Strain Fitness in Sphingobium sp. HT1-2 around GFF5373

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,355,721	-		GFF5372	0.59	-0.5
5,355,754	+		GFF5372	0.61	-2.4
5,355,762	-		GFF5372	0.61	+0.4
5,355,762	-		GFF5372	0.61	+0.8
5,355,778	+		GFF5372	0.62	+0.8
5,355,799	+		GFF5372	0.63	-0.3
5,355,799	+		GFF5372	0.63	+0.6
5,355,807	-		GFF5372	0.63	-0.3
5,355,807	-		GFF5372	0.63	+0.0
5,355,809	-		GFF5372	0.63	+0.8
5,355,814	+		GFF5372	0.64	-0.8
5,355,839	-		GFF5372	0.65	-1.5
5,355,839	-		GFF5372	0.65	-0.0
5,355,853	+		GFF5372	0.66	+0.1
5,355,859	+		GFF5372	0.66	-1.2
5,355,861	+		GFF5372	0.66	-1.6
5,355,861	+		GFF5372	0.66	-1.1
5,355,861	-		GFF5372	0.66	-1.0
5,355,861	-		GFF5372	0.66	-1.9
5,355,892	+		GFF5372	0.68	-0.8
5,355,892	+		GFF5372	0.68	+0.5
5,355,899	+		GFF5372	0.68	-0.2
5,355,921	+		GFF5372	0.69	+0.1
5,355,926	+		GFF5372	0.70	+1.2
5,355,945	+		GFF5372	0.71	+0.4
5,355,945	+		GFF5372	0.71	+1.0
5,355,953	+		GFF5372	0.71	-0.2
5,355,953	+		GFF5372	0.71	-0.6
5,355,953	-		GFF5372	0.71	+0.5
5,355,961	-		GFF5372	0.72	-0.3
5,355,961	-		GFF5372	0.72	-0.4
5,355,976	+		GFF5372	0.72	-0.3
5,355,976	+		GFF5372	0.72	+0.8
5,355,984	-		GFF5372	0.73	-2.5
5,355,996	+		GFF5372	0.73	-0.7
5,356,035	+		GFF5372	0.75	-0.3
5,356,042	+		GFF5372	0.76	-0.4
5,356,042	+		GFF5372	0.76	+0.2
5,356,042	+		GFF5372	0.76	-0.5
5,356,042	+		GFF5372	0.76	-0.8
5,356,042	+		GFF5372	0.76	-0.1
5,356,042	+		GFF5372	0.76	-0.7
5,356,042	+		GFF5372	0.76	-0.4
5,356,042	+		GFF5372	0.76	-2.4
5,356,044	+		GFF5372	0.76	+1.1
5,356,050	-		GFF5372	0.76	-0.4
5,356,050	-		GFF5372	0.76	-0.1
5,356,052	-		GFF5372	0.76	-2.1
5,356,059	+		GFF5372	0.77	-1.3
5,356,062	+		GFF5372	0.77	+0.4
5,356,062	+		GFF5372	0.77	-1.6
5,356,067	+		GFF5372	0.77	-1.0
5,356,067	+		GFF5372	0.77	+1.1
5,356,067	+		GFF5372	0.77	+0.4
5,356,067	+		GFF5372	0.77	-0.6
5,356,070	-		GFF5372	0.77	+1.3
5,356,070	-		GFF5372	0.77	-0.7
5,356,072	+		GFF5372	0.77	-0.1
5,356,072	+		GFF5372	0.77	+1.4
5,356,072	+		GFF5372	0.77	-2.0
5,356,072	+		GFF5372	0.77	+0.1
5,356,074	+		GFF5372	0.78	-2.0
5,356,074	+		GFF5372	0.78	-0.2
5,356,075	-		GFF5372	0.78	+1.0
5,356,075	-		GFF5372	0.78	+0.1
5,356,077	-		GFF5372	0.78	+0.7
5,356,080	-		GFF5372	0.78	+0.4
5,356,080	-		GFF5372	0.78	+0.4
5,356,080	-		GFF5372	0.78	+0.2
5,356,112	+		GFF5372	0.80	+0.4
5,356,112	-		GFF5372	0.80	-0.8
5,356,117	-		GFF5372	0.80	-0.2
5,356,132	+		GFF5372	0.81	+0.2
5,356,148	-		GFF5372	0.81	-1.9
5,356,169	-		GFF5372	0.83	-2.2
5,356,179	-		GFF5372	0.83	-0.6
5,356,184	-		GFF5372	0.83	+0.7
5,356,219	+		GFF5372	0.85	+0.1
5,356,227	-		GFF5372	0.86	+1.6
5,356,229	-		GFF5372	0.86	-0.4
5,356,234	+		GFF5372	0.86	+0.7
5,356,236	+		GFF5372	0.86	+0.1
5,356,244	-		GFF5372	0.87	+0.4
5,356,260	+		GFF5372	0.87	+0.1
5,356,260	+		GFF5372	0.87	+0.8
5,356,260	+		GFF5372	0.87	-0.9
5,356,268	-		GFF5372	0.88	+0.0
5,356,299	+		GFF5372	0.89	+0.4
5,356,328	+				+0.3
5,356,345	+				+0.7
5,356,345	+				-0.4
5,356,345	+				-0.8
5,356,348	-				-0.7
5,356,428	-				+0.7
5,356,429	-				+1.1
5,356,486	+				-0.5
5,356,486	+				+0.6
5,356,494	-				+0.0
5,356,566	+				-0.6
5,356,616	-				+0.5
5,356,624	-				-1.7
5,356,629	-				+0.0
5,356,640	-				-1.4
5,356,644	-				+0.4
5,356,689	-				-0.2
5,356,763	+		GFF5373	0.11	-0.5
5,356,791	+		GFF5373	0.18	-1.1
5,356,792	+		GFF5373	0.19	-0.8
5,356,808	-		GFF5373	0.23	+0.3
5,356,840	-		GFF5373	0.31	-0.5
5,356,847	-		GFF5373	0.33	-0.8
5,356,865	+		GFF5373	0.37	+0.6
5,356,872	+		GFF5373	0.39	+0.7
5,356,872	+		GFF5373	0.39	-1.0
5,356,936	+		GFF5373	0.55	+0.2
5,356,936	+		GFF5373	0.55	+0.7
5,356,944	-		GFF5373	0.57	-1.4
5,356,946	+		GFF5373	0.58	-0.9
5,356,951	+		GFF5373	0.59	+0.7
5,356,951	+		GFF5373	0.59	+1.0
5,356,953	+		GFF5373	0.60	+0.1
5,356,959	-		GFF5373	0.61	-1.2
5,356,961	-		GFF5373	0.62	-0.8
5,356,962	+		GFF5373	0.62	+0.6
5,356,962	+		GFF5373	0.62	+1.2
5,356,962	+		GFF5373	0.62	+0.8
5,356,962	+		GFF5373	0.62	+0.3
5,356,962	+		GFF5373	0.62	-1.6
5,356,970	-		GFF5373	0.64	-1.7
5,356,970	-		GFF5373	0.64	-0.5
5,356,970	-		GFF5373	0.64	-1.1
5,356,971	-		GFF5373	0.64	-0.6
5,357,021	+		GFF5373	0.77	+0.3
5,357,021	+		GFF5373	0.77	+0.1
5,357,026	+		GFF5373	0.78	-1.8
5,357,038	+		GFF5373	0.81	-0.2
5,357,070	-		GFF5373	0.89	-0.1
5,357,097	-				-1.1
5,357,136	+				+1.5
5,357,155	+				+0.9
5,357,165	+				-0.4
5,357,165	+				+0.0
5,357,170	+				+1.0
5,357,182	+				+0.9
5,357,182	+				-0.4
5,357,182	+				-0.1
5,357,182	-				-0.3
5,357,190	-				-0.1
5,357,190	-				-0.4
5,357,190	-				+0.2
5,357,190	-				+0.9
5,357,206	+				+0.8
5,357,209	-				-1.1
5,357,222	+				-0.4
5,357,223	-				-2.3
5,357,228	-				-2.4
5,357,229	-				-0.6
5,357,254	+				-0.2
5,357,254	+				-0.4
5,357,267	-				+0.6
5,357,294	-				-1.0
5,357,301	-				+1.1
5,357,309	-		GFF5374	0.12	-0.7
5,357,309	-		GFF5374	0.12	+0.9
5,357,309	-		GFF5374	0.12	+0.7
5,357,320	-		GFF5374	0.15	-0.1
5,357,369	-		GFF5374	0.32	+0.3
5,357,400	+		GFF5374	0.43	-0.0
5,357,400	+		GFF5374	0.43	+0.6
5,357,400	+		GFF5374	0.43	+0.4
5,357,400	+		GFF5374	0.43	-1.2
5,357,400	+		GFF5374	0.43	+0.0
5,357,400	+		GFF5374	0.43	-0.9
5,357,400	+		GFF5374	0.43	-0.6
5,357,400	+		GFF5374	0.43	+0.2
5,357,400	+		GFF5374	0.43	+1.5
5,357,400	+		GFF5374	0.43	-1.6
5,357,400	+		GFF5374	0.43	+0.2
5,357,408	-		GFF5374	0.45	-0.2
5,357,408	-		GFF5374	0.45	-0.3
5,357,408	-		GFF5374	0.45	+1.3
5,357,408	-		GFF5374	0.45	+0.7
5,357,408	-		GFF5374	0.45	-0.6
5,357,408	-		GFF5374	0.45	+0.6
5,357,408	-		GFF5374	0.45	+0.2
5,357,416	-		GFF5374	0.48	+0.3
5,357,427	+		GFF5374	0.52	-0.4
5,357,434	-		GFF5374	0.54	+0.4
5,357,435	-		GFF5374	0.54	-0.1
5,357,467	+		GFF5374	0.65	+0.4
5,357,467	+		GFF5374	0.65	+0.9
5,357,467	+		GFF5374	0.65	+0.1
5,357,469	+		GFF5374	0.66	-0.7
5,357,475	-		GFF5374	0.68	+0.0
5,357,475	-		GFF5374	0.68	-1.7
5,357,475	-		GFF5374	0.68	-0.0
5,357,480	-		GFF5374	0.70	+0.4
5,357,504	+		GFF5374	0.78	-0.5
5,357,504	+		GFF5374	0.78	+0.1
5,357,504	+		GFF5374	0.78	-0.4
5,357,504	+		GFF5374	0.78	+0.5
5,357,504	+		GFF5374	0.78	+0.1
5,357,512	-		GFF5374	0.81	+0.1
5,357,512	-		GFF5374	0.81	+1.7
5,357,512	-		GFF5374	0.81	+0.8
5,357,512	-		GFF5374	0.81	-0.7
5,357,516	+		GFF5374	0.82	+1.1
5,357,516	+		GFF5374	0.82	-1.1
5,357,552	+				-0.8
5,357,580	+				+0.0
5,357,596	+		GFF5375	0.11	-1.1
5,357,759	-		GFF5375	0.72	+0.7
5,357,936	+				-0.5
5,357,937	-				-0.2
5,357,944	-				+0.1
5,357,953	+				+0.7
5,357,975	-				+0.2
5,357,975	-				-0.6
5,357,997	+				+0.4
5,357,997	+				+1.4
5,357,997	+				-0.4
5,357,997	+				+0.2
5,358,005	-				-0.6
5,358,005	-				+0.2
5,358,005	-				-0.6
5,358,005	-				+0.4
5,358,005	-				+0.4
5,358,005	-				-0.1
5,358,005	-				-1.2
5,358,005	-				-0.3
5,358,014	+				-0.5
5,358,032	-				-0.6
5,358,034	+				+0.5
5,358,040	+				+0.0
5,358,040	+				-0.6
5,358,040	+				-1.8
5,358,045	+				+0.0
5,358,050	+				+0.1
5,358,057	+				-2.5
5,358,059	-				+0.3
5,358,068	-				-2.7
5,358,109	+				-0.1