Strain Fitness in Sphingobium sp. HT1-2 around GFF69

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
57,633	+		GFF67	0.78	+0.9
57,638	+		GFF67	0.78	-0.0
57,638	+		GFF67	0.78	-1.3
57,641	-		GFF67	0.78	-0.2
57,643	+		GFF67	0.78	+1.1
57,672	+		GFF67	0.80	-0.5
57,682	+		GFF67	0.81	-0.2
57,713	+		GFF67	0.83	-2.0
57,718	+		GFF67	0.83	+0.8
57,718	+		GFF67	0.83	+0.7
57,718	+		GFF67	0.83	-0.6
57,721	-		GFF67	0.83	+0.7
57,726	-		GFF67	0.83	+0.4
57,726	-		GFF67	0.83	+1.4
57,726	-		GFF67	0.83	-1.2
57,726	-		GFF67	0.83	-0.4
57,731	-		GFF67	0.84	+0.9
57,753	+		GFF67	0.85	-1.1
57,753	+		GFF67	0.85	-0.9
57,754	+		GFF67	0.85	+1.6
57,754	+		GFF67	0.85	-1.8
57,761	-		GFF67	0.85	+0.8
57,761	-		GFF67	0.85	+0.4
57,761	-		GFF67	0.85	-1.0
57,762	-		GFF67	0.86	+0.5
57,778	+		GFF67	0.86	+0.6
57,778	+		GFF67	0.86	-1.6
57,789	-		GFF67	0.87	-0.6
57,804	+		GFF67	0.88	+0.8
57,809	+		GFF67	0.88	-0.1
57,812	+		GFF67	0.89	-0.3
57,812	+		GFF67	0.89	-1.4
57,839	+				+0.6
57,841	-				-0.2
57,845	+				-1.8
57,847	-				+0.4
57,847	-				+0.6
57,853	-				-0.1
57,866	+				-0.6
57,874	-				-1.6
57,874	-				-0.7
57,875	+				-3.1
57,890	-				+1.1
57,907	+				-2.1
57,910	-				+0.6
58,029	+				-0.7
58,029	+				+0.3
58,029	+				-0.5
58,029	+				-0.7
58,037	-				+0.5
58,037	-				-0.7
58,037	-				+0.7
58,037	-				-0.2
58,037	-				+0.5
58,085	+		GFF68	0.20	+0.2
58,085	+		GFF68	0.20	-0.2
58,092	+		GFF68	0.21	-1.2
58,093	-		GFF68	0.22	+0.4
58,093	-		GFF68	0.22	-0.7
58,093	-		GFF68	0.22	-1.6
58,093	-		GFF68	0.22	+1.8
58,093	-		GFF68	0.22	+0.3
58,093	-		GFF68	0.22	+1.8
58,097	+		GFF68	0.23	-2.3
58,100	-		GFF68	0.23	-2.2
58,103	+		GFF68	0.24	-1.9
58,103	+		GFF68	0.24	+0.7
58,105	-		GFF68	0.24	+0.4
58,145	+		GFF68	0.33	-0.5
58,158	-		GFF68	0.36	-0.9
58,173	-		GFF68	0.40	-0.4
58,173	-		GFF68	0.40	-0.2
58,176	-		GFF68	0.40	-2.4
58,228	-		GFF68	0.52	-0.1
58,238	-		GFF68	0.54	-1.4
58,238	-		GFF68	0.54	-1.4
58,279	-		GFF68	0.63	-0.8
58,282	+		GFF68	0.64	+0.5
58,290	+		GFF68	0.66	-0.1
58,305	-		GFF68	0.69	+0.3
58,305	-		GFF68	0.69	-1.1
58,329	+		GFF68	0.74	-0.6
58,334	+		GFF68	0.76	+0.4
58,335	-		GFF68	0.76	+0.5
58,335	-		GFF68	0.76	-1.2
58,340	+		GFF68	0.77	-0.9
58,348	-		GFF68	0.79	+0.9
58,383	+		GFF68	0.87	+1.1
58,384	+		GFF68	0.87	-0.1
58,389	+		GFF68	0.88	-0.2
58,390	+		GFF68	0.88	+0.3
58,390	+		GFF68	0.88	-0.4
58,390	+		GFF68	0.88	-0.8
58,424	+				-0.7
58,426	-				+0.2
58,427	+				+0.1
58,427	+				-0.8
58,435	-				-0.2
58,440	-				-1.0
58,442	+				+0.2
58,524	-				+0.1
58,559	+				+0.2
58,559	+				-0.5
58,624	-				-0.4
58,624	-				+0.3
58,652	+				+0.0
58,652	+				-0.4
58,652	+				+0.4
58,652	+				-1.1
58,652	+				-0.5
58,652	+				-0.4
58,652	+				-0.1
58,652	+				-0.6
58,652	+				-2.8
58,652	+				+1.1
58,652	+				-0.1
58,652	+				-0.4
58,652	+				+0.9
58,652	+				-2.4
58,653	-				-1.3
58,657	+				+0.7
58,660	-				+2.1
58,660	-				-2.8
58,660	-				-1.5
58,660	-				-2.1
58,660	-				+0.9
58,660	-				+0.3
58,660	-				+1.5
58,660	-				-0.6
58,660	-				+0.8
58,660	-				-0.3
58,660	-				-0.6
58,660	-				+0.8
58,660	-				-1.4
58,660	-				+0.6
58,660	-				+1.6
58,660	-				+0.3
58,660	-				-0.5
58,660	-				-2.1
58,660	-				-0.2
58,660	-				-1.9
58,662	+				+0.9
58,665	-				-1.4
58,665	-				-1.4
58,670	-				-0.2
58,670	-				-1.1
58,670	-				+0.1
58,670	-				+0.2
58,684	-				+0.6
58,696	-				-0.1
58,735	-		GFF69	0.14	+0.9
58,738	+		GFF69	0.14	-0.1
58,754	-		GFF69	0.16	-2.3
58,758	-		GFF69	0.16	+0.6
58,758	-		GFF69	0.16	+1.5
58,769	+		GFF69	0.18	-0.8
58,777	+		GFF69	0.18	+0.5
58,785	-		GFF69	0.19	+0.2
58,801	+		GFF69	0.21	-0.8
58,826	+		GFF69	0.24	+1.3
58,826	+		GFF69	0.24	-1.7
58,838	+		GFF69	0.25	+0.2
58,847	+		GFF69	0.26	-1.1
58,852	+		GFF69	0.27	-0.4
58,857	+		GFF69	0.27	-3.1
58,857	+		GFF69	0.27	-1.3
58,862	+		GFF69	0.28	+0.8
58,862	+		GFF69	0.28	+0.5
58,870	-		GFF69	0.29	-0.3
58,891	-		GFF69	0.31	-0.7
58,891	-		GFF69	0.31	-1.2
58,927	-		GFF69	0.35	+1.4
58,929	+		GFF69	0.35	-0.2
58,933	+		GFF69	0.36	-0.4
58,937	-		GFF69	0.36	-0.5
58,940	-		GFF69	0.36	+0.6
58,973	-		GFF69	0.40	+0.0
59,010	-		GFF69	0.44	+0.4
59,037	+		GFF69	0.47	-0.1
59,045	-		GFF69	0.48	-0.4
59,064	-		GFF69	0.50	-1.1
59,157	+		GFF69	0.60	-1.2
59,173	-		GFF69	0.62	-0.4
59,173	-		GFF69	0.62	+0.4
59,173	-		GFF69	0.62	-0.1
59,173	-		GFF69	0.62	-0.9
59,197	-		GFF69	0.65	-0.1
59,204	-		GFF69	0.65	-0.9
59,227	-		GFF69	0.68	-0.3
59,231	+		GFF69	0.68	+0.7
59,231	+		GFF69	0.68	-0.5
59,231	+		GFF69	0.68	-2.4
59,231	+		GFF69	0.68	+0.1
59,237	-		GFF69	0.69	+1.0
59,239	-		GFF69	0.69	-0.0
59,239	-		GFF69	0.69	-0.1
59,239	-		GFF69	0.69	-0.9
59,239	-		GFF69	0.69	-0.9
59,239	-		GFF69	0.69	-0.3
59,239	-		GFF69	0.69	+0.7
59,249	+		GFF69	0.70	+0.1
59,254	+		GFF69	0.71	-0.1
59,254	+		GFF69	0.71	-1.5
59,254	+		GFF69	0.71	+0.9
59,257	-		GFF69	0.71	-1.2
59,262	-		GFF69	0.72	-1.4
59,262	-		GFF69	0.72	-0.2
59,262	-		GFF69	0.72	+0.1
59,262	-		GFF69	0.72	+0.2
59,286	+		GFF69	0.74	-0.2
59,286	+		GFF69	0.74	+0.5
59,289	-		GFF69	0.75	-0.3
59,296	-		GFF69	0.76	+0.1
59,308	-		GFF69	0.77	+1.3
59,318	-		GFF69	0.78	-1.2
59,349	+		GFF69	0.81	-0.7
59,357	-		GFF69	0.82	+0.7
59,366	+		GFF69	0.83	-0.2
59,366	+		GFF69	0.83	-1.8
59,366	+		GFF69	0.83	-0.1
59,374	-		GFF69	0.84	-1.5
59,374	-		GFF69	0.84	-0.3
59,374	-		GFF69	0.84	-0.9
59,377	+		GFF69	0.84	-1.7
59,377	+		GFF69	0.84	-0.0
59,377	+		GFF69	0.84	+0.4
59,377	+		GFF69	0.84	-0.2
59,384	-		GFF69	0.85	+0.7
59,385	-		GFF69	0.85	-0.1
59,394	-		GFF69	0.86	-0.7
59,400	-		GFF69	0.87	+1.4
59,425	-		GFF69	0.90	-0.3
59,427	-				-1.3
59,475	+				-0.1
59,478	-				+0.4
59,499	+				+0.0
59,500	-				-0.3
59,517	+				-1.9
59,517	+				+0.6
59,518	+				-1.5
59,518	+				-0.3
59,526	-				+1.6
59,526	-				+0.5
59,526	-				-2.2
59,526	-				+1.3
59,550	+				-0.3
59,554	-				+1.3
59,556	-				-0.2
59,640	+				-2.9
59,648	-				-0.6
59,648	-				+0.8
59,693	+		GFF70	0.23	+0.3
59,700	+		GFF70	0.27	+0.8
59,711	+		GFF70	0.32	+0.5
59,719	-		GFF70	0.35	-0.7
59,728	+		GFF70	0.39	-1.1
59,736	-		GFF70	0.43	+0.2
59,754	+		GFF70	0.51	-1.2
59,759	+		GFF70	0.53	-2.0
59,767	-		GFF70	0.57	+0.3
59,786	-		GFF70	0.65	-0.1
59,824	-		GFF70	0.82	-0.4
59,824	-		GFF70	0.82	-0.2
59,824	-		GFF70	0.82	+0.2
59,846	+				-1.4
59,859	+				-0.6
59,867	-				+0.4
59,877	-				+0.1
59,897	+				-0.2
59,905	-				-0.2
59,905	-				-2.0
59,933	+				-0.2
59,941	-				-0.2
59,981	-				+1.3
59,982	+				+0.6
59,990	-				-0.0
60,004	+				-0.4
60,020	-		GFF71	0.10	+1.3
60,031	+		GFF71	0.11	+1.0
60,042	+		GFF71	0.12	+1.4
60,068	+		GFF71	0.14	-0.4
60,101	+		GFF71	0.17	-0.7
60,101	+		GFF71	0.17	-0.2
60,104	-		GFF71	0.17	+0.8
60,120	+		GFF71	0.18	-0.9
60,176	-		GFF71	0.23	+0.4
60,194	+		GFF71	0.24	+0.2
60,194	+		GFF71	0.24	-0.8
60,194	+		GFF71	0.24	-2.4
60,194	+		GFF71	0.24	+0.6
60,194	+		GFF71	0.24	-1.0
60,194	+		GFF71	0.24	-0.3
60,199	+		GFF71	0.24	-0.7
60,199	+		GFF71	0.24	-0.3
60,199	+		GFF71	0.24	-0.4
60,202	-		GFF71	0.25	-0.3
60,202	-		GFF71	0.25	+0.4
60,202	-		GFF71	0.25	-1.7
60,202	-		GFF71	0.25	+0.7
60,202	-		GFF71	0.25	+0.1
60,202	-		GFF71	0.25	+0.4
60,202	-		GFF71	0.25	-0.2
60,208	+		GFF71	0.25	+0.8
60,208	-		GFF71	0.25	-1.1
60,209	+		GFF71	0.25	-1.9
60,212	-		GFF71	0.25	+0.4
60,223	+		GFF71	0.26	-0.9
60,238	+		GFF71	0.27	+0.1
60,238	+		GFF71	0.27	-1.3
60,242	+		GFF71	0.28	-0.4
60,243	+		GFF71	0.28	-2.9
60,246	-		GFF71	0.28	-1.5
60,248	+		GFF71	0.28	+1.8
60,251	-		GFF71	0.28	-0.4
60,317	+		GFF71	0.34	+0.2
60,317	+		GFF71	0.34	-1.3
60,355	+		GFF71	0.37	+0.4
60,363	-		GFF71	0.37	+1.0
60,365	-		GFF71	0.38	+1.0
60,365	-		GFF71	0.38	-1.1
60,387	+		GFF71	0.39	+1.3
60,390	-		GFF71	0.40	-0.3
60,392	+		GFF71	0.40	-0.2
60,400	+		GFF71	0.40	+0.3
60,408	-		GFF71	0.41	+0.8
60,408	-		GFF71	0.41	+0.4
60,410	+		GFF71	0.41	-1.4
60,417	+		GFF71	0.42	-1.7
60,417	+		GFF71	0.42	-0.2
60,425	-		GFF71	0.42	-1.2
60,442	-		GFF71	0.44	+2.3
60,459	+		GFF71	0.45	+0.4
60,469	-		GFF71	0.46	+0.7
60,513	+		GFF71	0.49	-0.1