Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF67 and GFF68 overlap by 4 nucleotides GFF68 and GFF69 are separated by 166 nucleotides
GFF67 - hypothetical protein, at 56,356 to 57,999
GFF67
GFF68 - hypothetical protein, at 57,996 to 58,442
GFF68
GFF69 - putative PAS/PAC sensor protein, at 58,609 to 59,517
GFF69
Position (kb) 57
58
59 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 57.019 kb on + strand, within GFF67 at 57.019 kb on + strand, within GFF67 at 57.019 kb on + strand, within GFF67 at 57.019 kb on + strand, within GFF67 at 57.019 kb on + strand, within GFF67 at 57.027 kb on - strand, within GFF67 at 57.027 kb on - strand, within GFF67 at 57.027 kb on - strand, within GFF67 at 57.027 kb on - strand, within GFF67 at 57.027 kb on - strand, within GFF67 at 57.027 kb on - strand, within GFF67 at 57.027 kb on - strand, within GFF67 at 57.029 kb on + strand, within GFF67 at 57.029 kb on + strand, within GFF67 at 57.029 kb on + strand, within GFF67 at 57.029 kb on + strand, within GFF67 at 57.029 kb on + strand, within GFF67 at 57.029 kb on + strand, within GFF67 at 57.029 kb on + strand, within GFF67 at 57.029 kb on + strand, within GFF67 at 57.029 kb on + strand, within GFF67 at 57.029 kb on + strand, within GFF67 at 57.029 kb on + strand, within GFF67 at 57.029 kb on + strand, within GFF67 at 57.034 kb on + strand, within GFF67 at 57.034 kb on + strand, within GFF67 at 57.037 kb on - strand, within GFF67 at 57.037 kb on - strand, within GFF67 at 57.037 kb on - strand, within GFF67 at 57.037 kb on - strand, within GFF67 at 57.037 kb on - strand, within GFF67 at 57.039 kb on + strand, within GFF67 at 57.039 kb on + strand, within GFF67 at 57.039 kb on + strand, within GFF67 at 57.042 kb on - strand, within GFF67 at 57.044 kb on + strand, within GFF67 at 57.068 kb on + strand, within GFF67 at 57.073 kb on + strand, within GFF67 at 57.073 kb on + strand, within GFF67 at 57.073 kb on + strand, within GFF67 at 57.073 kb on + strand, within GFF67 at 57.078 kb on + strand, within GFF67 at 57.081 kb on - strand, within GFF67 at 57.081 kb on - strand, within GFF67 at 57.101 kb on - strand, within GFF67 at 57.130 kb on + strand, within GFF67 at 57.130 kb on + strand, within GFF67 at 57.130 kb on + strand, within GFF67 at 57.130 kb on + strand, within GFF67 at 57.138 kb on - strand, within GFF67 at 57.138 kb on - strand, within GFF67 at 57.138 kb on - strand, within GFF67 at 57.158 kb on + strand, within GFF67 at 57.158 kb on + strand, within GFF67 at 57.175 kb on + strand, within GFF67 at 57.178 kb on - strand, within GFF67 at 57.183 kb on - strand, within GFF67 at 57.197 kb on + strand, within GFF67 at 57.269 kb on + strand, within GFF67 at 57.274 kb on + strand, within GFF67 at 57.295 kb on + strand, within GFF67 at 57.315 kb on - strand, within GFF67 at 57.386 kb on + strand, within GFF67 at 57.394 kb on - strand, within GFF67 at 57.394 kb on - strand, within GFF67 at 57.394 kb on - strand, within GFF67 at 57.394 kb on - strand, within GFF67 at 57.399 kb on - strand, within GFF67 at 57.433 kb on - strand, within GFF67 at 57.441 kb on + strand, within GFF67 at 57.449 kb on - strand, within GFF67 at 57.449 kb on - strand, within GFF67 at 57.449 kb on - strand, within GFF67 at 57.449 kb on - strand, within GFF67 at 57.449 kb on - strand, within GFF67 at 57.449 kb on - strand, within GFF67 at 57.451 kb on + strand, within GFF67 at 57.459 kb on + strand, within GFF67 at 57.465 kb on + strand, within GFF67 at 57.484 kb on - strand, within GFF67 at 57.484 kb on - strand, within GFF67 at 57.484 kb on - strand, within GFF67 at 57.484 kb on - strand, within GFF67 at 57.489 kb on - strand, within GFF67 at 57.494 kb on - strand, within GFF67 at 57.494 kb on - strand, within GFF67 at 57.500 kb on + strand, within GFF67 at 57.501 kb on - strand, within GFF67 at 57.502 kb on + strand, within GFF67 at 57.525 kb on + strand, within GFF67 at 57.531 kb on + strand, within GFF67 at 57.539 kb on - strand, within GFF67 at 57.544 kb on + strand, within GFF67 at 57.577 kb on + strand, within GFF67 at 57.591 kb on + strand, within GFF67 at 57.591 kb on - strand, within GFF67 at 57.599 kb on - strand, within GFF67 at 57.599 kb on - strand, within GFF67 at 57.633 kb on + strand, within GFF67 at 57.638 kb on + strand, within GFF67 at 57.641 kb on - strand, within GFF67 at 57.643 kb on + strand, within GFF67 at 57.682 kb on + strand, within GFF67 at 57.713 kb on + strand, within GFF67 at 57.718 kb on + strand, within GFF67 at 57.718 kb on + strand, within GFF67 at 57.718 kb on + strand, within GFF67 at 57.731 kb on - strand, within GFF67 at 57.753 kb on + strand, within GFF67 at 57.753 kb on + strand, within GFF67 at 57.754 kb on + strand, within GFF67 at 57.761 kb on - strand, within GFF67 at 57.778 kb on + strand, within GFF67 at 57.822 kb on - strand, within GFF67 at 57.847 kb on - strand at 57.933 kb on + strand at 58.029 kb on + strand at 58.029 kb on + strand at 58.037 kb on - strand at 58.037 kb on - strand at 58.037 kb on - strand at 58.085 kb on + strand, within GFF68 at 58.093 kb on - strand, within GFF68 at 58.093 kb on - strand, within GFF68 at 58.093 kb on - strand, within GFF68 at 58.103 kb on + strand, within GFF68 at 58.103 kb on + strand, within GFF68 at 58.105 kb on - strand, within GFF68 at 58.145 kb on + strand, within GFF68 at 58.158 kb on - strand, within GFF68 at 58.228 kb on - strand, within GFF68 at 58.282 kb on + strand, within GFF68 at 58.290 kb on + strand, within GFF68 at 58.305 kb on - strand, within GFF68 at 58.329 kb on + strand, within GFF68 at 58.335 kb on - strand, within GFF68 at 58.335 kb on - strand, within GFF68 at 58.348 kb on - strand, within GFF68 at 58.383 kb on + strand, within GFF68 at 58.384 kb on + strand, within GFF68 at 58.390 kb on + strand, within GFF68 at 58.426 kb on - strand at 58.427 kb on + strand at 58.427 kb on + strand at 58.435 kb on - strand at 58.442 kb on + strand at 58.524 kb on - strand at 58.559 kb on + strand at 58.559 kb on + strand at 58.652 kb on + strand at 58.652 kb on + strand at 58.652 kb on + strand at 58.652 kb on + strand at 58.652 kb on + strand at 58.652 kb on + strand at 58.652 kb on + strand at 58.652 kb on + strand at 58.652 kb on + strand at 58.652 kb on + strand at 58.652 kb on + strand at 58.660 kb on - strand at 58.660 kb on - strand at 58.660 kb on - strand at 58.660 kb on - strand at 58.660 kb on - strand at 58.660 kb on - strand at 58.665 kb on - strand at 58.665 kb on - strand at 58.735 kb on - strand, within GFF69 at 58.754 kb on - strand, within GFF69 at 58.769 kb on + strand, within GFF69 at 58.777 kb on + strand, within GFF69 at 58.785 kb on - strand, within GFF69 at 58.826 kb on + strand, within GFF69 at 58.838 kb on + strand, within GFF69 at 58.847 kb on + strand, within GFF69 at 58.852 kb on + strand, within GFF69 at 58.857 kb on + strand, within GFF69 at 58.857 kb on + strand, within GFF69 at 58.862 kb on + strand, within GFF69 at 58.881 kb on + strand, within GFF69 at 58.891 kb on - strand, within GFF69 at 58.929 kb on + strand, within GFF69 at 58.973 kb on - strand, within GFF69 at 59.037 kb on + strand, within GFF69 at 59.045 kb on - strand, within GFF69 at 59.064 kb on - strand, within GFF69 at 59.173 kb on - strand, within GFF69 at 59.197 kb on - strand, within GFF69 at 59.231 kb on + strand, within GFF69 at 59.231 kb on + strand, within GFF69 at 59.231 kb on + strand, within GFF69 at 59.239 kb on - strand, within GFF69 at 59.239 kb on - strand, within GFF69 at 59.239 kb on - strand, within GFF69 at 59.239 kb on - strand, within GFF69 at 59.239 kb on - strand, within GFF69 at 59.239 kb on - strand, within GFF69 at 59.239 kb on - strand, within GFF69 at 59.249 kb on + strand, within GFF69 at 59.254 kb on + strand, within GFF69 at 59.254 kb on + strand, within GFF69 at 59.254 kb on + strand, within GFF69 at 59.262 kb on - strand, within GFF69 at 59.289 kb on - strand, within GFF69 at 59.296 kb on - strand, within GFF69 at 59.308 kb on - strand, within GFF69 at 59.349 kb on + strand, within GFF69 at 59.357 kb on - strand, within GFF69 at 59.366 kb on + strand, within GFF69 at 59.366 kb on + strand, within GFF69 at 59.366 kb on + strand, within GFF69 at 59.374 kb on - strand, within GFF69 at 59.374 kb on - strand, within GFF69 at 59.374 kb on - strand, within GFF69 at 59.375 kb on - strand, within GFF69 at 59.377 kb on + strand, within GFF69 at 59.377 kb on + strand, within GFF69 at 59.377 kb on + strand, within GFF69 at 59.377 kb on + strand, within GFF69 at 59.384 kb on - strand, within GFF69 at 59.385 kb on - strand, within GFF69 at 59.394 kb on - strand, within GFF69 at 59.400 kb on - strand, within GFF69 at 59.427 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 57,019 + GFF67 0.40 +0.1 57,019 + GFF67 0.40 -1.1 57,019 + GFF67 0.40 +0.5 57,019 + GFF67 0.40 +0.1 57,019 + GFF67 0.40 -0.8 57,027 - GFF67 0.41 +1.2 57,027 - GFF67 0.41 -0.4 57,027 - GFF67 0.41 +0.1 57,027 - GFF67 0.41 -0.0 57,027 - GFF67 0.41 -1.2 57,027 - GFF67 0.41 +1.2 57,027 - GFF67 0.41 -0.5 57,029 + GFF67 0.41 +0.5 57,029 + GFF67 0.41 +0.4 57,029 + GFF67 0.41 -1.1 57,029 + GFF67 0.41 -1.7 57,029 + GFF67 0.41 -1.2 57,029 + GFF67 0.41 +1.2 57,029 + GFF67 0.41 +0.1 57,029 + GFF67 0.41 +0.6 57,029 + GFF67 0.41 -0.3 57,029 + GFF67 0.41 +0.0 57,029 + GFF67 0.41 -0.0 57,029 + GFF67 0.41 -0.8 57,034 + GFF67 0.41 -0.1 57,034 + GFF67 0.41 +1.2 57,037 - GFF67 0.41 -1.7 57,037 - GFF67 0.41 -0.6 57,037 - GFF67 0.41 -1.1 57,037 - GFF67 0.41 -0.6 57,037 - GFF67 0.41 -0.8 57,039 + GFF67 0.42 +0.1 57,039 + GFF67 0.42 -0.8 57,039 + GFF67 0.42 -1.4 57,042 - GFF67 0.42 +0.2 57,044 + GFF67 0.42 +0.5 57,068 + GFF67 0.43 +0.4 57,073 + GFF67 0.44 +0.0 57,073 + GFF67 0.44 +1.1 57,073 + GFF67 0.44 -0.5 57,073 + GFF67 0.44 +0.2 57,078 + GFF67 0.44 -1.7 57,081 - GFF67 0.44 -0.2 57,081 - GFF67 0.44 -1.0 57,101 - GFF67 0.45 -0.4 57,130 + GFF67 0.47 -1.2 57,130 + GFF67 0.47 -0.0 57,130 + GFF67 0.47 -0.8 57,130 + GFF67 0.47 +1.1 57,138 - GFF67 0.48 +0.4 57,138 - GFF67 0.48 +0.2 57,138 - GFF67 0.48 +0.8 57,158 + GFF67 0.49 -2.6 57,158 + GFF67 0.49 -0.3 57,175 + GFF67 0.50 -0.3 57,178 - GFF67 0.50 -0.2 57,183 - GFF67 0.50 -0.1 57,197 + GFF67 0.51 +0.1 57,269 + GFF67 0.56 +0.4 57,274 + GFF67 0.56 -0.4 57,295 + GFF67 0.57 +0.3 57,315 - GFF67 0.58 +0.5 57,386 + GFF67 0.63 -0.2 57,394 - GFF67 0.63 -0.4 57,394 - GFF67 0.63 -0.8 57,394 - GFF67 0.63 -0.2 57,394 - GFF67 0.63 -0.7 57,399 - GFF67 0.63 +0.1 57,433 - GFF67 0.66 +0.8 57,441 + GFF67 0.66 -0.0 57,449 - GFF67 0.66 -1.9 57,449 - GFF67 0.66 +0.1 57,449 - GFF67 0.66 -0.6 57,449 - GFF67 0.66 +0.1 57,449 - GFF67 0.66 -0.9 57,449 - GFF67 0.66 +0.4 57,451 + GFF67 0.67 +1.6 57,459 + GFF67 0.67 -0.5 57,465 + GFF67 0.67 +0.7 57,484 - GFF67 0.69 +0.8 57,484 - GFF67 0.69 -1.1 57,484 - GFF67 0.69 -0.3 57,484 - GFF67 0.69 +0.2 57,489 - GFF67 0.69 +0.9 57,494 - GFF67 0.69 -0.4 57,494 - GFF67 0.69 -0.6 57,500 + GFF67 0.70 +0.2 57,501 - GFF67 0.70 +0.3 57,502 + GFF67 0.70 +0.1 57,525 + GFF67 0.71 +0.8 57,531 + GFF67 0.71 +1.1 57,539 - GFF67 0.72 +1.1 57,544 + GFF67 0.72 +0.7 57,577 + GFF67 0.74 +2.0 57,591 + GFF67 0.75 +0.5 57,591 - GFF67 0.75 -1.3 57,599 - GFF67 0.76 +1.1 57,599 - GFF67 0.76 +0.4 57,633 + GFF67 0.78 +1.0 57,638 + GFF67 0.78 -1.2 57,641 - GFF67 0.78 -0.0 57,643 + GFF67 0.78 +1.2 57,682 + GFF67 0.81 -0.1 57,713 + GFF67 0.83 -1.9 57,718 + GFF67 0.83 +0.9 57,718 + GFF67 0.83 +0.9 57,718 + GFF67 0.83 -0.5 57,731 - GFF67 0.84 +1.0 57,753 + GFF67 0.85 -1.0 57,753 + GFF67 0.85 -0.8 57,754 + GFF67 0.85 +1.7 57,761 - GFF67 0.85 -0.9 57,778 + GFF67 0.86 +0.7 57,822 - GFF67 0.89 -0.6 57,847 - +0.8 57,933 + +1.4 58,029 + -0.6 58,029 + -0.4 58,037 - -0.6 58,037 - +0.8 58,037 - +0.6 58,085 + GFF68 0.20 +0.3 58,093 - GFF68 0.22 +1.2 58,093 - GFF68 0.22 -1.5 58,093 - GFF68 0.22 +0.8 58,103 + GFF68 0.24 -1.8 58,103 + GFF68 0.24 +0.8 58,105 - GFF68 0.24 +0.5 58,145 + GFF68 0.33 -0.4 58,158 - GFF68 0.36 -0.8 58,228 - GFF68 0.52 -0.0 58,282 + GFF68 0.64 +0.6 58,290 + GFF68 0.66 +0.1 58,305 - GFF68 0.69 -0.9 58,329 + GFF68 0.74 -0.5 58,335 - GFF68 0.76 +0.6 58,335 - GFF68 0.76 -1.0 58,348 - GFF68 0.79 +1.0 58,383 + GFF68 0.87 +1.3 58,384 + GFF68 0.87 +0.1 58,390 + GFF68 0.88 -0.3 58,426 - +0.3 58,427 + +0.2 58,427 + -0.7 58,435 - -0.1 58,442 + +0.3 58,524 - +0.3 58,559 + +0.3 58,559 + -0.4 58,652 + +0.2 58,652 + -0.2 58,652 + +0.6 58,652 + -1.0 58,652 + -0.4 58,652 + -0.3 58,652 + -0.0 58,652 + -2.7 58,652 + +1.2 58,652 + -0.3 58,652 + -2.3 58,660 - +0.4 58,660 - -0.5 58,660 - -0.5 58,660 - +0.7 58,660 - +1.7 58,660 - -1.9 58,665 - -1.3 58,665 - -1.3 58,735 - GFF69 0.14 +1.1 58,754 - GFF69 0.16 -2.2 58,769 + GFF69 0.18 -0.7 58,777 + GFF69 0.18 +0.6 58,785 - GFF69 0.19 +0.3 58,826 + GFF69 0.24 +1.4 58,838 + GFF69 0.25 +0.3 58,847 + GFF69 0.26 -1.0 58,852 + GFF69 0.27 -0.3 58,857 + GFF69 0.27 -2.9 58,857 + GFF69 0.27 -1.2 58,862 + GFF69 0.28 +0.6 58,881 + GFF69 0.30 +0.4 58,891 - GFF69 0.31 -0.6 58,929 + GFF69 0.35 -0.1 58,973 - GFF69 0.40 +0.1 59,037 + GFF69 0.47 +0.1 59,045 - GFF69 0.48 -0.3 59,064 - GFF69 0.50 -0.9 59,173 - GFF69 0.62 -0.8 59,197 - GFF69 0.65 +0.1 59,231 + GFF69 0.68 +0.8 59,231 + GFF69 0.68 +1.0 59,231 + GFF69 0.68 -0.4 59,239 - GFF69 0.69 +0.1 59,239 - GFF69 0.69 -0.0 59,239 - GFF69 0.69 -0.8 59,239 - GFF69 0.69 -0.7 59,239 - GFF69 0.69 -0.2 59,239 - GFF69 0.69 +0.9 59,239 - GFF69 0.69 -0.8 59,249 + GFF69 0.70 +0.3 59,254 + GFF69 0.71 +0.1 59,254 + GFF69 0.71 -1.4 59,254 + GFF69 0.71 +1.0 59,262 - GFF69 0.72 +0.3 59,289 - GFF69 0.75 -0.2 59,296 - GFF69 0.76 +0.2 59,308 - GFF69 0.77 +1.4 59,349 + GFF69 0.81 -0.6 59,357 - GFF69 0.82 +0.8 59,366 + GFF69 0.83 -0.9 59,366 + GFF69 0.83 -1.6 59,366 + GFF69 0.83 +0.0 59,374 - GFF69 0.84 -1.4 59,374 - GFF69 0.84 -0.2 59,374 - GFF69 0.84 -0.7 59,375 - GFF69 0.84 -0.9 59,377 + GFF69 0.84 -1.6 59,377 + GFF69 0.84 +1.4 59,377 + GFF69 0.84 +0.1 59,377 + GFF69 0.84 +0.5 59,384 - GFF69 0.85 +1.2 59,385 - GFF69 0.85 +0.1 59,394 - GFF69 0.86 -0.6 59,400 - GFF69 0.87 +1.5 59,427 - -1.2
Or see this region's nucleotide sequence