Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF678 and GFF679 are separated by 63 nucleotides GFF679 and GFF680 are separated by 61 nucleotides
GFF678 - Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1), at 670,187 to 671,239
GFF678
GFF679 - hypothetical protein, at 671,303 to 671,680
GFF679
GFF680 - Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1), at 671,742 to 673,640
GFF680
Position (kb) 671
672 Strain fitness (log2 ratio) -2
-1
0
1
2 at 671.250 kb on - strand at 671.250 kb on - strand at 671.295 kb on - strand at 671.314 kb on - strand at 671.315 kb on + strand at 671.316 kb on + strand at 671.323 kb on - strand at 671.330 kb on - strand at 671.330 kb on - strand at 671.330 kb on - strand at 671.355 kb on - strand, within GFF679 at 671.374 kb on + strand, within GFF679 at 671.382 kb on - strand, within GFF679 at 671.400 kb on + strand, within GFF679 at 671.403 kb on - strand, within GFF679 at 671.406 kb on - strand, within GFF679 at 671.406 kb on - strand, within GFF679 at 671.406 kb on - strand, within GFF679 at 671.406 kb on - strand, within GFF679 at 671.408 kb on - strand, within GFF679 at 671.408 kb on - strand, within GFF679 at 671.408 kb on - strand, within GFF679 at 671.413 kb on - strand, within GFF679 at 671.413 kb on - strand, within GFF679 at 671.461 kb on + strand, within GFF679 at 671.469 kb on - strand, within GFF679 at 671.533 kb on - strand, within GFF679 at 671.539 kb on - strand, within GFF679 at 671.556 kb on - strand, within GFF679 at 671.580 kb on + strand, within GFF679 at 671.580 kb on + strand, within GFF679 at 671.583 kb on - strand, within GFF679 at 671.588 kb on - strand, within GFF679 at 671.629 kb on - strand, within GFF679 at 671.629 kb on - strand, within GFF679 at 671.630 kb on - strand, within GFF679 at 671.633 kb on + strand, within GFF679 at 671.636 kb on - strand, within GFF679 at 671.643 kb on + strand at 671.677 kb on + strand at 671.682 kb on + strand at 671.683 kb on + strand at 671.683 kb on + strand at 671.685 kb on - strand at 671.689 kb on + strand at 671.690 kb on - strand at 671.690 kb on - strand at 671.691 kb on - strand at 671.715 kb on - strand at 671.715 kb on - strand at 671.726 kb on - strand at 671.733 kb on + strand at 671.741 kb on - strand at 671.741 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 671,250 - +2.0 671,250 - +1.1 671,295 - +0.1 671,314 - +0.2 671,315 + +0.8 671,316 + -0.6 671,323 - +0.7 671,330 - -1.9 671,330 - +0.1 671,330 - -0.6 671,355 - GFF679 0.14 +0.8 671,374 + GFF679 0.19 +1.2 671,382 - GFF679 0.21 -0.7 671,400 + GFF679 0.26 -0.1 671,403 - GFF679 0.26 +0.7 671,406 - GFF679 0.27 -0.4 671,406 - GFF679 0.27 +1.5 671,406 - GFF679 0.27 -0.8 671,406 - GFF679 0.27 -1.1 671,408 - GFF679 0.28 +0.3 671,408 - GFF679 0.28 +0.5 671,408 - GFF679 0.28 -0.2 671,413 - GFF679 0.29 +0.3 671,413 - GFF679 0.29 +0.1 671,461 + GFF679 0.42 -0.0 671,469 - GFF679 0.44 +0.4 671,533 - GFF679 0.61 +1.2 671,539 - GFF679 0.62 +0.5 671,556 - GFF679 0.67 -0.6 671,580 + GFF679 0.73 +0.9 671,580 + GFF679 0.73 -1.7 671,583 - GFF679 0.74 +0.8 671,588 - GFF679 0.75 -0.4 671,629 - GFF679 0.86 -1.6 671,629 - GFF679 0.86 +0.5 671,630 - GFF679 0.87 -0.1 671,633 + GFF679 0.87 +0.7 671,636 - GFF679 0.88 -2.0 671,643 + -0.7 671,677 + +1.1 671,682 + +0.4 671,683 + -0.3 671,683 + -1.4 671,685 - +0.9 671,689 + -0.3 671,690 - -0.0 671,690 - +0.8 671,691 - -0.7 671,715 - -2.0 671,715 - -0.7 671,726 - +0.0 671,733 + -0.5 671,741 - -1.7 671,741 - +0.1
Or see this region's nucleotide sequence