Strain Fitness in Sphingobium sp. HT1-2 around GFF78

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF77 and GFF78 overlap by 4 nucleotidesGFF78 and GFF79 are separated by 96 nucleotides GFF77 - Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79), plant type, at 66,473 to 67,741 GFF77 GFF78 - Putative oxidoreductase, at 67,738 to 68,454 GFF78 GFF79 - Amidophosphoribosyltransferase (EC 2.4.2.14), at 68,551 to 70,029 GFF79 Position (kb) 67 68 69Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 66.758 kb on - strand, within GFF77at 66.763 kb on + strand, within GFF77at 66.783 kb on + strand, within GFF77at 66.783 kb on + strand, within GFF77at 66.783 kb on + strand, within GFF77at 66.791 kb on - strand, within GFF77at 66.791 kb on - strand, within GFF77at 66.794 kb on + strand, within GFF77at 66.811 kb on + strand, within GFF77at 66.811 kb on + strand, within GFF77at 66.811 kb on + strand, within GFF77at 66.811 kb on + strand, within GFF77at 66.811 kb on + strand, within GFF77at 66.811 kb on + strand, within GFF77at 66.811 kb on + strand, within GFF77at 66.811 kb on + strand, within GFF77at 66.811 kb on + strand, within GFF77at 66.811 kb on + strand, within GFF77at 66.819 kb on - strand, within GFF77at 66.819 kb on - strand, within GFF77at 66.819 kb on - strand, within GFF77at 66.830 kb on - strand, within GFF77at 66.858 kb on - strand, within GFF77at 66.858 kb on - strand, within GFF77at 66.901 kb on + strand, within GFF77at 66.904 kb on - strand, within GFF77at 66.949 kb on + strand, within GFF77at 67.009 kb on + strand, within GFF77at 67.009 kb on + strand, within GFF77at 67.014 kb on + strand, within GFF77at 67.052 kb on - strand, within GFF77at 67.054 kb on + strand, within GFF77at 67.070 kb on + strand, within GFF77at 67.080 kb on + strand, within GFF77at 67.080 kb on + strand, within GFF77at 67.088 kb on - strand, within GFF77at 67.116 kb on - strand, within GFF77at 67.131 kb on - strand, within GFF77at 67.142 kb on + strand, within GFF77at 67.151 kb on + strand, within GFF77at 67.151 kb on + strand, within GFF77at 67.186 kb on + strand, within GFF77at 67.187 kb on - strand, within GFF77at 67.191 kb on + strand, within GFF77at 67.191 kb on + strand, within GFF77at 67.191 kb on - strand, within GFF77at 67.222 kb on + strand, within GFF77at 67.243 kb on - strand, within GFF77at 67.246 kb on - strand, within GFF77at 67.248 kb on - strand, within GFF77at 67.248 kb on - strand, within GFF77at 67.248 kb on - strand, within GFF77at 67.271 kb on + strand, within GFF77at 67.303 kb on + strand, within GFF77at 67.311 kb on - strand, within GFF77at 67.314 kb on - strand, within GFF77at 67.338 kb on + strand, within GFF77at 67.338 kb on + strand, within GFF77at 67.338 kb on + strand, within GFF77at 67.385 kb on + strand, within GFF77at 67.458 kb on - strand, within GFF77at 67.459 kb on - strand, within GFF77at 67.472 kb on + strand, within GFF77at 67.518 kb on + strand, within GFF77at 67.518 kb on + strand, within GFF77at 67.518 kb on + strand, within GFF77at 67.522 kb on - strand, within GFF77at 67.527 kb on + strand, within GFF77at 67.586 kb on - strand, within GFF77at 67.647 kb on + strandat 67.666 kb on + strandat 67.690 kb on + strandat 67.698 kb on - strandat 67.719 kb on + strandat 67.721 kb on - strandat 67.721 kb on - strandat 67.731 kb on - strandat 67.744 kb on - strandat 67.755 kb on + strandat 67.755 kb on + strandat 67.755 kb on + strandat 67.755 kb on + strandat 67.755 kb on + strandat 67.772 kb on + strandat 67.811 kb on + strand, within GFF78at 67.820 kb on + strand, within GFF78at 67.820 kb on - strand, within GFF78at 67.821 kb on + strand, within GFF78at 67.829 kb on - strand, within GFF78at 67.830 kb on - strand, within GFF78at 67.853 kb on + strand, within GFF78at 67.853 kb on + strand, within GFF78at 67.874 kb on - strand, within GFF78at 67.880 kb on + strand, within GFF78at 67.895 kb on - strand, within GFF78at 67.921 kb on - strand, within GFF78at 67.929 kb on - strand, within GFF78at 67.964 kb on + strand, within GFF78at 67.974 kb on + strand, within GFF78at 67.974 kb on + strand, within GFF78at 68.001 kb on + strand, within GFF78at 68.001 kb on + strand, within GFF78at 68.001 kb on + strand, within GFF78at 68.001 kb on + strand, within GFF78at 68.009 kb on - strand, within GFF78at 68.009 kb on - strand, within GFF78at 68.015 kb on + strand, within GFF78at 68.048 kb on - strand, within GFF78at 68.064 kb on + strand, within GFF78at 68.064 kb on + strand, within GFF78at 68.082 kb on + strand, within GFF78at 68.084 kb on + strand, within GFF78at 68.119 kb on + strand, within GFF78at 68.127 kb on - strand, within GFF78at 68.188 kb on + strand, within GFF78at 68.192 kb on - strand, within GFF78at 68.199 kb on - strand, within GFF78at 68.218 kb on + strand, within GFF78at 68.221 kb on - strand, within GFF78at 68.223 kb on + strand, within GFF78at 68.240 kb on - strand, within GFF78at 68.246 kb on + strand, within GFF78at 68.265 kb on + strand, within GFF78at 68.273 kb on - strand, within GFF78at 68.292 kb on + strand, within GFF78at 68.295 kb on - strand, within GFF78at 68.310 kb on - strand, within GFF78at 68.310 kb on - strand, within GFF78at 68.313 kb on + strand, within GFF78at 68.313 kb on + strand, within GFF78at 68.313 kb on + strand, within GFF78at 68.321 kb on - strand, within GFF78at 68.324 kb on + strand, within GFF78at 68.339 kb on + strand, within GFF78at 68.339 kb on + strand, within GFF78at 68.343 kb on + strand, within GFF78at 68.351 kb on - strand, within GFF78at 68.351 kb on - strand, within GFF78at 68.352 kb on - strand, within GFF78at 68.360 kb on + strand, within GFF78at 68.361 kb on - strand, within GFF78at 68.373 kb on - strand, within GFF78at 68.380 kb on - strand, within GFF78at 68.398 kb on - strandat 68.444 kb on + strandat 68.444 kb on + strandat 68.450 kb on + strandat 68.452 kb on - strandat 68.452 kb on - strandat 68.452 kb on - strandat 68.462 kb on + strandat 68.462 kb on + strandat 68.483 kb on + strandat 68.512 kb on + strandat 68.515 kb on - strandat 68.515 kb on - strandat 68.515 kb on - strandat 68.515 kb on - strandat 68.517 kb on + strandat 68.525 kb on - strandat 68.525 kb on - strandat 68.531 kb on + strandat 68.531 kb on + strandat 68.539 kb on - strandat 68.544 kb on - strandat 68.557 kb on - strandat 68.561 kb on + strandat 68.597 kb on + strandat 68.605 kb on - strandat 68.605 kb on - strandat 68.605 kb on - strandat 68.605 kb on - strandat 68.605 kb on - strandat 68.605 kb on - strandat 68.605 kb on - strandat 68.689 kb on - strandat 68.693 kb on + strandat 68.693 kb on + strandat 68.693 kb on + strandat 68.701 kb on - strand, within GFF79at 68.701 kb on - strand, within GFF79at 68.701 kb on - strand, within GFF79at 68.701 kb on - strand, within GFF79at 68.717 kb on - strand, within GFF79at 68.721 kb on + strand, within GFF79at 68.721 kb on + strand, within GFF79at 68.746 kb on + strand, within GFF79at 68.798 kb on + strand, within GFF79at 68.829 kb on - strand, within GFF79at 68.829 kb on - strand, within GFF79at 68.851 kb on + strand, within GFF79at 68.859 kb on - strand, within GFF79at 68.879 kb on + strand, within GFF79at 68.892 kb on - strand, within GFF79at 68.892 kb on - strand, within GFF79at 68.904 kb on + strand, within GFF79at 68.906 kb on + strand, within GFF79at 68.912 kb on - strand, within GFF79at 68.912 kb on - strand, within GFF79at 68.914 kb on - strand, within GFF79at 68.919 kb on + strand, within GFF79at 68.927 kb on + strand, within GFF79at 68.940 kb on - strand, within GFF79at 68.951 kb on + strand, within GFF79at 68.951 kb on + strand, within GFF79at 68.951 kb on + strand, within GFF79at 68.955 kb on + strand, within GFF79at 68.955 kb on + strand, within GFF79at 68.955 kb on + strand, within GFF79at 68.959 kb on - strand, within GFF79at 68.963 kb on - strand, within GFF79at 68.972 kb on + strand, within GFF79at 68.980 kb on - strand, within GFF79at 68.980 kb on - strand, within GFF79at 69.021 kb on + strand, within GFF79at 69.021 kb on + strand, within GFF79at 69.035 kb on - strand, within GFF79at 69.046 kb on - strand, within GFF79at 69.090 kb on - strand, within GFF79at 69.111 kb on - strand, within GFF79at 69.129 kb on + strand, within GFF79at 69.129 kb on + strand, within GFF79at 69.138 kb on + strand, within GFF79at 69.254 kb on + strand, within GFF79at 69.262 kb on - strand, within GFF79at 69.262 kb on - strand, within GFF79at 69.262 kb on - strand, within GFF79at 69.297 kb on - strand, within GFF79at 69.317 kb on + strand, within GFF79at 69.354 kb on + strand, within GFF79at 69.426 kb on + strand, within GFF79at 69.434 kb on + strand, within GFF79at 69.442 kb on - strand, within GFF79

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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66,758 - GFF77 0.22 -2.0
66,763 + GFF77 0.23 -0.4
66,783 + GFF77 0.24 -1.1
66,783 + GFF77 0.24 -2.3
66,783 + GFF77 0.24 -0.3
66,791 - GFF77 0.25 -2.6
66,791 - GFF77 0.25 -1.5
66,794 + GFF77 0.25 -0.7
66,811 + GFF77 0.27 +0.1
66,811 + GFF77 0.27 -1.0
66,811 + GFF77 0.27 -0.3
66,811 + GFF77 0.27 -1.6
66,811 + GFF77 0.27 -2.0
66,811 + GFF77 0.27 +0.3
66,811 + GFF77 0.27 -0.5
66,811 + GFF77 0.27 +0.6
66,811 + GFF77 0.27 -0.2
66,811 + GFF77 0.27 +0.1
66,819 - GFF77 0.27 +0.1
66,819 - GFF77 0.27 -0.7
66,819 - GFF77 0.27 -0.3
66,830 - GFF77 0.28 -1.0
66,858 - GFF77 0.30 +0.3
66,858 - GFF77 0.30 +0.8
66,901 + GFF77 0.34 -2.1
66,904 - GFF77 0.34 -0.2
66,949 + GFF77 0.38 -0.5
67,009 + GFF77 0.42 -0.4
67,009 + GFF77 0.42 -0.4
67,014 + GFF77 0.43 +1.1
67,052 - GFF77 0.46 +0.3
67,054 + GFF77 0.46 -1.1
67,070 + GFF77 0.47 -2.1
67,080 + GFF77 0.48 -0.4
67,080 + GFF77 0.48 -0.9
67,088 - GFF77 0.48 -0.5
67,116 - GFF77 0.51 -1.1
67,131 - GFF77 0.52 -1.7
67,142 + GFF77 0.53 -0.5
67,151 + GFF77 0.53 -1.2
67,151 + GFF77 0.53 +0.4
67,186 + GFF77 0.56 +0.2
67,187 - GFF77 0.56 -0.2
67,191 + GFF77 0.57 +0.7
67,191 + GFF77 0.57 -1.3
67,191 - GFF77 0.57 -0.5
67,222 + GFF77 0.59 -1.4
67,243 - GFF77 0.61 -1.5
67,246 - GFF77 0.61 -2.5
67,248 - GFF77 0.61 -0.3
67,248 - GFF77 0.61 -0.3
67,248 - GFF77 0.61 -2.0
67,271 + GFF77 0.63 +0.6
67,303 + GFF77 0.65 -0.8
67,311 - GFF77 0.66 -1.2
67,314 - GFF77 0.66 +0.3
67,338 + GFF77 0.68 +1.2
67,338 + GFF77 0.68 -1.0
67,338 + GFF77 0.68 -0.0
67,385 + GFF77 0.72 -0.2
67,458 - GFF77 0.78 -1.1
67,459 - GFF77 0.78 -0.2
67,472 + GFF77 0.79 +0.0
67,518 + GFF77 0.82 -1.3
67,518 + GFF77 0.82 +0.1
67,518 + GFF77 0.82 +0.5
67,522 - GFF77 0.83 -0.4
67,527 + GFF77 0.83 -0.3
67,586 - GFF77 0.88 -0.5
67,647 + -1.3
67,666 + -0.6
67,690 + -0.6
67,698 - -0.6
67,719 + -0.7
67,721 - -0.1
67,721 - -1.4
67,731 - -1.5
67,744 - +0.3
67,755 + -1.1
67,755 + -0.3
67,755 + +0.3
67,755 + -0.1
67,755 + -3.1
67,772 + -0.6
67,811 + GFF78 0.10 -0.5
67,820 + GFF78 0.11 +0.4
67,820 - GFF78 0.11 -1.5
67,821 + GFF78 0.12 +0.3
67,829 - GFF78 0.13 +0.4
67,830 - GFF78 0.13 -0.5
67,853 + GFF78 0.16 +0.2
67,853 + GFF78 0.16 -0.9
67,874 - GFF78 0.19 -0.7
67,880 + GFF78 0.20 -0.6
67,895 - GFF78 0.22 +1.6
67,921 - GFF78 0.26 +0.5
67,929 - GFF78 0.27 -1.0
67,964 + GFF78 0.32 +0.9
67,974 + GFF78 0.33 -0.9
67,974 + GFF78 0.33 -1.2
68,001 + GFF78 0.37 +0.9
68,001 + GFF78 0.37 -0.1
68,001 + GFF78 0.37 -0.2
68,001 + GFF78 0.37 +0.3
68,009 - GFF78 0.38 +0.1
68,009 - GFF78 0.38 -0.9
68,015 + GFF78 0.39 -1.2
68,048 - GFF78 0.43 -0.8
68,064 + GFF78 0.45 +0.9
68,064 + GFF78 0.45 -0.1
68,082 + GFF78 0.48 +0.0
68,084 + GFF78 0.48 +0.1
68,119 + GFF78 0.53 -0.1
68,127 - GFF78 0.54 +0.2
68,188 + GFF78 0.63 -0.5
68,192 - GFF78 0.63 -1.7
68,199 - GFF78 0.64 -0.8
68,218 + GFF78 0.67 -0.6
68,221 - GFF78 0.67 +1.0
68,223 + GFF78 0.68 +0.5
68,240 - GFF78 0.70 -1.1
68,246 + GFF78 0.71 -0.9
68,265 + GFF78 0.74 -0.2
68,273 - GFF78 0.75 +1.1
68,292 + GFF78 0.77 -0.0
68,295 - GFF78 0.78 -0.1
68,310 - GFF78 0.80 +0.3
68,310 - GFF78 0.80 -0.4
68,313 + GFF78 0.80 +0.6
68,313 + GFF78 0.80 -0.3
68,313 + GFF78 0.80 -1.1
68,321 - GFF78 0.81 -0.2
68,324 + GFF78 0.82 -0.4
68,339 + GFF78 0.84 +0.1
68,339 + GFF78 0.84 -1.0
68,343 + GFF78 0.84 +1.7
68,351 - GFF78 0.85 -1.2
68,351 - GFF78 0.85 +0.4
68,352 - GFF78 0.86 +0.4
68,360 + GFF78 0.87 -0.2
68,361 - GFF78 0.87 +0.5
68,373 - GFF78 0.89 +0.3
68,380 - GFF78 0.90 -0.4
68,398 - -1.5
68,444 + +0.7
68,444 + +0.9
68,450 + -0.7
68,452 - +0.6
68,452 - +0.1
68,452 - -0.2
68,462 + -0.3
68,462 + +0.1
68,483 + -0.4
68,512 + +0.7
68,515 - +0.1
68,515 - +0.7
68,515 - +1.6
68,515 - +1.4
68,517 + -0.5
68,525 - +0.7
68,525 - -1.5
68,531 + -0.3
68,531 + +0.1
68,539 - -0.2
68,544 - +0.1
68,557 - -1.1
68,561 + -0.2
68,597 + -0.2
68,605 - +0.2
68,605 - +0.4
68,605 - -0.2
68,605 - -0.1
68,605 - +0.4
68,605 - -0.3
68,605 - -0.6
68,689 - -2.1
68,693 + -2.7
68,693 + -1.8
68,693 + -1.4
68,701 - GFF79 0.10 -2.0
68,701 - GFF79 0.10 +0.3
68,701 - GFF79 0.10 -1.2
68,701 - GFF79 0.10 -1.8
68,717 - GFF79 0.11 -0.5
68,721 + GFF79 0.11 -1.8
68,721 + GFF79 0.11 -3.2
68,746 + GFF79 0.13 -1.7
68,798 + GFF79 0.17 -0.3
68,829 - GFF79 0.19 -2.4
68,829 - GFF79 0.19 -1.8
68,851 + GFF79 0.20 -2.2
68,859 - GFF79 0.21 -2.4
68,879 + GFF79 0.22 -1.4
68,892 - GFF79 0.23 -2.4
68,892 - GFF79 0.23 -1.5
68,904 + GFF79 0.24 -2.9
68,906 + GFF79 0.24 -1.9
68,912 - GFF79 0.24 -3.0
68,912 - GFF79 0.24 -1.6
68,914 - GFF79 0.25 -2.1
68,919 + GFF79 0.25 -1.8
68,927 + GFF79 0.25 -1.6
68,940 - GFF79 0.26 -2.7
68,951 + GFF79 0.27 -1.9
68,951 + GFF79 0.27 -2.2
68,951 + GFF79 0.27 -2.2
68,955 + GFF79 0.27 -1.6
68,955 + GFF79 0.27 -2.6
68,955 + GFF79 0.27 -1.3
68,959 - GFF79 0.28 -2.3
68,963 - GFF79 0.28 -2.2
68,972 + GFF79 0.28 -2.1
68,980 - GFF79 0.29 -2.1
68,980 - GFF79 0.29 -2.8
69,021 + GFF79 0.32 -2.5
69,021 + GFF79 0.32 -2.1
69,035 - GFF79 0.33 -1.3
69,046 - GFF79 0.33 -2.4
69,090 - GFF79 0.36 -2.4
69,111 - GFF79 0.38 -3.8
69,129 + GFF79 0.39 -3.0
69,129 + GFF79 0.39 -1.6
69,138 + GFF79 0.40 -1.8
69,254 + GFF79 0.48 -2.2
69,262 - GFF79 0.48 -2.1
69,262 - GFF79 0.48 -2.0
69,262 - GFF79 0.48 -1.6
69,297 - GFF79 0.50 -2.3
69,317 + GFF79 0.52 -2.2
69,354 + GFF79 0.54 -3.0
69,426 + GFF79 0.59 -1.5
69,434 + GFF79 0.60 -2.0
69,442 - GFF79 0.60 -2.7

Or see this region's nucleotide sequence