Strain Fitness in Sphingobium sp. HT1-2 around GFF5376

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,357,596	+		GFF5375	0.11	-1.1
5,357,759	-		GFF5375	0.72	+0.7
5,357,936	+				-0.5
5,357,937	-				-0.2
5,357,944	-				+0.1
5,357,953	+				+0.7
5,357,975	-				+0.2
5,357,975	-				-0.6
5,357,997	+				+0.4
5,357,997	+				+1.4
5,357,997	+				-0.4
5,357,997	+				+0.2
5,358,005	-				-0.6
5,358,005	-				+0.2
5,358,005	-				-0.6
5,358,005	-				+0.4
5,358,005	-				+0.4
5,358,005	-				-0.1
5,358,005	-				-1.2
5,358,005	-				-0.3
5,358,014	+				-0.5
5,358,032	-				-0.6
5,358,034	+				+0.5
5,358,040	+				+0.0
5,358,040	+				-0.6
5,358,040	+				-1.8
5,358,045	+				+0.0
5,358,050	+				+0.1
5,358,057	+				-2.5
5,358,059	-				+0.3
5,358,068	-				-2.7
5,358,109	+				-0.1
5,358,124	+				+0.1
5,358,124	+				-0.8
5,358,124	+				+0.9
5,358,124	+				+0.7
5,358,124	+				+0.8
5,358,132	-				+0.9
5,358,132	-				-0.2
5,358,189	+				+0.7
5,358,191	+				-0.2
5,358,201	+				-0.3
5,358,201	+				+0.2
5,358,201	+				-0.1
5,358,209	-				+0.0
5,358,238	+				+1.0
5,358,246	-				+0.2
5,358,246	-				-0.0
5,358,250	+				-1.5
5,358,250	+				-0.6
5,358,256	-				+0.2
5,358,258	-				+0.3
5,358,263	+				-0.5
5,358,281	-				+1.2
5,358,281	-				-0.4
5,358,281	-				+0.4
5,358,288	-				-1.3
5,358,292	-				-0.1
5,358,310	+				-1.2
5,358,320	-				-0.8
5,358,350	+				-0.9
5,358,358	+				+0.4
5,358,369	-				-0.2
5,358,378	+				+0.7
5,358,378	-				-1.8
5,358,385	+				-0.2
5,358,385	+				-0.2
5,358,385	+				+1.2
5,358,385	+				-1.3
5,358,386	-				+0.1
5,358,388	-				-0.5
5,358,390	+				+0.0
5,358,390	+				-1.8
5,358,390	+				-0.3
5,358,390	+				-1.3
5,358,390	+				+1.3
5,358,393	-				-1.3
5,358,393	-				-0.3
5,358,393	-				-0.3
5,358,393	-				+0.3
5,358,393	-				-0.6
5,358,393	-				+0.1
5,358,393	-				-0.1
5,358,393	-				-0.1
5,358,393	-				-0.5
5,358,393	-				+1.5
5,358,398	-				+1.2
5,358,398	-				+0.9
5,358,398	-				-0.8
5,358,409	+				-0.8
5,358,592	+				-1.5
5,358,626	+				-2.4
5,358,626	+				-1.4
5,358,626	+				+0.7
5,358,626	+				-0.9
5,358,626	+				-2.6
5,358,626	+				+0.1
5,358,634	-				+0.6
5,358,634	-				-1.1
5,358,634	-				-0.1
5,358,634	-				-1.3
5,358,640	+				-0.1
5,358,684	+				-2.7
5,358,684	-				-2.4
5,358,712	+				+0.7
5,358,718	-				-1.9
5,358,721	+				+1.0
5,358,721	+				-0.3
5,358,721	+				-0.9
5,358,729	-		GFF5376	0.10	-1.2
5,358,743	+		GFF5376	0.11	-1.2
5,358,743	+		GFF5376	0.11	+1.5
5,358,749	+		GFF5376	0.12	-1.5
5,358,789	-		GFF5376	0.15	-0.1
5,358,851	+		GFF5376	0.19	-0.4
5,358,873	-		GFF5376	0.21	+1.2
5,358,873	-		GFF5376	0.21	-2.1
5,358,873	-		GFF5376	0.21	-1.6
5,358,885	+		GFF5376	0.21	-1.3
5,358,885	+		GFF5376	0.21	-2.0
5,358,885	+		GFF5376	0.21	+0.6
5,358,885	+		GFF5376	0.21	-0.5
5,358,885	+		GFF5376	0.21	-0.6
5,358,885	+		GFF5376	0.21	+0.1
5,358,885	+		GFF5376	0.21	+0.2
5,358,885	+		GFF5376	0.21	+0.4
5,358,885	+		GFF5376	0.21	-1.8
5,358,890	+		GFF5376	0.22	-0.3
5,358,890	+		GFF5376	0.22	-0.8
5,358,893	-		GFF5376	0.22	-0.9
5,358,893	-		GFF5376	0.22	-0.6
5,358,893	-		GFF5376	0.22	+0.6
5,358,893	-		GFF5376	0.22	-0.2
5,358,893	-		GFF5376	0.22	-0.1
5,358,893	-		GFF5376	0.22	+0.5
5,358,905	+		GFF5376	0.23	-0.5
5,358,906	+		GFF5376	0.23	-0.1
5,358,927	+		GFF5376	0.24	-1.1
5,358,961	-		GFF5376	0.27	+0.7
5,359,072	+		GFF5376	0.35	+0.1
5,359,073	-		GFF5376	0.35	-2.1
5,359,097	-		GFF5376	0.36	-0.1
5,359,100	+		GFF5376	0.37	-1.1
5,359,102	+		GFF5376	0.37	+0.8
5,359,107	+		GFF5376	0.37	-0.4
5,359,108	+		GFF5376	0.37	-1.3
5,359,108	+		GFF5376	0.37	-0.6
5,359,108	+		GFF5376	0.37	-0.3
5,359,108	+		GFF5376	0.37	-2.2
5,359,108	+		GFF5376	0.37	-0.2
5,359,108	+		GFF5376	0.37	+0.8
5,359,108	+		GFF5376	0.37	+0.2
5,359,108	+		GFF5376	0.37	+1.8
5,359,108	+		GFF5376	0.37	-2.1
5,359,108	+		GFF5376	0.37	+1.0
5,359,108	+		GFF5376	0.37	+0.1
5,359,108	+		GFF5376	0.37	+0.7
5,359,108	+		GFF5376	0.37	-1.0
5,359,108	+		GFF5376	0.37	-1.5
5,359,108	+		GFF5376	0.37	-0.6
5,359,108	-		GFF5376	0.37	-1.0
5,359,108	-		GFF5376	0.37	+0.9
5,359,116	-		GFF5376	0.38	+1.3
5,359,116	-		GFF5376	0.38	-1.3
5,359,116	-		GFF5376	0.38	+0.3
5,359,116	-		GFF5376	0.38	-3.0
5,359,116	-		GFF5376	0.38	-1.2
5,359,116	-		GFF5376	0.38	+1.4
5,359,116	-		GFF5376	0.38	-0.8
5,359,116	-		GFF5376	0.38	+0.8
5,359,116	-		GFF5376	0.38	-0.1
5,359,116	-		GFF5376	0.38	-0.6
5,359,116	-		GFF5376	0.38	+0.3
5,359,117	+		GFF5376	0.38	-0.8
5,359,117	+		GFF5376	0.38	+0.4
5,359,117	+		GFF5376	0.38	+1.7
5,359,133	+		GFF5376	0.39	+1.0
5,359,133	+		GFF5376	0.39	+0.2
5,359,133	+		GFF5376	0.39	-0.6
5,359,134	+		GFF5376	0.39	+0.4
5,359,141	-		GFF5376	0.39	-0.2
5,359,141	-		GFF5376	0.39	-0.7
5,359,143	+		GFF5376	0.40	+0.0
5,359,143	+		GFF5376	0.40	-0.3
5,359,143	+		GFF5376	0.40	+0.1
5,359,144	+		GFF5376	0.40	+0.4
5,359,151	-		GFF5376	0.40	-1.6
5,359,158	-		GFF5376	0.41	-0.1
5,359,158	-		GFF5376	0.41	+0.3
5,359,162	-		GFF5376	0.41	-1.4
5,359,163	-		GFF5376	0.41	+0.5
5,359,185	-		GFF5376	0.43	+0.9
5,359,185	-		GFF5376	0.43	+0.0
5,359,191	-		GFF5376	0.43	+2.3
5,359,192	+		GFF5376	0.43	-1.1
5,359,192	+		GFF5376	0.43	+0.2
5,359,192	+		GFF5376	0.43	-0.5
5,359,192	+		GFF5376	0.43	+1.2
5,359,192	+		GFF5376	0.43	-0.1
5,359,192	+		GFF5376	0.43	+0.8
5,359,197	+		GFF5376	0.43	+0.8
5,359,197	+		GFF5376	0.43	+1.4
5,359,202	+		GFF5376	0.44	-0.8
5,359,202	+		GFF5376	0.44	-0.7
5,359,202	+		GFF5376	0.44	-2.0
5,359,202	+		GFF5376	0.44	+1.4
5,359,202	+		GFF5376	0.44	+0.3
5,359,202	+		GFF5376	0.44	+0.1
5,359,205	-		GFF5376	0.44	-0.0
5,359,205	-		GFF5376	0.44	-0.2
5,359,205	-		GFF5376	0.44	-0.0
5,359,205	-		GFF5376	0.44	-1.4
5,359,205	-		GFF5376	0.44	+0.1
5,359,205	-		GFF5376	0.44	+0.5
5,359,205	-		GFF5376	0.44	-0.1
5,359,207	+		GFF5376	0.44	+0.2
5,359,210	-		GFF5376	0.44	+1.0
5,359,210	-		GFF5376	0.44	-2.1
5,359,210	-		GFF5376	0.44	-2.0
5,359,210	-		GFF5376	0.44	-0.2
5,359,215	-		GFF5376	0.45	-2.2
5,359,215	-		GFF5376	0.45	-2.0
5,359,234	-		GFF5376	0.46	+0.7
5,359,234	-		GFF5376	0.46	-0.4
5,359,239	-		GFF5376	0.46	+0.0
5,359,248	+		GFF5376	0.47	+0.4
5,359,254	+		GFF5376	0.47	+1.1
5,359,261	-		GFF5376	0.48	-0.2
5,359,262	-		GFF5376	0.48	+0.7
5,359,291	+		GFF5376	0.50	-0.9
5,359,291	+		GFF5376	0.50	-0.8
5,359,291	-		GFF5376	0.50	+0.1
5,359,300	+		GFF5376	0.51	+0.1
5,359,306	+		GFF5376	0.51	+0.0
5,359,314	-		GFF5376	0.52	-0.1
5,359,319	-		GFF5376	0.52	-0.3
5,359,322	+		GFF5376	0.52	-1.3
5,359,322	+		GFF5376	0.52	-1.6
5,359,324	-		GFF5376	0.52	-1.6
5,359,327	+		GFF5376	0.53	+0.1
5,359,327	-		GFF5376	0.53	+0.3
5,359,336	-		GFF5376	0.53	-1.2
5,359,341	-		GFF5376	0.54	-2.5
5,359,352	+		GFF5376	0.54	-0.1
5,359,355	+		GFF5376	0.55	-1.4
5,359,355	+		GFF5376	0.55	-0.9
5,359,360	+		GFF5376	0.55	-0.7
5,359,360	-		GFF5376	0.55	-0.6
5,359,361	-		GFF5376	0.55	-0.4
5,359,363	-		GFF5376	0.55	-0.5
5,359,369	+		GFF5376	0.56	-0.1
5,359,369	+		GFF5376	0.56	-0.2
5,359,369	+		GFF5376	0.56	-0.1
5,359,369	+		GFF5376	0.56	+0.2
5,359,369	+		GFF5376	0.56	+0.1
5,359,377	-		GFF5376	0.56	-1.6
5,359,377	-		GFF5376	0.56	-2.8
5,359,377	-		GFF5376	0.56	-0.4
5,359,377	-		GFF5376	0.56	+0.7
5,359,377	-		GFF5376	0.56	+1.1
5,359,377	-		GFF5376	0.56	+0.8
5,359,377	-		GFF5376	0.56	+0.6
5,359,377	-		GFF5376	0.56	-1.2
5,359,379	+		GFF5376	0.56	-0.3
5,359,394	+		GFF5376	0.57	+0.7
5,359,419	-		GFF5376	0.59	+0.1
5,359,419	-		GFF5376	0.59	+1.0
5,359,419	-		GFF5376	0.59	-0.4
5,359,429	-		GFF5376	0.60	-2.7
5,359,429	-		GFF5376	0.60	+0.2
5,359,431	+		GFF5376	0.60	+0.2
5,359,432	+		GFF5376	0.60	+0.9
5,359,439	+		GFF5376	0.60	+0.0
5,359,440	-		GFF5376	0.61	+0.8
5,359,440	-		GFF5376	0.61	-1.2
5,359,443	+		GFF5376	0.61	+0.8
5,359,444	+		GFF5376	0.61	-0.5
5,359,447	-		GFF5376	0.61	-0.7
5,359,447	-		GFF5376	0.61	-0.8
5,359,447	-		GFF5376	0.61	-0.8
5,359,447	-		GFF5376	0.61	-0.8
5,359,447	-		GFF5376	0.61	-0.8
5,359,449	+		GFF5376	0.61	+0.5
5,359,454	+		GFF5376	0.62	-0.3
5,359,457	-		GFF5376	0.62	+0.5
5,359,462	-		GFF5376	0.62	-0.3
5,359,463	+		GFF5376	0.62	+0.2
5,359,469	+		GFF5376	0.63	+0.4
5,359,473	-		GFF5376	0.63	-1.0
5,359,477	-		GFF5376	0.63	-1.6
5,359,477	-		GFF5376	0.63	+0.4
5,359,477	-		GFF5376	0.63	-0.8
5,359,477	-		GFF5376	0.63	-3.1
5,359,479	+		GFF5376	0.63	-0.8
5,359,484	+		GFF5376	0.64	+0.5
5,359,484	+		GFF5376	0.64	-0.2
5,359,489	+		GFF5376	0.64	-1.0
5,359,503	-		GFF5376	0.65	-1.9
5,359,505	-		GFF5376	0.65	-1.0
5,359,513	-		GFF5376	0.66	-0.4
5,359,524	+		GFF5376	0.66	-2.6
5,359,524	+		GFF5376	0.66	+0.2
5,359,524	+		GFF5376	0.66	-0.3
5,359,526	+		GFF5376	0.67	-0.3
5,359,526	+		GFF5376	0.67	+0.0
5,359,526	+		GFF5376	0.67	-0.6
5,359,531	+		GFF5376	0.67	+1.4
5,359,531	+		GFF5376	0.67	+0.5
5,359,531	+		GFF5376	0.67	+0.2
5,359,532	-		GFF5376	0.67	-0.2
5,359,532	-		GFF5376	0.67	+0.9
5,359,532	-		GFF5376	0.67	+1.2
5,359,536	+		GFF5376	0.67	-1.6
5,359,536	+		GFF5376	0.67	+0.2
5,359,536	+		GFF5376	0.67	+0.0
5,359,539	-		GFF5376	0.68	-1.6
5,359,544	-		GFF5376	0.68	-1.9
5,359,549	+		GFF5376	0.68	-0.8
5,359,549	+		GFF5376	0.68	-1.1
5,359,552	-		GFF5376	0.68	-0.5
5,359,557	+		GFF5376	0.69	+0.5
5,359,557	-		GFF5376	0.69	+0.7
5,359,557	-		GFF5376	0.69	-2.0
5,359,557	-		GFF5376	0.69	-0.4
5,359,559	-		GFF5376	0.69	-1.1
5,359,559	-		GFF5376	0.69	-0.3
5,359,560	-		GFF5376	0.69	-0.1
5,359,569	+		GFF5376	0.70	-1.1
5,359,573	+		GFF5376	0.70	+0.0
5,359,582	-		GFF5376	0.71	-0.4
5,359,582	-		GFF5376	0.71	-0.7
5,359,582	-		GFF5376	0.71	-0.3
5,359,596	+		GFF5376	0.72	-0.0
5,359,596	+		GFF5376	0.72	+0.4
5,359,597	-		GFF5376	0.72	-0.4
5,359,597	-		GFF5376	0.72	-1.6
5,359,604	-		GFF5376	0.72	-1.3
5,359,604	-		GFF5376	0.72	-2.2
5,359,604	-		GFF5376	0.72	-0.8
5,359,604	-		GFF5376	0.72	+1.1
5,359,620	+		GFF5376	0.73	-0.9
5,359,620	+		GFF5376	0.73	-0.8
5,359,620	+		GFF5376	0.73	-0.8
5,359,622	+		GFF5376	0.73	-0.3
5,359,622	+		GFF5376	0.73	+0.4
5,359,623	-		GFF5376	0.73	-1.0
5,359,638	+		GFF5376	0.74	+0.4
5,359,643	-		GFF5376	0.75	+0.3
5,359,646	-		GFF5376	0.75	-1.4
5,359,648	+		GFF5376	0.75	-0.6
5,359,677	-		GFF5376	0.77	-1.7
5,359,682	+		GFF5376	0.78	-1.4
5,359,689	+		GFF5376	0.78	-1.1
5,359,689	+		GFF5376	0.78	-0.5
5,359,693	+		GFF5376	0.78	-0.4
5,359,694	+		GFF5376	0.78	-0.9
5,359,694	+		GFF5376	0.78	-0.2
5,359,694	+		GFF5376	0.78	-0.4
5,359,694	+		GFF5376	0.78	+0.7
5,359,694	+		GFF5376	0.78	+0.2
5,359,694	+		GFF5376	0.78	-0.9
5,359,694	+		GFF5376	0.78	-1.8
5,359,697	-		GFF5376	0.79	+0.6
5,359,697	-		GFF5376	0.79	-0.1
5,359,697	-		GFF5376	0.79	+0.5
5,359,699	+		GFF5376	0.79	-1.1
5,359,699	+		GFF5376	0.79	-1.0
5,359,701	-		GFF5376	0.79	-1.0
5,359,701	-		GFF5376	0.79	-0.4
5,359,702	-		GFF5376	0.79	-1.9
5,359,702	-		GFF5376	0.79	-0.8
5,359,702	-		GFF5376	0.79	-1.2
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