Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF789 and GFF790 are separated by 54 nucleotides GFF790 and GFF791 are separated by 722 nucleotides GFF791 and GFF792 are separated by 842 nucleotides
GFF789 - Lycopene cyclase, at 778,244 to 779,392
GFF789
GFF790 - hypothetical protein, at 779,447 to 779,644
GFF790
GFF791 - hypothetical protein, at 780,367 to 780,528
GFF791
GFF792 - Mobile element protein, at 781,371 to 781,754
GFF792
Position (kb) 780
781 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 779.386 kb on - strand at 779.391 kb on + strand at 779.391 kb on + strand at 779.398 kb on + strand at 779.398 kb on + strand at 779.398 kb on + strand at 779.406 kb on - strand at 779.416 kb on + strand at 779.418 kb on - strand at 779.422 kb on + strand at 779.440 kb on + strand at 779.446 kb on + strand at 779.449 kb on + strand at 779.451 kb on + strand at 779.451 kb on + strand at 779.454 kb on - strand at 779.459 kb on - strand at 779.459 kb on - strand at 779.459 kb on - strand at 779.464 kb on - strand at 779.464 kb on - strand at 779.484 kb on + strand, within GFF790 at 779.490 kb on + strand, within GFF790 at 779.491 kb on + strand, within GFF790 at 779.496 kb on + strand, within GFF790 at 779.497 kb on - strand, within GFF790 at 779.499 kb on - strand, within GFF790 at 779.504 kb on - strand, within GFF790 at 779.516 kb on - strand, within GFF790 at 779.539 kb on + strand, within GFF790 at 779.539 kb on - strand, within GFF790 at 779.541 kb on - strand, within GFF790 at 779.606 kb on + strand, within GFF790 at 779.611 kb on + strand, within GFF790 at 779.641 kb on - strand at 779.651 kb on + strand at 779.673 kb on + strand at 779.673 kb on + strand at 779.673 kb on + strand at 779.681 kb on - strand at 779.685 kb on + strand at 779.723 kb on - strand at 779.729 kb on + strand at 779.785 kb on - strand at 779.788 kb on + strand at 779.794 kb on + strand at 779.794 kb on + strand at 779.802 kb on - strand at 779.802 kb on - strand at 779.830 kb on + strand at 779.830 kb on + strand at 779.830 kb on + strand at 779.831 kb on + strand at 779.831 kb on + strand at 779.831 kb on + strand at 779.831 kb on + strand at 779.831 kb on + strand at 779.831 kb on + strand at 779.832 kb on - strand at 779.832 kb on - strand at 779.832 kb on - strand at 779.837 kb on - strand at 779.838 kb on - strand at 779.838 kb on - strand at 779.839 kb on - strand at 779.839 kb on - strand at 779.839 kb on - strand at 779.844 kb on - strand at 779.851 kb on - strand at 779.857 kb on + strand at 779.863 kb on + strand at 779.873 kb on + strand at 779.904 kb on + strand at 779.924 kb on - strand at 779.928 kb on + strand at 779.928 kb on + strand at 779.971 kb on - strand at 779.991 kb on + strand at 779.991 kb on + strand at 779.999 kb on - strand at 779.999 kb on - strand at 779.999 kb on - strand at 779.999 kb on - strand at 779.999 kb on - strand at 779.999 kb on - strand at 779.999 kb on - strand at 780.004 kb on - strand at 780.007 kb on + strand at 780.007 kb on + strand at 780.007 kb on + strand at 780.007 kb on + strand at 780.007 kb on + strand at 780.007 kb on + strand at 780.007 kb on + strand at 780.008 kb on + strand at 780.015 kb on + strand at 780.015 kb on + strand at 780.015 kb on + strand at 780.015 kb on - strand at 780.015 kb on - strand at 780.015 kb on - strand at 780.015 kb on - strand at 780.016 kb on - strand at 780.018 kb on + strand at 780.032 kb on + strand at 780.038 kb on - strand at 780.055 kb on + strand at 780.081 kb on + strand at 780.095 kb on + strand at 780.136 kb on + strand at 780.136 kb on + strand at 780.136 kb on + strand at 780.136 kb on + strand at 780.136 kb on + strand at 780.141 kb on + strand at 780.141 kb on + strand at 780.141 kb on + strand at 780.141 kb on + strand at 780.143 kb on + strand at 780.144 kb on - strand at 780.144 kb on - strand at 780.144 kb on - strand at 780.149 kb on - strand at 780.149 kb on - strand at 780.149 kb on - strand at 780.149 kb on - strand at 780.151 kb on + strand at 780.151 kb on + strand at 780.174 kb on + strand at 780.174 kb on + strand at 780.174 kb on + strand at 780.174 kb on + strand at 780.174 kb on + strand at 780.175 kb on + strand at 780.179 kb on + strand at 780.179 kb on + strand at 780.179 kb on + strand at 780.179 kb on + strand at 780.182 kb on - strand at 780.182 kb on - strand at 780.182 kb on - strand at 780.182 kb on - strand at 780.182 kb on - strand at 780.182 kb on - strand at 780.183 kb on - strand at 780.187 kb on - strand at 780.228 kb on + strand at 780.246 kb on + strand at 780.265 kb on - strand at 780.265 kb on - strand at 780.265 kb on - strand at 780.276 kb on + strand at 780.276 kb on + strand at 780.276 kb on + strand at 780.276 kb on + strand at 780.276 kb on + strand at 780.276 kb on + strand at 780.276 kb on + strand at 780.276 kb on + strand at 780.284 kb on - strand at 780.284 kb on - strand at 780.284 kb on - strand at 780.284 kb on - strand at 780.284 kb on - strand at 780.284 kb on - strand at 780.284 kb on - strand at 780.284 kb on - strand at 780.284 kb on - strand at 780.284 kb on - strand at 780.284 kb on - strand at 780.284 kb on - strand at 780.284 kb on - strand at 780.333 kb on + strand at 780.340 kb on + strand at 780.341 kb on - strand at 780.341 kb on - strand at 780.341 kb on - strand at 780.350 kb on + strand at 780.350 kb on + strand at 780.358 kb on - strand at 780.365 kb on + strand at 780.365 kb on + strand at 780.365 kb on + strand at 780.365 kb on + strand at 780.373 kb on - strand at 780.373 kb on - strand at 780.373 kb on - strand at 780.380 kb on - strand at 780.399 kb on + strand, within GFF791 at 780.399 kb on + strand, within GFF791 at 780.427 kb on + strand, within GFF791 at 780.427 kb on + strand, within GFF791 at 780.427 kb on + strand, within GFF791 at 780.427 kb on + strand, within GFF791 at 780.427 kb on + strand, within GFF791 at 780.427 kb on + strand, within GFF791 at 780.427 kb on + strand, within GFF791 at 780.427 kb on + strand, within GFF791 at 780.427 kb on + strand, within GFF791 at 780.427 kb on + strand, within GFF791 at 780.427 kb on + strand, within GFF791 at 780.427 kb on + strand, within GFF791 at 780.427 kb on + strand, within GFF791 at 780.434 kb on + strand, within GFF791 at 780.435 kb on - strand, within GFF791 at 780.435 kb on - strand, within GFF791 at 780.435 kb on - strand, within GFF791 at 780.435 kb on - strand, within GFF791 at 780.435 kb on - strand, within GFF791 at 780.435 kb on - strand, within GFF791 at 780.435 kb on - strand, within GFF791 at 780.435 kb on - strand, within GFF791 at 780.435 kb on - strand, within GFF791 at 780.435 kb on - strand, within GFF791 at 780.435 kb on - strand, within GFF791 at 780.446 kb on - strand, within GFF791 at 780.475 kb on - strand, within GFF791 at 780.482 kb on + strand, within GFF791 at 780.495 kb on + strand, within GFF791 at 780.495 kb on + strand, within GFF791 at 780.495 kb on + strand, within GFF791 at 780.495 kb on + strand, within GFF791 at 780.495 kb on + strand, within GFF791 at 780.495 kb on + strand, within GFF791 at 780.495 kb on + strand, within GFF791 at 780.495 kb on + strand, within GFF791 at 780.500 kb on + strand, within GFF791 at 780.503 kb on - strand, within GFF791 at 780.503 kb on - strand, within GFF791 at 780.503 kb on - strand, within GFF791 at 780.503 kb on - strand, within GFF791 at 780.503 kb on - strand, within GFF791 at 780.503 kb on - strand, within GFF791 at 780.503 kb on - strand, within GFF791 at 780.505 kb on + strand, within GFF791 at 780.508 kb on - strand, within GFF791 at 780.508 kb on - strand, within GFF791 at 780.508 kb on - strand, within GFF791 at 780.508 kb on - strand, within GFF791 at 780.537 kb on + strand at 780.537 kb on + strand at 780.540 kb on + strand at 780.554 kb on + strand at 780.556 kb on - strand at 780.573 kb on + strand at 780.578 kb on + strand at 780.591 kb on - strand at 780.594 kb on + strand at 780.602 kb on - strand at 780.623 kb on + strand at 780.623 kb on + strand at 780.623 kb on + strand at 780.623 kb on + strand at 780.623 kb on + strand at 780.623 kb on + strand at 780.631 kb on - strand at 780.631 kb on - strand at 780.650 kb on + strand at 780.650 kb on + strand at 780.658 kb on - strand at 780.658 kb on - strand at 780.658 kb on - strand at 780.672 kb on - strand at 780.673 kb on - strand at 780.684 kb on + strand at 780.697 kb on - strand at 780.707 kb on - strand at 780.707 kb on - strand at 780.707 kb on - strand at 780.792 kb on - strand at 780.802 kb on - strand at 780.969 kb on + strand at 781.062 kb on + strand at 781.062 kb on + strand at 781.070 kb on - strand at 781.097 kb on - strand at 781.097 kb on - strand at 781.112 kb on - strand at 781.141 kb on - strand at 781.150 kb on + strand at 781.158 kb on - strand at 781.232 kb on + strand at 781.236 kb on + strand at 781.236 kb on + strand at 781.236 kb on + strand at 781.236 kb on + strand at 781.236 kb on + strand at 781.236 kb on + strand at 781.244 kb on - strand at 781.244 kb on - strand at 781.244 kb on - strand at 781.246 kb on + strand at 781.249 kb on + strand at 781.254 kb on - strand at 781.254 kb on - strand at 781.265 kb on + strand at 781.277 kb on + strand at 781.347 kb on - strand at 781.384 kb on + strand at 781.403 kb on + strand at 781.403 kb on + strand at 781.403 kb on + strand at 781.403 kb on + strand at 781.403 kb on + strand at 781.406 kb on - strand at 781.411 kb on - strand, within GFF792 at 781.435 kb on - strand, within GFF792 at 781.437 kb on - strand, within GFF792 at 781.451 kb on + strand, within GFF792 at 781.477 kb on - strand, within GFF792 at 781.493 kb on + strand, within GFF792 at 781.493 kb on + strand, within GFF792 at 781.499 kb on + strand, within GFF792 at 781.501 kb on - strand, within GFF792 at 781.501 kb on - strand, within GFF792 at 781.501 kb on - strand, within GFF792 at 781.502 kb on - strand, within GFF792 at 781.511 kb on - strand, within GFF792 at 781.526 kb on - strand, within GFF792
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 779,386 - -0.7 779,391 + -1.4 779,391 + -0.8 779,398 + +0.1 779,398 + -0.7 779,398 + +0.3 779,406 - -1.7 779,416 + +1.3 779,418 - +0.1 779,422 + +0.2 779,440 + +0.8 779,446 + +0.0 779,449 + -0.8 779,451 + -1.6 779,451 + +1.1 779,454 - -0.2 779,459 - -1.3 779,459 - -1.4 779,459 - +0.6 779,464 - -1.1 779,464 - +0.1 779,484 + GFF790 0.19 +0.4 779,490 + GFF790 0.22 +1.3 779,491 + GFF790 0.22 +1.3 779,496 + GFF790 0.25 +0.2 779,497 - GFF790 0.25 -0.8 779,499 - GFF790 0.26 +0.3 779,504 - GFF790 0.29 +1.1 779,516 - GFF790 0.35 +0.3 779,539 + GFF790 0.46 -2.3 779,539 - GFF790 0.46 -1.4 779,541 - GFF790 0.47 -0.8 779,606 + GFF790 0.80 -0.4 779,611 + GFF790 0.83 -1.9 779,641 - -0.0 779,651 + -0.1 779,673 + +1.4 779,673 + -1.4 779,673 + -0.8 779,681 - -1.6 779,685 + +0.3 779,723 - -1.8 779,729 + +1.0 779,785 - -1.1 779,788 + +0.6 779,794 + -0.9 779,794 + +0.1 779,802 - -1.1 779,802 - +2.2 779,830 + -0.4 779,830 + -0.6 779,830 + -0.5 779,831 + +0.6 779,831 + -0.6 779,831 + +1.8 779,831 + -1.8 779,831 + -1.5 779,831 + -0.6 779,832 - -0.2 779,832 - +0.5 779,832 - -0.3 779,837 - -0.2 779,838 - +0.2 779,838 - +0.0 779,839 - -1.4 779,839 - -2.0 779,839 - +0.2 779,844 - +0.1 779,851 - +0.8 779,857 + -0.7 779,863 + +0.6 779,873 + +0.3 779,904 + -2.1 779,924 - -0.4 779,928 + +0.4 779,928 + +0.0 779,971 - -0.9 779,991 + -1.5 779,991 + +0.1 779,999 - +1.9 779,999 - -0.1 779,999 - -0.8 779,999 - +1.2 779,999 - -0.9 779,999 - -0.2 779,999 - +0.1 780,004 - +0.7 780,007 + +0.1 780,007 + -1.2 780,007 + -0.3 780,007 + -0.3 780,007 + -1.7 780,007 + -0.6 780,007 + +0.1 780,008 + -1.7 780,015 + +1.2 780,015 + +1.3 780,015 + -1.2 780,015 - +1.0 780,015 - -2.2 780,015 - -0.4 780,015 - -0.4 780,016 - -0.7 780,018 + -0.0 780,032 + -1.4 780,038 - -0.6 780,055 + -0.5 780,081 + -0.7 780,095 + +0.3 780,136 + +1.2 780,136 + -1.5 780,136 + -1.5 780,136 + +0.5 780,136 + -0.9 780,141 + -0.3 780,141 + -0.6 780,141 + -0.4 780,141 + -0.9 780,143 + +0.7 780,144 - -0.7 780,144 - -0.2 780,144 - +0.6 780,149 - -0.8 780,149 - -0.5 780,149 - -0.6 780,149 - +1.4 780,151 + -2.1 780,151 + +0.5 780,174 + +0.8 780,174 + +1.4 780,174 + -0.0 780,174 + -0.6 780,174 + -1.2 780,175 + +0.7 780,179 + -0.3 780,179 + +0.5 780,179 + +0.4 780,179 + -0.0 780,182 - -0.2 780,182 - +0.8 780,182 - +0.4 780,182 - +0.9 780,182 - -0.3 780,182 - -0.5 780,183 - -1.1 780,187 - -0.2 780,228 + -1.7 780,246 + +1.0 780,265 - -0.6 780,265 - -0.8 780,265 - -0.3 780,276 + +0.3 780,276 + -0.4 780,276 + -1.0 780,276 + +0.4 780,276 + +0.2 780,276 + +0.7 780,276 + -0.9 780,276 + -0.4 780,284 - -0.9 780,284 - +1.1 780,284 - +0.7 780,284 - -1.0 780,284 - +1.4 780,284 - +1.3 780,284 - -1.5 780,284 - +0.6 780,284 - -0.9 780,284 - -0.7 780,284 - -0.2 780,284 - +1.4 780,284 - -0.6 780,333 + +0.1 780,340 + -0.2 780,341 - +0.5 780,341 - -1.2 780,341 - -0.8 780,350 + +0.1 780,350 + +0.5 780,358 - -1.4 780,365 + -1.2 780,365 + +0.1 780,365 + +0.8 780,365 + +0.1 780,373 - -1.2 780,373 - -0.8 780,373 - -1.4 780,380 - +0.5 780,399 + GFF791 0.20 -0.9 780,399 + GFF791 0.20 +0.3 780,427 + GFF791 0.37 +0.3 780,427 + GFF791 0.37 +0.1 780,427 + GFF791 0.37 -0.4 780,427 + GFF791 0.37 -2.6 780,427 + GFF791 0.37 -1.5 780,427 + GFF791 0.37 -1.2 780,427 + GFF791 0.37 -0.6 780,427 + GFF791 0.37 +0.1 780,427 + GFF791 0.37 +1.4 780,427 + GFF791 0.37 +0.9 780,427 + GFF791 0.37 -0.8 780,427 + GFF791 0.37 +0.6 780,427 + GFF791 0.37 +0.1 780,434 + GFF791 0.41 -0.2 780,435 - GFF791 0.42 +0.4 780,435 - GFF791 0.42 -1.4 780,435 - GFF791 0.42 -2.0 780,435 - GFF791 0.42 -0.4 780,435 - GFF791 0.42 -0.8 780,435 - GFF791 0.42 -1.6 780,435 - GFF791 0.42 -0.9 780,435 - GFF791 0.42 +0.6 780,435 - GFF791 0.42 -0.2 780,435 - GFF791 0.42 -0.1 780,435 - GFF791 0.42 -1.7 780,446 - GFF791 0.49 -1.9 780,475 - GFF791 0.67 -0.6 780,482 + GFF791 0.71 -0.6 780,495 + GFF791 0.79 +0.2 780,495 + GFF791 0.79 -1.4 780,495 + GFF791 0.79 -1.9 780,495 + GFF791 0.79 +0.2 780,495 + GFF791 0.79 +0.3 780,495 + GFF791 0.79 +0.3 780,495 + GFF791 0.79 +1.1 780,495 + GFF791 0.79 -1.6 780,500 + GFF791 0.82 +1.1 780,503 - GFF791 0.84 +0.5 780,503 - GFF791 0.84 -1.4 780,503 - GFF791 0.84 -0.1 780,503 - GFF791 0.84 -0.4 780,503 - GFF791 0.84 -2.2 780,503 - GFF791 0.84 -0.1 780,503 - GFF791 0.84 +0.2 780,505 + GFF791 0.85 +0.8 780,508 - GFF791 0.87 -1.4 780,508 - GFF791 0.87 -1.4 780,508 - GFF791 0.87 +0.1 780,508 - GFF791 0.87 -0.3 780,537 + +0.1 780,537 + +0.2 780,540 + -0.7 780,554 + -1.3 780,556 - +0.6 780,573 + -0.1 780,578 + -1.9 780,591 - -0.6 780,594 + -1.4 780,602 - +0.8 780,623 + -1.2 780,623 + -1.2 780,623 + -0.1 780,623 + -1.2 780,623 + +1.1 780,623 + +0.8 780,631 - -1.8 780,631 - -0.1 780,650 + -0.5 780,650 + -1.4 780,658 - -0.2 780,658 - +1.1 780,658 - -1.6 780,672 - +1.4 780,673 - +0.4 780,684 + -0.4 780,697 - -0.8 780,707 - -1.4 780,707 - +1.8 780,707 - +0.7 780,792 - -0.3 780,802 - -0.8 780,969 + +0.4 781,062 + -1.9 781,062 + +1.0 781,070 - -3.6 781,097 - -0.5 781,097 - +0.1 781,112 - +0.8 781,141 - +0.4 781,150 + +0.1 781,158 - -1.2 781,232 + +0.6 781,236 + -1.4 781,236 + -1.3 781,236 + +0.2 781,236 + -0.0 781,236 + -0.8 781,236 + +1.1 781,244 - +0.8 781,244 - -0.4 781,244 - +1.5 781,246 + +0.7 781,249 + +0.1 781,254 - +1.1 781,254 - -0.2 781,265 + +0.2 781,277 + -0.4 781,347 - +1.1 781,384 + +0.5 781,403 + +0.5 781,403 + -0.6 781,403 + +1.2 781,403 + -0.1 781,403 + -1.2 781,406 - -0.2 781,411 - GFF792 0.10 -1.5 781,435 - GFF792 0.17 +0.2 781,437 - GFF792 0.17 -2.1 781,451 + GFF792 0.21 +0.5 781,477 - GFF792 0.28 +0.5 781,493 + GFF792 0.32 +0.2 781,493 + GFF792 0.32 +1.3 781,499 + GFF792 0.33 -0.7 781,501 - GFF792 0.34 -0.7 781,501 - GFF792 0.34 -1.9 781,501 - GFF792 0.34 -0.9 781,502 - GFF792 0.34 -1.5 781,511 - GFF792 0.36 -1.9 781,526 - GFF792 0.40 -0.0
Or see this region's nucleotide sequence