Strain Fitness in Sphingobium sp. HT1-2 around GFF5362

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,347,003	+		GFF5360	0.88	-1.4
5,347,013	-		GFF5360	0.88	-1.0
5,347,034	-				-1.5
5,347,048	-				-1.9
5,347,054	+				-0.6
5,347,064	+				-0.5
5,347,072	-				-0.2
5,347,072	-				-1.1
5,347,076	+				-0.6
5,347,082	-				-0.2
5,347,090	-				+0.1
5,347,127	-				-1.0
5,347,182	+				+0.0
5,347,208	+				-0.5
5,347,225	-				+0.4
5,347,261	+				-0.1
5,347,323	-		GFF5361	0.17	-0.8
5,347,323	-		GFF5361	0.17	+1.2
5,347,356	-		GFF5361	0.22	-0.6
5,347,371	-		GFF5361	0.24	+0.8
5,347,377	+		GFF5361	0.24	-1.5
5,347,384	+		GFF5361	0.25	-0.2
5,347,384	+		GFF5361	0.25	+0.6
5,347,384	+		GFF5361	0.25	-0.0
5,347,385	-		GFF5361	0.25	-0.1
5,347,392	-		GFF5361	0.26	-0.7
5,347,425	+		GFF5361	0.30	-0.2
5,347,446	+		GFF5361	0.33	+1.4
5,347,446	+		GFF5361	0.33	+0.7
5,347,454	-		GFF5361	0.34	-0.1
5,347,454	-		GFF5361	0.34	+0.4
5,347,454	-		GFF5361	0.34	-0.4
5,347,461	-		GFF5361	0.35	-0.1
5,347,466	-		GFF5361	0.36	-1.0
5,347,543	+		GFF5361	0.45	-0.1
5,347,543	+		GFF5361	0.45	-0.2
5,347,550	+		GFF5361	0.46	+0.9
5,347,581	-		GFF5361	0.50	-1.6
5,347,599	-		GFF5361	0.53	-1.0
5,347,674	-		GFF5361	0.62	-1.1
5,347,697	-		GFF5361	0.65	+1.5
5,347,697	-		GFF5361	0.65	-0.1
5,347,702	-		GFF5361	0.66	-0.0
5,347,727	+		GFF5361	0.69	+0.1
5,347,735	-		GFF5361	0.70	+0.4
5,347,735	-		GFF5361	0.70	-0.3
5,347,735	-		GFF5361	0.70	-1.1
5,347,735	-		GFF5361	0.70	+0.2
5,347,735	-		GFF5361	0.70	+0.3
5,347,735	-		GFF5361	0.70	+0.1
5,347,735	-		GFF5361	0.70	-0.3
5,347,735	-		GFF5361	0.70	-2.1
5,347,735	-		GFF5361	0.70	-0.7
5,347,812	+		GFF5361	0.80	-2.2
5,347,856	+		GFF5361	0.85	+0.5
5,347,874	-		GFF5361	0.88	-0.6
5,347,911	+				+0.3
5,347,911	+				+0.2
5,347,924	-				-0.2
5,347,924	-				-0.6
5,347,962	+				+0.8
5,347,986	-				+1.3
5,348,021	+				-0.2
5,348,031	+				-0.2
5,348,046	-				-1.0
5,348,055	+				-0.7
5,348,057	+				+0.6
5,348,071	-				-0.2
5,348,072	+				-0.8
5,348,081	-				+0.7
5,348,082	+				-1.8
5,348,090	-				-0.2
5,348,183	-		GFF5362	0.13	+0.6
5,348,231	+		GFF5362	0.16	-1.2
5,348,276	-		GFF5362	0.19	-0.5
5,348,301	-		GFF5362	0.21	-0.8
5,348,320	-		GFF5362	0.22	+0.1
5,348,337	+		GFF5362	0.23	-0.6
5,348,337	+		GFF5362	0.23	-1.3
5,348,345	-		GFF5362	0.23	-0.5
5,348,385	+		GFF5362	0.26	-2.8
5,348,386	+		GFF5362	0.26	-1.1
5,348,394	-		GFF5362	0.26	-2.8
5,348,432	+		GFF5362	0.29	-0.2
5,348,474	-		GFF5362	0.32	-1.9
5,348,568	+		GFF5362	0.37	+0.0
5,348,570	+		GFF5362	0.38	-1.0
5,348,570	+		GFF5362	0.38	-1.6
5,348,615	+		GFF5362	0.40	-0.2
5,348,615	+		GFF5362	0.40	-0.7
5,348,639	+		GFF5362	0.42	-1.0
5,348,639	+		GFF5362	0.42	-2.4
5,348,639	+		GFF5362	0.42	-0.6
5,348,639	+		GFF5362	0.42	-0.9
5,348,647	-		GFF5362	0.42	-1.1
5,348,647	-		GFF5362	0.42	+0.4
5,348,647	-		GFF5362	0.42	-0.6
5,348,647	-		GFF5362	0.42	-1.5
5,348,647	-		GFF5362	0.42	+0.0
5,348,647	-		GFF5362	0.42	-0.1
5,348,654	+		GFF5362	0.43	-0.7
5,348,670	+		GFF5362	0.44	-2.9
5,348,741	+		GFF5362	0.48	-1.6
5,348,752	+		GFF5362	0.49	+0.7
5,348,760	+		GFF5362	0.50	-1.1
5,348,794	+		GFF5362	0.52	+0.1
5,348,797	+		GFF5362	0.52	-2.8
5,348,800	-		GFF5362	0.52	+0.4
5,348,803	-		GFF5362	0.52	-0.4
5,348,805	-		GFF5362	0.52	-0.7
5,348,863	+		GFF5362	0.56	-0.4
5,348,863	+		GFF5362	0.56	+1.9
5,348,863	+		GFF5362	0.56	+0.2
5,348,871	-		GFF5362	0.57	-0.6
5,348,871	-		GFF5362	0.57	-0.5
5,348,943	+		GFF5362	0.61	-1.5
5,348,943	+		GFF5362	0.61	-1.9
5,349,004	+		GFF5362	0.65	-1.8
5,349,008	+		GFF5362	0.65	-0.5
5,349,013	+		GFF5362	0.66	-0.7
5,349,016	-		GFF5362	0.66	-1.5
5,349,023	+		GFF5362	0.66	-0.3
5,349,026	-		GFF5362	0.66	-1.1
5,349,046	+		GFF5362	0.68	-1.5
5,349,052	-		GFF5362	0.68	-0.2
5,349,052	-		GFF5362	0.68	-1.5
5,349,054	-		GFF5362	0.68	-0.8
5,349,054	-		GFF5362	0.68	-1.2
5,349,114	+		GFF5362	0.72	+0.5
5,349,207	+		GFF5362	0.78	+0.8
5,349,207	+		GFF5362	0.78	+1.4
5,349,212	+		GFF5362	0.78	+0.7
5,349,236	+		GFF5362	0.80	-1.5
5,349,244	+		GFF5362	0.80	-1.1
5,349,244	-		GFF5362	0.80	-0.9
5,349,244	-		GFF5362	0.80	+0.1
5,349,244	-		GFF5362	0.80	+0.4
5,349,309	+		GFF5362	0.84	+0.2
5,349,325	-		GFF5362	0.85	-0.8
5,349,328	-		GFF5362	0.85	-1.2
5,349,328	-		GFF5362	0.85	+0.4
5,349,328	-		GFF5362	0.85	-1.2
5,349,379	+		GFF5362	0.89	-0.9
5,349,379	+		GFF5362	0.89	-0.6
5,349,379	+		GFF5362	0.89	+0.3
5,349,379	+		GFF5362	0.89	-0.1
5,349,387	-		GFF5362	0.89	+0.1
5,349,387	-		GFF5362	0.89	-0.4
5,349,387	-		GFF5362	0.89	-0.2
5,349,387	-		GFF5362	0.89	-0.9
5,349,387	-		GFF5362	0.89	-1.4
5,349,387	-		GFF5362	0.89	-0.3
5,349,409	-				-0.2
5,349,424	+				+0.2
5,349,432	-				-3.4
5,349,476	-				-0.6
5,349,478	-				+0.8
5,349,478	-				-0.1
5,349,540	-				-0.8
5,349,545	+				+0.2
5,349,574	-				-0.7
5,349,634	+				-0.8
5,349,688	+		GFF5363	0.22	-1.5
5,349,688	-		GFF5363	0.22	+1.6
5,349,725	-		GFF5363	0.31	+0.6
5,349,742	-		GFF5363	0.36	-1.3
5,349,764	+		GFF5363	0.41	-1.1
5,349,769	+		GFF5363	0.42	-1.1
5,349,769	+		GFF5363	0.42	-0.9
5,349,777	-		GFF5363	0.44	-1.6
5,349,777	-		GFF5363	0.44	+0.9
5,349,777	-		GFF5363	0.44	-1.6
5,349,793	-		GFF5363	0.48	-0.7
5,349,821	+		GFF5363	0.55	-0.7
5,349,829	-		GFF5363	0.57	-0.3
5,349,829	-		GFF5363	0.57	-1.2
5,349,831	+		GFF5363	0.57	+0.1
5,349,853	+		GFF5363	0.63	-1.0
5,349,861	-		GFF5363	0.64	+1.9
5,349,902	-		GFF5363	0.74	+0.1
5,349,902	-		GFF5363	0.74	+0.7
5,349,902	-		GFF5363	0.74	+1.1
5,349,912	-		GFF5363	0.77	+0.1
5,349,912	-		GFF5363	0.77	-0.1
5,349,923	-		GFF5363	0.80	+0.4
5,349,930	+		GFF5363	0.81	-0.1
5,349,931	+		GFF5363	0.82	-0.9
5,349,938	-		GFF5363	0.83	-1.0
5,349,938	-		GFF5363	0.83	+0.3
5,349,955	+		GFF5363	0.87	+0.7
5,349,955	+		GFF5363	0.87	+0.2
5,349,955	+		GFF5363	0.87	-0.3
5,349,963	-		GFF5363	0.89	-1.7
5,349,963	-		GFF5363	0.89	-1.1
5,349,963	-		GFF5363	0.89	-1.4
5,349,968	-				-1.0
5,349,998	+				-0.6
5,349,998	+				-0.8
5,350,058	-		GFF5364	0.27	-1.2
5,350,058	-		GFF5364	0.27	+0.2
5,350,058	-		GFF5364	0.27	-0.4
5,350,058	-		GFF5364	0.27	-1.0
5,350,078	+		GFF5364	0.36	-1.0
5,350,078	+		GFF5364	0.36	-1.0
5,350,078	+		GFF5364	0.36	-1.3
5,350,086	-		GFF5364	0.40	-1.1
5,350,086	-		GFF5364	0.40	-0.8
5,350,086	-		GFF5364	0.40	-0.0
5,350,086	-		GFF5364	0.40	-1.1
5,350,086	-		GFF5364	0.40	+1.0
5,350,106	+		GFF5364	0.50	+0.2
5,350,128	+		GFF5364	0.60	-1.4
5,350,142	+		GFF5364	0.67	-0.1
5,350,153	+		GFF5364	0.72	+0.6
5,350,153	+		GFF5364	0.72	+0.4
5,350,168	+		GFF5364	0.80	-0.4
5,350,201	-				-0.3
5,350,248	+				+0.0
5,350,253	+				-0.3
5,350,266	-				+0.8
5,350,282	+		GFF5365	0.13	-0.2
5,350,289	+		GFF5365	0.14	-2.3
5,350,289	+		GFF5365	0.14	-0.4
5,350,290	-		GFF5365	0.14	-0.5
5,350,290	-		GFF5365	0.14	-2.1
5,350,320	+		GFF5365	0.21	-1.6
5,350,370	-		GFF5365	0.32	-1.5
5,350,383	+		GFF5365	0.35	-0.4
5,350,422	-		GFF5365	0.44	-0.1
5,350,462	-		GFF5365	0.53	-0.2
5,350,491	-		GFF5365	0.59	-0.6
5,350,496	+		GFF5365	0.60	+0.4
5,350,504	-		GFF5365	0.62	-0.5
5,350,524	-		GFF5365	0.67	-0.2
5,350,547	+		GFF5365	0.72	+0.4
5,350,555	-		GFF5365	0.74	+0.4
5,350,555	-		GFF5365	0.74	+0.4
5,350,555	-		GFF5365	0.74	-1.7
5,350,555	-		GFF5365	0.74	-1.2
5,350,555	-		GFF5365	0.74	+0.7