Strain Fitness in Sphingobium sp. HT1-2 around GFF5386

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,366,289	-				-0.6
5,366,322	+				+1.2
5,366,322	+				+0.1
5,366,322	+				-1.6
5,366,330	-				-1.3
5,366,335	-				+1.6
5,366,337	+				+0.1
5,366,337	+				-0.6
5,366,337	+				-0.2
5,366,345	-				-1.2
5,366,371	+				-0.4
5,366,419	+				+0.2
5,366,468	+				+0.3
5,366,521	+				-0.2
5,366,550	+				-0.5
5,366,766	+				+0.1
5,366,781	+				+0.6
5,366,822	+				+0.6
5,366,822	+				-0.4
5,366,839	+				-0.7
5,366,864	+		GFF5385	0.27	+0.0
5,366,865	-		GFF5385	0.28	+0.9
5,366,869	+		GFF5385	0.32	+0.2
5,366,869	+		GFF5385	0.32	+1.0
5,366,869	+		GFF5385	0.32	+0.7
5,366,872	-		GFF5385	0.34	-0.8
5,366,872	-		GFF5385	0.34	+1.0
5,366,877	-		GFF5385	0.39	-0.6
5,366,877	-		GFF5385	0.39	+0.1
5,366,877	-		GFF5385	0.39	-0.9
5,366,885	+		GFF5385	0.46	+0.1
5,366,885	-		GFF5385	0.46	+1.1
5,366,916	-		GFF5385	0.73	-2.1
5,366,916	-		GFF5385	0.73	-2.4
5,366,916	-		GFF5385	0.73	+0.2
5,366,945	+				+0.4
5,366,948	-				-0.1
5,366,953	-				-0.1
5,366,982	-				+0.6
5,366,996	+				-0.4
5,366,996	+				+0.9
5,366,996	+				+0.3
5,366,996	+				-1.4
5,367,004	-				-2.1
5,367,014	-				+0.9
5,367,014	-				+0.2
5,367,031	+				-0.2
5,367,070	-				-0.5
5,367,131	+				+0.1
5,367,137	+				-0.6
5,367,139	+				-1.2
5,367,139	+				-0.6
5,367,139	+				+0.1
5,367,139	-				+0.8
5,367,145	-				+0.9
5,367,165	+				-0.3
5,367,178	-				+0.1
5,367,196	+				+1.0
5,367,204	-				-1.0
5,367,204	-				+0.9
5,367,302	+		GFF5386	0.32	+0.3
5,367,302	+		GFF5386	0.32	-0.2
5,367,302	+		GFF5386	0.32	+0.4
5,367,302	+		GFF5386	0.32	-0.2
5,367,307	+		GFF5386	0.35	+0.7
5,367,315	-		GFF5386	0.41	-0.5
5,367,334	-		GFF5386	0.54	-0.5
5,367,334	-		GFF5386	0.54	+0.2
5,367,339	+		GFF5386	0.57	-0.9
5,367,339	-		GFF5386	0.57	-0.6
5,367,341	+		GFF5386	0.59	-0.1
5,367,341	+		GFF5386	0.59	-2.8
5,367,341	+		GFF5386	0.59	+0.2
5,367,349	-		GFF5386	0.64	-0.6
5,367,349	-		GFF5386	0.64	-0.1
5,367,349	-		GFF5386	0.64	+0.1
5,367,349	-		GFF5386	0.64	+0.0
5,367,349	-		GFF5386	0.64	-1.4
5,367,371	-		GFF5386	0.79	+1.0
5,367,399	-				-0.2
5,367,409	+				-1.1
5,367,417	-				+0.1
5,367,433	-				-0.9
5,367,454	+				-1.1
5,367,480	+				-1.0
5,367,495	+				-0.9
5,367,495	+				-1.0
5,367,503	-				+0.0
5,367,503	-				+1.4
5,367,542	+				-1.8
5,367,548	-				+0.6
5,367,564	+				-1.9
5,367,564	-				-0.3
5,367,566	-				+1.0
5,367,571	-				-2.8
5,367,575	+				-1.0
5,367,575	+				+0.0
5,367,583	-				-0.3
5,367,583	-				+1.0
5,367,591	-				+0.1
5,367,591	-				-2.0
5,367,591	-				-0.3
5,367,591	-				-1.9
5,367,605	+				-0.4
5,367,605	+				-0.3
5,367,613	-				+1.5
5,367,631	+				+0.1
5,367,673	-				-0.4
5,367,676	-				-0.1
5,367,691	+				-0.2
5,367,691	+				-1.4
5,367,699	-				-1.5
5,367,699	-				-0.4
5,367,699	-				+0.1
5,367,721	+				-1.0
5,367,729	+				+0.2
5,367,729	-				+0.7
5,367,729	-				+0.7
5,367,729	-				+0.9
5,367,730	-				-0.2
5,367,737	+				-0.8
5,367,737	+				+0.6
5,367,737	+				-0.1
5,367,741	+				-0.5
5,367,745	-				-1.5
5,367,745	-				-1.6
5,367,800	+				-1.5
5,367,805	+				+1.1
5,367,805	+				+0.5
5,367,805	+				+0.7
5,367,805	+				+0.6
5,367,805	+				+0.7
5,367,805	+				-1.6
5,367,805	+				-1.4
5,367,810	+				-1.6
5,367,810	+				-0.9
5,367,810	+				-0.3
5,367,810	+				-1.4
5,367,810	+				+0.7
5,367,810	+				-0.1
5,367,813	-				+1.1
5,367,813	-				+0.1
5,367,815	+				-1.8
5,367,818	-				-1.6
5,367,818	-				+0.2
5,367,818	-				+0.1
5,367,818	-				+0.6
5,367,818	-				+0.1
5,367,824	+				-0.9
5,367,830	-				+0.7
5,367,837	-				-0.6
5,367,839	+				+0.2
5,367,839	+				-0.2
5,367,839	+				-1.1
5,367,839	+				+1.0
5,367,844	+				+0.2
5,367,844	+				+0.8
5,367,844	+				-2.4
5,367,844	+				+0.8
5,367,844	+				+0.2
5,367,905	+				-0.8
5,367,910	+				-0.3
5,367,910	+				-2.0
5,367,910	+				-0.3
5,367,910	+				-0.9
5,367,910	+				-0.5
5,367,910	+				+0.4
5,367,910	+				-0.2
5,367,910	+				-0.8
5,367,910	+				+0.2
5,367,910	+				+1.2
5,367,910	+				+1.8
5,367,910	+				-0.7
5,367,910	+				-1.1
5,367,910	+				-0.2
5,367,910	+				-0.4
5,367,910	+				-0.1
5,367,910	+				-0.7
5,367,910	+				+0.3
5,367,910	+				-0.9
5,367,910	+				+1.4
5,367,910	+				+0.7
5,367,910	+				+0.3
5,367,910	+				+0.7
5,367,910	+				-1.1
5,367,912	+				-0.8
5,367,912	+				+0.8
5,367,918	-				+0.5
5,367,918	-				+0.1
5,367,918	-				+0.1
5,367,918	-				+0.8
5,367,918	-				+0.8
5,367,918	-				-1.8
5,367,918	-				-0.9
5,367,918	-				-1.4
5,367,918	-				-0.5
5,367,918	-				+0.1
5,367,918	-				+0.2
5,367,918	-				-0.1
5,367,918	-				+0.5
5,367,918	-				+0.1
5,367,918	-				+0.1
5,367,950	-				-0.9
5,367,951	-				-1.0
5,367,965	-				+0.1
5,367,998	-				-1.8
5,367,999	+				-1.8
5,367,999	-				-0.9
5,368,013	+				+1.0
5,368,016	+				-0.5
5,368,031	-				+0.6
5,368,034	+				-0.4
5,368,042	-				-0.1
5,368,050	+				-0.1
5,368,050	+				-1.0
5,368,052	-				+0.6
5,368,058	-				-2.7
5,368,079	+				-0.3
5,368,167	-				-1.8
5,368,214	-				+0.2
5,368,219	+				-1.5
5,368,221	+				+1.3
5,368,223	+				-0.1
5,368,224	+				-0.1
5,368,232	-				-0.2
5,368,236	+				+0.7
5,368,236	+				-0.0
5,368,236	+				-0.0
5,368,236	+				-0.4
5,368,236	+				-0.5
5,368,236	+				-0.7
5,368,236	+				+0.1
5,368,236	+				-0.0
5,368,236	+				-0.4
5,368,238	-				-0.9
5,368,244	-				-0.6
5,368,244	-				-0.3
5,368,244	-				-0.0
5,368,244	-				+0.3
5,368,244	-				+0.6
5,368,244	-				-1.0
5,368,244	-				+0.6
5,368,273	+				+1.3
5,368,290	+				+0.4
5,368,292	+				+0.4
5,368,292	+				-0.4
5,368,300	-				+0.4
5,368,300	-				+0.4
5,368,305	-				-2.1
5,368,332	+				-0.1
5,368,352	+				+0.3
5,368,352	+				+0.6
5,368,352	+				-0.9
5,368,352	+				+0.3
5,368,352	+				+0.2
5,368,352	+				+0.4
5,368,356	-				-2.0
5,368,360	-				-1.3
5,368,360	-				-0.6
5,368,360	-				+0.9
5,368,360	-				+0.9
5,368,360	-				-0.2
5,368,360	-				+0.4
5,368,360	-				+0.0
5,368,360	-				+0.7
5,368,360	-				-0.6