Strain Fitness in Sphingobium sp. HT1-2 around GFF614

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF612 and GFF613 are separated by 115 nucleotidesGFF613 and GFF614 overlap by 4 nucleotidesGFF614 and GFF615 are separated by 9 nucleotides GFF612 - putative phage repressor, at 612,772 to 613,440 GFF612 GFF613 - hypothetical protein, at 613,556 to 613,741 GFF613 GFF614 - hypothetical protein, at 613,738 to 614,109 GFF614 GFF615 - hypothetical protein, at 614,119 to 615,261 GFF615 Position (kb) 613 614 615Strain fitness (log2 ratio) -3 -2 -1 0 1at 612.770 kb on + strandat 612.770 kb on + strandat 612.778 kb on - strandat 612.778 kb on - strandat 612.781 kb on + strandat 613.542 kb on + strandat 613.542 kb on + strandat 613.542 kb on + strandat 613.545 kb on - strandat 613.547 kb on + strandat 613.550 kb on - strandat 613.555 kb on - strandat 613.555 kb on - strandat 613.556 kb on + strandat 613.556 kb on + strandat 613.564 kb on + strandat 613.569 kb on - strandat 613.601 kb on + strand, within GFF613at 613.609 kb on - strand, within GFF613at 613.609 kb on - strand, within GFF613at 613.609 kb on - strand, within GFF613at 613.647 kb on + strand, within GFF613at 613.654 kb on - strand, within GFF613at 613.655 kb on - strand, within GFF613at 613.655 kb on - strand, within GFF613at 613.722 kb on + strand, within GFF613at 613.730 kb on - strandat 613.737 kb on + strandat 613.745 kb on + strandat 613.748 kb on + strandat 613.753 kb on - strandat 613.753 kb on - strandat 613.787 kb on - strand, within GFF614at 613.792 kb on + strand, within GFF614at 613.800 kb on - strand, within GFF614at 613.800 kb on - strand, within GFF614at 613.800 kb on - strand, within GFF614at 613.831 kb on + strand, within GFF614at 613.871 kb on + strand, within GFF614at 613.874 kb on - strand, within GFF614at 613.874 kb on - strand, within GFF614at 613.874 kb on - strand, within GFF614at 613.875 kb on - strand, within GFF614at 613.879 kb on - strand, within GFF614at 613.884 kb on - strand, within GFF614at 613.888 kb on + strand, within GFF614at 613.901 kb on - strand, within GFF614at 613.905 kb on + strand, within GFF614at 613.913 kb on - strand, within GFF614at 613.917 kb on + strand, within GFF614at 613.932 kb on - strand, within GFF614at 613.940 kb on - strand, within GFF614at 613.972 kb on + strand, within GFF614at 613.980 kb on - strand, within GFF614at 613.980 kb on - strand, within GFF614at 613.980 kb on - strand, within GFF614at 613.985 kb on - strand, within GFF614at 613.985 kb on - strand, within GFF614at 613.992 kb on - strand, within GFF614at 613.999 kb on + strand, within GFF614at 614.007 kb on - strand, within GFF614at 614.022 kb on - strand, within GFF614at 614.054 kb on + strand, within GFF614at 614.057 kb on - strand, within GFF614at 614.062 kb on - strand, within GFF614at 614.062 kb on - strand, within GFF614at 614.062 kb on - strand, within GFF614at 614.062 kb on - strand, within GFF614at 614.062 kb on - strand, within GFF614at 614.062 kb on - strand, within GFF614at 614.064 kb on + strand, within GFF614at 614.072 kb on + strandat 614.072 kb on + strandat 614.080 kb on + strandat 614.118 kb on - strandat 614.141 kb on - strandat 614.141 kb on - strandat 614.150 kb on + strandat 614.165 kb on - strandat 614.165 kb on - strandat 614.195 kb on + strandat 614.203 kb on - strandat 614.203 kb on - strandat 614.211 kb on + strandat 614.211 kb on + strandat 614.211 kb on - strandat 614.238 kb on - strand, within GFF615at 614.267 kb on + strand, within GFF615at 614.267 kb on + strand, within GFF615at 614.267 kb on + strand, within GFF615at 614.267 kb on + strand, within GFF615at 614.267 kb on + strand, within GFF615at 614.267 kb on + strand, within GFF615at 614.271 kb on + strand, within GFF615at 614.271 kb on + strand, within GFF615at 614.275 kb on - strand, within GFF615at 614.275 kb on - strand, within GFF615at 614.275 kb on - strand, within GFF615at 614.275 kb on - strand, within GFF615at 614.275 kb on - strand, within GFF615at 614.275 kb on - strand, within GFF615at 614.275 kb on - strand, within GFF615at 614.285 kb on - strand, within GFF615at 614.301 kb on + strand, within GFF615at 614.309 kb on - strand, within GFF615at 614.360 kb on - strand, within GFF615at 614.436 kb on + strand, within GFF615at 614.436 kb on + strand, within GFF615at 614.466 kb on + strand, within GFF615at 614.495 kb on + strand, within GFF615at 614.502 kb on - strand, within GFF615at 614.508 kb on - strand, within GFF615at 614.517 kb on + strand, within GFF615at 614.530 kb on + strand, within GFF615at 614.564 kb on + strand, within GFF615at 614.596 kb on + strand, within GFF615at 614.596 kb on + strand, within GFF615at 614.596 kb on + strand, within GFF615at 614.604 kb on - strand, within GFF615at 614.614 kb on - strand, within GFF615at 614.645 kb on + strand, within GFF615at 614.658 kb on - strand, within GFF615at 614.690 kb on - strand, within GFF615at 614.708 kb on + strand, within GFF615at 614.711 kb on - strand, within GFF615at 614.723 kb on - strand, within GFF615at 614.774 kb on + strand, within GFF615at 614.839 kb on - strand, within GFF615at 614.866 kb on + strand, within GFF615at 614.866 kb on + strand, within GFF615at 614.876 kb on + strand, within GFF615at 614.884 kb on + strand, within GFF615at 614.892 kb on - strand, within GFF615at 614.894 kb on - strand, within GFF615at 614.901 kb on + strand, within GFF615at 614.901 kb on + strand, within GFF615at 614.922 kb on - strand, within GFF615at 614.960 kb on + strand, within GFF615at 614.972 kb on + strand, within GFF615at 614.972 kb on + strand, within GFF615at 614.980 kb on - strand, within GFF615at 614.980 kb on - strand, within GFF615at 614.993 kb on - strand, within GFF615at 615.009 kb on - strand, within GFF615at 615.044 kb on + strand, within GFF615at 615.045 kb on + strand, within GFF615at 615.053 kb on - strand, within GFF615at 615.055 kb on + strand, within GFF615at 615.055 kb on + strand, within GFF615at 615.058 kb on - strand, within GFF615at 615.087 kb on - strand, within GFF615at 615.091 kb on - strand, within GFF615at 615.091 kb on - strand, within GFF615at 615.092 kb on + strand, within GFF615at 615.102 kb on + strand, within GFF615at 615.107 kb on + strand, within GFF615

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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612,770 + +0.3
612,770 + +0.6
612,778 - -3.1
612,778 - -2.4
612,781 + -0.7
613,542 + +0.7
613,542 + -1.7
613,542 + -0.0
613,545 - -1.1
613,547 + -1.0
613,550 - +0.6
613,555 - -2.0
613,555 - -0.1
613,556 + -1.0
613,556 + -2.0
613,564 + +0.5
613,569 - -0.8
613,601 + GFF613 0.24 -3.1
613,609 - GFF613 0.28 -0.1
613,609 - GFF613 0.28 -0.3
613,609 - GFF613 0.28 -1.9
613,647 + GFF613 0.49 +0.1
613,654 - GFF613 0.53 -2.0
613,655 - GFF613 0.53 +0.4
613,655 - GFF613 0.53 +0.7
613,722 + GFF613 0.89 -1.0
613,730 - -0.0
613,737 + -0.3
613,745 + +0.3
613,748 + +1.1
613,753 - +0.4
613,753 - +1.3
613,787 - GFF614 0.13 -0.4
613,792 + GFF614 0.15 -0.4
613,800 - GFF614 0.17 +0.8
613,800 - GFF614 0.17 -0.8
613,800 - GFF614 0.17 +0.5
613,831 + GFF614 0.25 +1.0
613,871 + GFF614 0.36 +1.6
613,874 - GFF614 0.37 -0.2
613,874 - GFF614 0.37 +0.3
613,874 - GFF614 0.37 +0.2
613,875 - GFF614 0.37 -0.4
613,879 - GFF614 0.38 -0.0
613,884 - GFF614 0.39 +0.5
613,888 + GFF614 0.40 -0.6
613,901 - GFF614 0.44 -0.4
613,905 + GFF614 0.45 -2.1
613,913 - GFF614 0.47 +0.1
613,917 + GFF614 0.48 -1.3
613,932 - GFF614 0.52 +0.6
613,940 - GFF614 0.54 -0.5
613,972 + GFF614 0.63 -1.5
613,980 - GFF614 0.65 -0.3
613,980 - GFF614 0.65 -0.4
613,980 - GFF614 0.65 -0.9
613,985 - GFF614 0.66 +0.4
613,985 - GFF614 0.66 -2.3
613,992 - GFF614 0.68 -0.4
613,999 + GFF614 0.70 -0.2
614,007 - GFF614 0.72 -2.2
614,022 - GFF614 0.76 +0.9
614,054 + GFF614 0.85 +1.1
614,057 - GFF614 0.86 -1.3
614,062 - GFF614 0.87 +0.2
614,062 - GFF614 0.87 -0.4
614,062 - GFF614 0.87 +0.7
614,062 - GFF614 0.87 +0.8
614,062 - GFF614 0.87 +0.4
614,062 - GFF614 0.87 -1.6
614,064 + GFF614 0.88 +0.7
614,072 + +0.3
614,072 + -0.1
614,080 + -0.9
614,118 - +0.5
614,141 - -1.3
614,141 - -0.3
614,150 + +0.4
614,165 - +0.1
614,165 - -1.6
614,195 + -2.3
614,203 - +1.5
614,203 - -0.8
614,211 + -1.7
614,211 + -1.3
614,211 - +0.5
614,238 - GFF615 0.10 -0.2
614,267 + GFF615 0.13 -1.3
614,267 + GFF615 0.13 -2.8
614,267 + GFF615 0.13 -0.6
614,267 + GFF615 0.13 -1.4
614,267 + GFF615 0.13 +0.3
614,267 + GFF615 0.13 +1.5
614,271 + GFF615 0.13 -0.4
614,271 + GFF615 0.13 -0.1
614,275 - GFF615 0.14 -0.8
614,275 - GFF615 0.14 +0.9
614,275 - GFF615 0.14 -1.5
614,275 - GFF615 0.14 +0.3
614,275 - GFF615 0.14 -2.0
614,275 - GFF615 0.14 -1.0
614,275 - GFF615 0.14 -1.4
614,285 - GFF615 0.15 -1.2
614,301 + GFF615 0.16 +0.1
614,309 - GFF615 0.17 -2.6
614,360 - GFF615 0.21 -0.1
614,436 + GFF615 0.28 -0.5
614,436 + GFF615 0.28 -0.3
614,466 + GFF615 0.30 +0.6
614,495 + GFF615 0.33 -1.3
614,502 - GFF615 0.34 +1.2
614,508 - GFF615 0.34 -1.8
614,517 + GFF615 0.35 -0.5
614,530 + GFF615 0.36 -0.7
614,564 + GFF615 0.39 -0.4
614,596 + GFF615 0.42 -1.7
614,596 + GFF615 0.42 +0.1
614,596 + GFF615 0.42 -0.8
614,604 - GFF615 0.42 +0.2
614,614 - GFF615 0.43 +0.7
614,645 + GFF615 0.46 +0.8
614,658 - GFF615 0.47 -0.3
614,690 - GFF615 0.50 +0.1
614,708 + GFF615 0.52 -1.0
614,711 - GFF615 0.52 +0.9
614,723 - GFF615 0.53 -1.3
614,774 + GFF615 0.57 -1.1
614,839 - GFF615 0.63 -2.2
614,866 + GFF615 0.65 -0.2
614,866 + GFF615 0.65 -0.4
614,876 + GFF615 0.66 -0.4
614,884 + GFF615 0.67 -0.7
614,892 - GFF615 0.68 -1.1
614,894 - GFF615 0.68 +0.5
614,901 + GFF615 0.68 -0.3
614,901 + GFF615 0.68 +0.0
614,922 - GFF615 0.70 +1.4
614,960 + GFF615 0.74 -0.4
614,972 + GFF615 0.75 +1.1
614,972 + GFF615 0.75 +0.3
614,980 - GFF615 0.75 -0.1
614,980 - GFF615 0.75 -0.7
614,993 - GFF615 0.76 +1.4
615,009 - GFF615 0.78 -0.2
615,044 + GFF615 0.81 -2.3
615,045 + GFF615 0.81 -0.6
615,053 - GFF615 0.82 -1.7
615,055 + GFF615 0.82 -0.2
615,055 + GFF615 0.82 -0.6
615,058 - GFF615 0.82 +0.3
615,087 - GFF615 0.85 -1.3
615,091 - GFF615 0.85 +0.3
615,091 - GFF615 0.85 -0.5
615,092 + GFF615 0.85 +1.3
615,102 + GFF615 0.86 -0.3
615,107 + GFF615 0.86 -0.5

Or see this region's nucleotide sequence