Strain Fitness in Sphingobium sp. HT1-2 around GFF5397

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,375,107	+		GFF5396	0.39	-0.9
5,375,107	+		GFF5396	0.39	+0.6
5,375,107	+		GFF5396	0.39	-0.3
5,375,110	+		GFF5396	0.39	-0.8
5,375,110	+		GFF5396	0.39	-0.5
5,375,115	-		GFF5396	0.39	+0.5
5,375,118	-		GFF5396	0.40	+0.0
5,375,118	-		GFF5396	0.40	+0.4
5,375,118	-		GFF5396	0.40	-0.3
5,375,118	-		GFF5396	0.40	+0.1
5,375,121	+		GFF5396	0.40	-0.1
5,375,129	-		GFF5396	0.40	+0.2
5,375,137	+		GFF5396	0.41	+0.1
5,375,143	+		GFF5396	0.41	-0.3
5,375,147	+		GFF5396	0.42	-0.4
5,375,151	-		GFF5396	0.42	-0.4
5,375,151	-		GFF5396	0.42	+0.3
5,375,151	-		GFF5396	0.42	-0.9
5,375,151	-		GFF5396	0.42	-1.1
5,375,157	+		GFF5396	0.42	+0.6
5,375,165	-		GFF5396	0.43	-0.1
5,375,182	-		GFF5396	0.44	+0.1
5,375,193	+		GFF5396	0.45	-1.8
5,375,195	-		GFF5396	0.45	+0.6
5,375,198	+		GFF5396	0.45	-0.9
5,375,198	+		GFF5396	0.45	+0.3
5,375,198	+		GFF5396	0.45	-0.5
5,375,198	+		GFF5396	0.45	-1.1
5,375,198	+		GFF5396	0.45	-0.8
5,375,198	+		GFF5396	0.45	-0.8
5,375,199	+		GFF5396	0.45	-1.3
5,375,199	-		GFF5396	0.45	-0.8
5,375,201	-		GFF5396	0.45	-1.6
5,375,206	-		GFF5396	0.45	-2.0
5,375,206	-		GFF5396	0.45	+0.4
5,375,206	-		GFF5396	0.45	-0.1
5,375,211	-		GFF5396	0.46	-0.6
5,375,211	-		GFF5396	0.46	+0.3
5,375,268	+		GFF5396	0.49	-0.7
5,375,269	+		GFF5396	0.49	-1.5
5,375,269	+		GFF5396	0.49	+0.3
5,375,269	+		GFF5396	0.49	+0.1
5,375,269	+		GFF5396	0.49	+0.4
5,375,269	+		GFF5396	0.49	+0.2
5,375,269	+		GFF5396	0.49	-1.3
5,375,276	-		GFF5396	0.50	-0.2
5,375,277	-		GFF5396	0.50	+0.6
5,375,277	-		GFF5396	0.50	-1.8
5,375,277	-		GFF5396	0.50	-1.0
5,375,277	-		GFF5396	0.50	+0.2
5,375,285	+		GFF5396	0.51	-1.9
5,375,288	-		GFF5396	0.51	-1.8
5,375,288	-		GFF5396	0.51	-0.4
5,375,288	-		GFF5396	0.51	-1.6
5,375,290	+		GFF5396	0.51	+0.1
5,375,290	+		GFF5396	0.51	-0.6
5,375,290	+		GFF5396	0.51	-2.2
5,375,290	+		GFF5396	0.51	-0.8
5,375,290	+		GFF5396	0.51	-0.3
5,375,290	+		GFF5396	0.51	+0.0
5,375,290	+		GFF5396	0.51	-2.5
5,375,290	+		GFF5396	0.51	+0.2
5,375,290	+		GFF5396	0.51	-1.7
5,375,293	-		GFF5396	0.51	-1.1
5,375,297	-		GFF5396	0.51	+0.7
5,375,298	-		GFF5396	0.51	-1.5
5,375,298	-		GFF5396	0.51	+0.9
5,375,298	-		GFF5396	0.51	+0.2
5,375,298	-		GFF5396	0.51	-1.5
5,375,298	-		GFF5396	0.51	-0.2
5,375,298	-		GFF5396	0.51	-1.1
5,375,298	-		GFF5396	0.51	-0.4
5,375,298	-		GFF5396	0.51	+0.7
5,375,318	+		GFF5396	0.53	-0.2
5,375,326	-		GFF5396	0.53	-2.5
5,375,335	+		GFF5396	0.54	-0.8
5,375,335	+		GFF5396	0.54	+0.7
5,375,335	+		GFF5396	0.54	-1.7
5,375,336	-		GFF5396	0.54	-1.5
5,375,343	-		GFF5396	0.54	-1.1
5,375,343	-		GFF5396	0.54	-0.6
5,375,350	+		GFF5396	0.55	+0.5
5,375,350	+		GFF5396	0.55	+0.2
5,375,358	-		GFF5396	0.55	-0.2
5,375,358	-		GFF5396	0.55	-1.8
5,375,365	+		GFF5396	0.56	-2.8
5,375,369	+		GFF5396	0.56	+0.1
5,375,373	-		GFF5396	0.56	-0.2
5,375,391	+		GFF5396	0.57	-0.3
5,375,396	+		GFF5396	0.58	+0.4
5,375,398	+		GFF5396	0.58	+0.2
5,375,399	-		GFF5396	0.58	-0.5
5,375,399	-		GFF5396	0.58	-1.2
5,375,399	-		GFF5396	0.58	-1.4
5,375,408	+		GFF5396	0.59	-1.4
5,375,416	-		GFF5396	0.59	-0.4
5,375,416	-		GFF5396	0.59	+0.8
5,375,426	+		GFF5396	0.60	-2.2
5,375,439	-		GFF5396	0.61	-1.7
5,375,444	-		GFF5396	0.61	-0.6
5,375,463	+		GFF5396	0.62	+0.6
5,375,492	-		GFF5396	0.64	-0.4
5,375,505	+		GFF5396	0.65	-1.2
5,375,523	-		GFF5396	0.66	+0.6
5,375,527	-		GFF5396	0.66	-0.9
5,375,528	-		GFF5396	0.66	-1.3
5,375,539	+		GFF5396	0.67	-1.4
5,375,547	-		GFF5396	0.68	-3.0
5,375,604	+		GFF5396	0.71	-1.4
5,375,623	+		GFF5396	0.73	+1.7
5,375,631	-		GFF5396	0.73	-0.2
5,375,637	+		GFF5396	0.73	-1.5
5,375,637	+		GFF5396	0.73	+1.1
5,375,637	+		GFF5396	0.73	-0.1
5,375,642	+		GFF5396	0.74	+0.0
5,375,642	+		GFF5396	0.74	+0.2
5,375,668	+		GFF5396	0.75	-0.2
5,375,673	+		GFF5396	0.76	+1.1
5,375,673	+		GFF5396	0.76	-0.8
5,375,673	+		GFF5396	0.76	-1.0
5,375,676	-		GFF5396	0.76	-1.4
5,375,681	-		GFF5396	0.76	-1.6
5,375,681	-		GFF5396	0.76	-0.2
5,375,691	-		GFF5396	0.77	-0.4
5,375,691	-		GFF5396	0.77	-0.6
5,375,701	-		GFF5396	0.78	-0.3
5,375,716	+		GFF5396	0.79	+0.6
5,375,718	-		GFF5396	0.79	+0.9
5,375,724	-		GFF5396	0.79	-1.0
5,375,752	+		GFF5396	0.81	-0.5
5,375,770	+		GFF5396	0.82	-0.8
5,375,784	-		GFF5396	0.83	-1.0
5,375,794	+		GFF5396	0.84	-1.3
5,375,799	+		GFF5396	0.84	-0.4
5,375,804	+		GFF5396	0.84	-1.0
5,375,807	-		GFF5396	0.85	-0.9
5,375,807	-		GFF5396	0.85	-0.3
5,375,807	-		GFF5396	0.85	-0.1
5,375,808	+		GFF5396	0.85	-1.8
5,375,809	+		GFF5396	0.85	+0.4
5,375,816	-		GFF5396	0.85	-0.5
5,375,817	-		GFF5396	0.85	-0.1
5,375,834	+		GFF5396	0.86	-1.6
5,375,855	+		GFF5396	0.88	+0.2
5,375,855	+		GFF5396	0.88	-0.3
5,375,863	-		GFF5396	0.88	-1.4
5,375,863	-		GFF5396	0.88	-0.6
5,375,874	-		GFF5396	0.89	-1.1
5,375,874	-		GFF5396	0.89	-0.2
5,375,876	+		GFF5396	0.89	-0.5
5,375,884	-		GFF5396	0.90	-1.5
5,375,907	-				-0.8
5,375,909	+				-0.7
5,375,909	+				-2.9
5,375,909	+				-1.2
5,375,909	+				-0.4
5,375,909	+				-0.1
5,375,909	+				-0.3
5,375,909	+				-1.6
5,375,909	+				-0.7
5,375,917	-				-0.7
5,375,917	-				-1.4
5,375,917	-				-0.8
5,375,917	-				+0.2
5,375,917	-				+0.1
5,375,917	-				-2.0
5,375,917	-				-1.5
5,375,917	-				-0.7
5,375,922	-				-0.7
5,375,931	-				+1.3
5,375,937	-				-1.6
5,375,953	+				+0.1
5,375,953	+				-1.7
5,375,953	+				-1.4
5,375,953	+				+0.4
5,375,961	-				-2.3
5,375,961	-				-0.7
5,375,961	-				-2.3
5,375,961	-				-0.2
5,375,961	-				-0.6
5,375,994	-				-2.9
5,375,994	-				-0.7
5,376,022	+				-2.6
5,376,030	-				-1.2
5,376,038	-				-1.3
5,376,044	+				-2.4
5,376,052	-				+0.5
5,376,078	-				+0.2
5,376,078	-				+0.2
5,376,135	+				-0.2
5,376,135	+				-0.1
5,376,151	+		GFF5397	0.13	-0.6
5,376,151	+		GFF5397	0.13	-0.8
5,376,154	-		GFF5397	0.14	-0.8
5,376,158	+		GFF5397	0.15	-1.8
5,376,159	-		GFF5397	0.15	-0.1
5,376,159	-		GFF5397	0.15	+0.3
5,376,166	-		GFF5397	0.17	+0.9
5,376,166	-		GFF5397	0.17	-1.1
5,376,166	-		GFF5397	0.17	-0.3
5,376,166	-		GFF5397	0.17	-0.1
5,376,166	-		GFF5397	0.17	+0.3
5,376,170	+		GFF5397	0.18	-0.4
5,376,180	+		GFF5397	0.21	+0.5
5,376,196	+		GFF5397	0.26	-1.8
5,376,196	+		GFF5397	0.26	+0.8
5,376,204	+		GFF5397	0.28	+0.3
5,376,208	-		GFF5397	0.29	-0.6
5,376,218	+		GFF5397	0.32	-0.3
5,376,226	-		GFF5397	0.34	+0.4
5,376,246	-		GFF5397	0.40	+0.4
5,376,258	+		GFF5397	0.44	+0.8
5,376,258	+		GFF5397	0.44	-0.4
5,376,258	+		GFF5397	0.44	-0.8
5,376,258	+		GFF5397	0.44	-1.0
5,376,260	+		GFF5397	0.44	-1.2
5,376,265	+		GFF5397	0.46	-1.2
5,376,266	-		GFF5397	0.46	-0.8
5,376,266	-		GFF5397	0.46	-0.9
5,376,268	-		GFF5397	0.47	-0.2
5,376,273	+		GFF5397	0.48	-0.6
5,376,273	+		GFF5397	0.48	-1.1
5,376,273	+		GFF5397	0.48	-0.6
5,376,273	-		GFF5397	0.48	-0.7
5,376,273	-		GFF5397	0.48	-0.8
5,376,281	-		GFF5397	0.50	-1.1
5,376,283	+		GFF5397	0.51	-0.4
5,376,286	-		GFF5397	0.52	-0.4
5,376,287	+		GFF5397	0.52	-1.1
5,376,305	+		GFF5397	0.57	-0.3
5,376,319	+		GFF5397	0.61	-0.8
5,376,319	+		GFF5397	0.61	-0.1
5,376,319	-		GFF5397	0.61	+0.0
5,376,327	-		GFF5397	0.64	-1.8
5,376,327	-		GFF5397	0.64	-1.7
5,376,348	+		GFF5397	0.70	-0.5
5,376,350	+		GFF5397	0.70	+1.1
5,376,359	+		GFF5397	0.73	-2.2
5,376,365	-		GFF5397	0.74	+0.0
5,376,370	-		GFF5397	0.76	-1.4
5,376,372	+		GFF5397	0.76	-2.9
5,376,372	-		GFF5397	0.76	-0.9
5,376,372	-		GFF5397	0.76	-1.0
5,376,374	+		GFF5397	0.77	-1.2
5,376,377	-		GFF5397	0.78	+0.2
5,376,382	+		GFF5397	0.79	+1.1
5,376,382	+		GFF5397	0.79	-0.6
5,376,382	+		GFF5397	0.79	-0.4
5,376,389	+		GFF5397	0.81	-1.2
5,376,390	-		GFF5397	0.82	-2.4
5,376,390	-		GFF5397	0.82	-1.2
5,376,390	-		GFF5397	0.82	+0.2
5,376,410	+		GFF5397	0.87	-0.5
5,376,410	+		GFF5397	0.87	-0.2
5,376,423	-				-0.8
5,376,423	-				-0.2
5,376,432	-				+0.5
5,376,466	+				-1.1
5,376,466	+				-0.0
5,376,466	+				-0.2
5,376,471	+				-0.4
5,376,474	-				-1.2
5,376,474	-				-0.8
5,376,474	-				-3.2
5,376,474	-				-0.0
5,376,477	+				-0.8
5,376,483	+				-1.7
5,376,483	+				-0.7
5,376,503	+		GFF5398	0.13	+0.2
5,376,510	+		GFF5398	0.14	-0.2
5,376,511	-		GFF5398	0.14	-1.4
5,376,523	+		GFF5398	0.17	-0.6
5,376,523	+		GFF5398	0.17	-3.4
5,376,523	+		GFF5398	0.17	-1.9
5,376,523	-		GFF5398	0.17	-1.6
5,376,531	-		GFF5398	0.19	+0.3
5,376,531	-		GFF5398	0.19	+0.1
5,376,531	-		GFF5398	0.19	-1.3
5,376,531	-		GFF5398	0.19	-1.7
5,376,531	-		GFF5398	0.19	-0.1
5,376,533	+		GFF5398	0.20	+0.5
5,376,536	-		GFF5398	0.20	-0.8
5,376,567	+		GFF5398	0.28	-0.9
5,376,575	-		GFF5398	0.30	+0.2
5,376,578	+		GFF5398	0.30	-1.5
5,376,581	-		GFF5398	0.31	+0.2
5,376,586	+		GFF5398	0.32	-0.6
5,376,588	-		GFF5398	0.33	-2.5
5,376,593	-		GFF5398	0.34	-0.8
5,376,596	+		GFF5398	0.35	-0.8
5,376,604	-		GFF5398	0.36	-0.1
5,376,604	-		GFF5398	0.36	-2.0
5,376,604	-		GFF5398	0.36	-0.9
5,376,606	+		GFF5398	0.37	-0.9
5,376,614	-		GFF5398	0.39	+0.6
5,376,619	+		GFF5398	0.40	+0.1
5,376,619	+		GFF5398	0.40	-1.1
5,376,627	-		GFF5398	0.42	-1.8
5,376,627	-		GFF5398	0.42	-1.4
5,376,628	-		GFF5398	0.42	-0.1
5,376,632	-		GFF5398	0.43	-0.1
5,376,636	-		GFF5398	0.44	-2.6
5,376,663	+		GFF5398	0.50	+0.8
5,376,663	+		GFF5398	0.50	-2.0
5,376,663	+		GFF5398	0.50	-1.5
5,376,663	+		GFF5398	0.50	-0.2
5,376,663	+		GFF5398	0.50	-0.5
5,376,663	+		GFF5398	0.50	-0.0
5,376,664	+		GFF5398	0.51	-0.2
5,376,664	+		GFF5398	0.51	-0.3
5,376,664	+		GFF5398	0.51	+0.8
5,376,664	+		GFF5398	0.51	+0.9
5,376,671	-		GFF5398	0.52	+0.1
5,376,671	-		GFF5398	0.52	-2.6
5,376,671	-		GFF5398	0.52	-1.6
5,376,672	-		GFF5398	0.52	+0.2
5,376,672	-		GFF5398	0.52	-1.6
5,376,710	-		GFF5398	0.61	+0.2
5,376,720	-		GFF5398	0.64	+0.3
5,376,724	+		GFF5398	0.65	-0.2
5,376,726	+		GFF5398	0.65	+0.2
5,376,753	+		GFF5398	0.72	-0.5
5,376,753	+		GFF5398	0.72	-0.3
5,376,756	+		GFF5398	0.72	+0.3
5,376,756	+		GFF5398	0.72	-0.3
5,376,758	+		GFF5398	0.73	-2.0
5,376,761	+		GFF5398	0.74	-0.6
5,376,761	+		GFF5398	0.74	-0.9
5,376,761	+		GFF5398	0.74	-1.7
5,376,761	+		GFF5398	0.74	-0.9
5,376,761	-		GFF5398	0.74	-0.4
5,376,764	-		GFF5398	0.74	+0.7
5,376,766	+		GFF5398	0.75	+0.9
5,376,769	-		GFF5398	0.75	-0.4
5,376,769	-		GFF5398	0.75	-1.0
5,376,774	-		GFF5398	0.77	+0.7
5,376,774	-		GFF5398	0.77	-0.8
5,376,774	-		GFF5398	0.77	+0.2
5,376,782	-		GFF5398	0.78	-0.7
5,376,782	-		GFF5398	0.78	-0.5
5,376,787	-		GFF5398	0.80	-0.4
5,376,790	+		GFF5398	0.80	-0.8
5,376,790	+		GFF5398	0.80	-1.4
5,376,798	-		GFF5398	0.82	+0.4
5,376,804	+		GFF5398	0.84	-1.6
5,376,810	-		GFF5398	0.85	-0.6
5,376,826	+		GFF5398	0.89	-0.7
5,376,826	+		GFF5398	0.89	+0.9
5,376,826	+		GFF5398	0.89	-1.8
5,376,829	-		GFF5398	0.90	-1.4
5,376,831	+				-0.2
5,376,831	+				-1.2
5,376,831	+				-1.9
5,376,831	+				-1.5
5,376,838	-				-0.6
5,376,839	-				+0.4
5,376,877	+				-1.6
5,376,882	+				+0.3
5,376,904	+				-0.2
5,376,904	+				-1.1
5,376,913	-				+0.6
5,376,913	-				+0.2
5,376,925	-				-1.5
5,376,933	+				-0.7
5,376,933	+				+0.4
5,376,941	-				-1.6
5,376,996	-				-0.9
5,377,002	+				-0.4
5,377,010	-				+0.1
5,377,030	-		GFF5399	0.30	-0.8
5,377,030	-		GFF5399	0.30	+0.3
5,377,433	-				-2.2