFF881 0.83 -1.4
872,786 + GFF881 0.84 -1.8
872,786 + GFF881 0.84 -2.4
872,786 + GFF881 0.84 +0.3
872,786 + GFF881 0.84 +0.8
872,786 + GFF881 0.84 -1.0
872,786 + GFF881 0.84 -0.9
872,786 + GFF881 0.84 -0.4
872,786 + GFF881 0.84 -0.1
872,786 + GFF881 0.84 +0.6
872,786 + GFF881 0.84 -2.0
872,786 + GFF881 0.84 +0.5
872,786 + GFF881 0.84 +0.2
872,786 + GFF881 0.84 -1.6
872,786 + GFF881 0.84 -0.8
872,786 + GFF881 0.84 +0.6
872,786 + GFF881 0.84 -0.4
872,786 + GFF881 0.84 -0.4
872,786 + GFF881 0.84 +0.0
872,786 + GFF881 0.84 -2.9
872,786 + GFF881 0.84 -0.5
872,794 - GFF881 0.85 -0.6
872,794 - GFF881 0.85 +0.3
872,794 - GFF881 0.85 +0.5
872,794 - GFF881 0.85 -1.2
872,794 - GFF881 0.85 +0.1
872,794 - GFF881 0.85 -0.0
872,794 - GFF881 0.85 +1.1
872,794 - GFF881 0.85 -0.5
872,794 - GFF881 0.85 +0.5
872,794 - GFF881 0.85 -0.6
872,794 - GFF881 0.85 -1.5
872,794 - GFF881 0.85 -0.8
872,794 - GFF881 0.85 -0.2
872,794 - GFF881 0.85 -1.6
872,794 - GFF881 0.85 +1.7
872,794 - GFF881 0.85 -0.5
872,794 - GFF881 0.85 -1.2
872,794 - GFF881 0.85 -0.2
872,794 - GFF881 0.85 +0.4
872,794 - GFF881 0.85 -0.6
872,794 - GFF881 0.85 +1.1
872,794 - GFF881 0.85 -0.5
872,794 - GFF881 0.85 +0.7
872,794 - GFF881 0.85 +1.0
872,794 - GFF881 0.85 -0.2
872,796 + GFF881 0.85 -0.8
872,798 + GFF881 0.85 +0.6
872,798 + GFF881 0.85 -0.1
872,804 - GFF881 0.86 -1.7
872,809 - GFF881 0.87 +0.1
872,817 + GFF881 0.88 -0.6
872,817 + GFF881 0.88 +0.8
872,823 - GFF881 0.89 -0.1
872,825 - GFF881 0.90 +0.9
872,866 - +0.3
872,876 + +0.2
872,876 + -0.3
872,876 + +0.6
872,876 + +0.6
872,884 - +0.7
872,898 + +0.5
872,920 + -1.2
872,928 - +0.3
872,943 - -1.0
872,968 + -0.5
872,968 + +0.7
872,976 - +0.7
872,976 - -0.7
872,989 + +0.3
873,042 + GFF882 0.12 -1.4
873,052 + GFF882 0.13 +1.0
873,070 - GFF882 0.14 +0.3
873,070 - GFF882 0.14 +1.0
873,070 - GFF882 0.14 -0.2
873,070 - GFF882 0.14 -0.4
873,070 - GFF882 0.14 +0.8
873,109 - GFF882 0.17 -1.6
873,142 + GFF882 0.20 +1.0
873,168 + GFF882 0.22 -0.9
873,168 + GFF882 0.22 +0.8
873,176 - GFF882 0.22 -0.1
873,178 - GFF882 0.22 -1.6
873,190 + GFF882 0.23 -0.1
873,198 - GFF882 0.24 -0.1
873,198 - GFF882 0.24 +0.3
873,205 - GFF882 0.25 -0.8
873,217 + GFF882 0.25 +1.1
873,217 + GFF882 0.25 +0.1
873,225 - GFF882 0.26 +0.8
873,236 - GFF882 0.27 +0.1

Or see this region's nucleotide sequence