Strain Fitness in Sphingobium sp. HT1-2 around GFF5299

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,289,324	+				+0.8
5,289,332	-				+0.2
5,289,332	-				-0.9
5,289,332	-				-2.6
5,289,343	+				-1.3
5,289,343	+				-0.2
5,289,369	+				+0.6
5,289,369	+				-1.7
5,289,369	+				+0.3
5,289,369	+				+0.6
5,289,369	+				+0.3
5,289,369	+				+0.4
5,289,377	-				+1.0
5,289,377	-				-1.4
5,289,377	-				-1.4
5,289,384	+				-2.3
5,289,384	+				+0.8
5,289,384	+				+0.6
5,289,388	+				-0.0
5,289,426	-		GFF5298	0.13	-1.1
5,289,435	+		GFF5298	0.14	-1.6
5,289,435	+		GFF5298	0.14	-1.0
5,289,435	+		GFF5298	0.14	+1.1
5,289,435	+		GFF5298	0.14	-0.8
5,289,437	-		GFF5298	0.14	-0.1
5,289,443	-		GFF5298	0.15	-1.3
5,289,445	-		GFF5298	0.15	-0.9
5,289,479	+		GFF5298	0.18	-2.0
5,289,481	-		GFF5298	0.19	-0.6
5,289,487	-		GFF5298	0.19	+0.4
5,289,512	+		GFF5298	0.21	+0.0
5,289,570	+		GFF5298	0.27	-1.0
5,289,570	+		GFF5298	0.27	-0.1
5,289,570	+		GFF5298	0.27	-0.3
5,289,575	+		GFF5298	0.27	-0.8
5,289,578	-		GFF5298	0.28	+0.6
5,289,587	-		GFF5298	0.29	-3.2
5,289,594	+		GFF5298	0.29	-0.8
5,289,597	-		GFF5298	0.30	-1.4
5,289,597	-		GFF5298	0.30	-1.6
5,289,602	-		GFF5298	0.30	-1.1
5,289,612	+		GFF5298	0.31	-3.3
5,289,612	+		GFF5298	0.31	-0.7
5,289,628	+		GFF5298	0.32	+0.2
5,289,634	+		GFF5298	0.33	+0.6
5,289,642	-		GFF5298	0.34	+0.6
5,289,642	-		GFF5298	0.34	-0.3
5,289,642	-		GFF5298	0.34	+0.0
5,289,642	-		GFF5298	0.34	-1.3
5,289,652	+		GFF5298	0.35	-1.3
5,289,697	+		GFF5298	0.39	+0.0
5,289,750	+		GFF5298	0.44	-0.7
5,289,758	-		GFF5298	0.45	-0.1
5,289,761	+		GFF5298	0.45	-0.6
5,289,822	+		GFF5298	0.51	-0.2
5,289,827	+		GFF5298	0.51	-0.8
5,289,830	-		GFF5298	0.52	+0.6
5,289,830	-		GFF5298	0.52	-0.6
5,289,835	-		GFF5298	0.52	-0.8
5,289,837	-		GFF5298	0.52	-1.5
5,289,849	+		GFF5298	0.53	-1.6
5,289,858	-		GFF5298	0.54	-0.4
5,289,891	+		GFF5298	0.57	-1.2
5,289,902	+		GFF5298	0.58	-0.7
5,289,902	+		GFF5298	0.58	-1.6
5,289,902	+		GFF5298	0.58	-0.4
5,289,902	+		GFF5298	0.58	-0.1
5,289,902	+		GFF5298	0.58	+0.8
5,289,902	+		GFF5298	0.58	+0.2
5,289,902	+		GFF5298	0.58	+0.1
5,289,910	-		GFF5298	0.59	-0.1
5,289,910	-		GFF5298	0.59	+0.9
5,289,910	-		GFF5298	0.59	-0.7
5,289,910	-		GFF5298	0.59	-0.8
5,289,926	-		GFF5298	0.61	-0.0
5,289,946	+		GFF5298	0.63	+0.7
5,289,946	+		GFF5298	0.63	-0.5
5,289,958	-		GFF5298	0.64	-0.4
5,289,972	+		GFF5298	0.65	-0.8
5,289,981	-		GFF5298	0.66	-0.7
5,290,014	+		GFF5298	0.69	-0.8
5,290,020	+		GFF5298	0.70	-0.3
5,290,020	+		GFF5298	0.70	-0.1
5,290,020	+		GFF5298	0.70	-1.0
5,290,020	+		GFF5298	0.70	+0.7
5,290,020	+		GFF5298	0.70	-1.8
5,290,020	+		GFF5298	0.70	-0.3
5,290,020	+		GFF5298	0.70	-0.5
5,290,020	+		GFF5298	0.70	-0.4
5,290,020	+		GFF5298	0.70	-0.7
5,290,020	+		GFF5298	0.70	-0.9
5,290,020	+		GFF5298	0.70	-1.2
5,290,020	+		GFF5298	0.70	-0.4
5,290,020	+		GFF5298	0.70	-1.6
5,290,020	+		GFF5298	0.70	-0.6
5,290,020	+		GFF5298	0.70	-0.3
5,290,020	+		GFF5298	0.70	-0.0
5,290,020	+		GFF5298	0.70	-1.2
5,290,020	+		GFF5298	0.70	-0.1
5,290,020	+		GFF5298	0.70	+0.3
5,290,020	+		GFF5298	0.70	-2.3
5,290,020	+		GFF5298	0.70	+0.4
5,290,020	+		GFF5298	0.70	-0.4
5,290,020	+		GFF5298	0.70	-1.2
5,290,020	+		GFF5298	0.70	+0.8
5,290,020	+		GFF5298	0.70	-2.2
5,290,020	+		GFF5298	0.70	-1.1
5,290,020	+		GFF5298	0.70	-0.4
5,290,020	+		GFF5298	0.70	-0.8
5,290,020	+		GFF5298	0.70	-1.0
5,290,020	+		GFF5298	0.70	+0.6
5,290,020	+		GFF5298	0.70	+0.1
5,290,025	+		GFF5298	0.70	+0.7
5,290,025	+		GFF5298	0.70	+0.0
5,290,028	+		GFF5298	0.70	-1.1
5,290,028	+		GFF5298	0.70	+0.1
5,290,028	-		GFF5298	0.70	-1.5
5,290,028	-		GFF5298	0.70	+0.6
5,290,028	-		GFF5298	0.70	+0.0
5,290,028	-		GFF5298	0.70	-0.5
5,290,028	-		GFF5298	0.70	+0.3
5,290,028	-		GFF5298	0.70	-2.5
5,290,028	-		GFF5298	0.70	-0.2
5,290,028	-		GFF5298	0.70	-0.5
5,290,028	-		GFF5298	0.70	-1.4
5,290,028	-		GFF5298	0.70	-1.2
5,290,028	-		GFF5298	0.70	-0.8
5,290,028	-		GFF5298	0.70	-0.3
5,290,028	-		GFF5298	0.70	+1.7
5,290,028	-		GFF5298	0.70	-0.3
5,290,028	-		GFF5298	0.70	-1.1
5,290,028	-		GFF5298	0.70	-0.1
5,290,028	-		GFF5298	0.70	-0.8
5,290,028	-		GFF5298	0.70	-1.2
5,290,028	-		GFF5298	0.70	-0.4
5,290,028	-		GFF5298	0.70	-1.8
5,290,028	-		GFF5298	0.70	-0.8
5,290,030	+		GFF5298	0.71	-2.4
5,290,033	-		GFF5298	0.71	+0.3
5,290,036	-		GFF5298	0.71	-0.2
5,290,037	+		GFF5298	0.71	-0.4
5,290,038	-		GFF5298	0.71	+0.3
5,290,048	-		GFF5298	0.72	-0.1
5,290,051	+		GFF5298	0.73	+0.6
5,290,053	-		GFF5298	0.73	-2.4
5,290,077	+		GFF5298	0.75	-0.6
5,290,088	-		GFF5298	0.76	+1.2
5,290,090	-		GFF5298	0.76	+1.0
5,290,095	-		GFF5298	0.77	-1.7
5,290,097	+		GFF5298	0.77	-1.6
5,290,097	+		GFF5298	0.77	-1.3
5,290,097	+		GFF5298	0.77	-0.2
5,290,097	+		GFF5298	0.77	+0.2
5,290,105	-		GFF5298	0.78	-2.4
5,290,105	-		GFF5298	0.78	-2.4
5,290,105	-		GFF5298	0.78	-1.4
5,290,105	-		GFF5298	0.78	-0.0
5,290,129	-		GFF5298	0.80	-1.0
5,290,131	+		GFF5298	0.80	-1.8
5,290,131	+		GFF5298	0.80	-0.7
5,290,131	+		GFF5298	0.80	+0.5
5,290,135	-		GFF5298	0.81	-1.2
5,290,139	-		GFF5298	0.81	-1.8
5,290,144	-		GFF5298	0.81	-0.0
5,290,151	+		GFF5298	0.82	-1.3
5,290,151	+		GFF5298	0.82	-0.6
5,290,151	+		GFF5298	0.82	-0.1
5,290,151	+		GFF5298	0.82	+0.2
5,290,151	+		GFF5298	0.82	-0.9
5,290,151	+		GFF5298	0.82	-2.7
5,290,151	+		GFF5298	0.82	-0.5
5,290,151	+		GFF5298	0.82	-1.4
5,290,159	-		GFF5298	0.83	-0.7
5,290,159	-		GFF5298	0.83	-0.4
5,290,159	-		GFF5298	0.83	-1.3
5,290,161	+		GFF5298	0.83	-0.7
5,290,169	-		GFF5298	0.84	-0.1
5,290,176	+		GFF5298	0.85	-1.0
5,290,195	+		GFF5298	0.86	-1.0
5,290,195	+		GFF5298	0.86	+0.1
5,290,195	+		GFF5298	0.86	-0.6
5,290,195	+		GFF5298	0.86	-1.1
5,290,197	+		GFF5298	0.87	-0.5
5,290,199	+		GFF5298	0.87	-2.1
5,290,199	+		GFF5298	0.87	+0.2
5,290,201	-		GFF5298	0.87	-0.5
5,290,203	-		GFF5298	0.87	-1.1
5,290,207	+		GFF5298	0.87	+1.4
5,290,225	-		GFF5298	0.89	-0.1
5,290,225	-		GFF5298	0.89	+0.3
5,290,227	+		GFF5298	0.89	-1.1
5,290,227	+		GFF5298	0.89	+0.2
5,290,235	-				+0.1
5,290,243	-				-0.4
5,290,243	-				-2.3
5,290,246	-				+0.7
5,290,246	-				-0.1
5,290,251	-				-2.0
5,290,300	+				-2.4
5,290,309	+				-0.3
5,290,317	-				+0.1
5,290,317	-				+0.4
5,290,326	+				+0.2
5,290,339	+				-1.4
5,290,344	+				-0.6
5,290,347	-				-1.9
5,290,352	-				-0.5
5,290,352	-				-0.5
5,290,354	+				-1.7
5,290,362	-				-0.2
5,290,370	+				-0.8
5,290,370	+				-0.1
5,290,378	-				-0.9
5,290,378	-				+0.4
5,290,398	+				-0.4
5,290,472	+		GFF5299	0.15	+0.6
5,290,477	+		GFF5299	0.16	-0.5
5,290,477	+		GFF5299	0.16	+0.1
5,290,478	+		GFF5299	0.16	-1.1
5,290,485	-		GFF5299	0.17	-1.9
5,290,486	-		GFF5299	0.17	-0.5
5,290,486	-		GFF5299	0.17	-2.6
5,290,486	-		GFF5299	0.17	+1.3
5,290,499	+		GFF5299	0.18	-1.6
5,290,500	+		GFF5299	0.18	-1.6
5,290,500	+		GFF5299	0.18	-1.6
5,290,504	+		GFF5299	0.19	-1.5
5,290,508	-		GFF5299	0.19	-0.2
5,290,508	-		GFF5299	0.19	-2.7
5,290,557	+		GFF5299	0.24	-0.8
5,290,589	+		GFF5299	0.27	-1.1
5,290,612	+		GFF5299	0.30	-0.6
5,290,625	+		GFF5299	0.31	-0.8
5,290,625	+		GFF5299	0.31	+0.2
5,290,630	+		GFF5299	0.32	+0.6
5,290,631	+		GFF5299	0.32	-0.3
5,290,631	+		GFF5299	0.32	-0.8
5,290,634	-		GFF5299	0.32	-0.3
5,290,639	-		GFF5299	0.33	-1.2
5,290,639	-		GFF5299	0.33	-2.3
5,290,639	-		GFF5299	0.33	-1.2
5,290,640	-		GFF5299	0.33	-0.2
5,290,647	+		GFF5299	0.33	-1.4
5,290,650	+		GFF5299	0.34	-0.6
5,290,653	-		GFF5299	0.34	+0.0
5,290,658	-		GFF5299	0.35	-1.5
5,290,658	-		GFF5299	0.35	+0.6
5,290,658	-		GFF5299	0.35	+0.2
5,290,664	+		GFF5299	0.35	+0.8
5,290,664	+		GFF5299	0.35	-1.1
5,290,664	+		GFF5299	0.35	-1.1
5,290,664	+		GFF5299	0.35	-0.6
5,290,664	+		GFF5299	0.35	-2.3
5,290,664	+		GFF5299	0.35	-1.4
5,290,664	+		GFF5299	0.35	-0.9
5,290,664	+		GFF5299	0.35	+0.8
5,290,664	+		GFF5299	0.35	-1.8
5,290,664	+		GFF5299	0.35	-1.9
5,290,664	+		GFF5299	0.35	+0.8
5,290,672	-		GFF5299	0.36	-0.2
5,290,672	-		GFF5299	0.36	-0.8
5,290,672	-		GFF5299	0.36	-3.0
5,290,685	+		GFF5299	0.37	+0.6
5,290,689	-		GFF5299	0.38	-1.0
5,290,695	+		GFF5299	0.38	-1.8
5,290,704	+		GFF5299	0.39	+0.1
5,290,704	+		GFF5299	0.39	+0.3
5,290,714	+		GFF5299	0.40	+0.6
5,290,747	-		GFF5299	0.44	+0.3
5,290,757	-		GFF5299	0.45	-1.8
5,290,762	-		GFF5299	0.45	-0.6
5,290,806	+		GFF5299	0.50	+0.4
5,290,807	+		GFF5299	0.50	-1.7
5,290,807	+		GFF5299	0.50	-2.8
5,290,810	+		GFF5299	0.50	-0.9
5,290,814	-		GFF5299	0.51	-0.2
5,290,815	-		GFF5299	0.51	+1.0
5,290,825	+		GFF5299	0.52	-0.8
5,290,830	+		GFF5299	0.52	-0.4
5,290,833	-		GFF5299	0.53	+0.2
5,290,845	-		GFF5299	0.54	+0.4
5,290,847	+		GFF5299	0.54	-1.0
5,290,847	+		GFF5299	0.54	-0.9
5,290,847	+		GFF5299	0.54	-0.3
5,290,847	+		GFF5299	0.54	-1.5
5,290,855	-		GFF5299	0.55	-0.4
5,290,855	-		GFF5299	0.55	-0.3
5,290,855	-		GFF5299	0.55	-2.7
5,290,867	+		GFF5299	0.56	+1.0
5,290,875	-		GFF5299	0.57	-1.5
5,290,875	-		GFF5299	0.57	-0.8
5,290,875	-		GFF5299	0.57	-2.0
5,290,875	-		GFF5299	0.57	-0.8
5,290,885	-		GFF5299	0.58	+1.3
5,290,887	+		GFF5299	0.58	-1.2
5,290,888	+		GFF5299	0.58	-0.6
5,290,888	+		GFF5299	0.58	-3.4
5,290,888	+		GFF5299	0.58	-0.8
5,290,890	-		GFF5299	0.58	-2.1
5,290,891	-		GFF5299	0.59	-0.2
5,290,896	-		GFF5299	0.59	-0.3
5,290,900	+		GFF5299	0.59	-0.5
5,290,918	+		GFF5299	0.61	-0.8
5,290,937	+		GFF5299	0.63	-3.0
5,290,937	+		GFF5299	0.63	-3.1
5,290,937	+		GFF5299	0.63	-0.7
5,290,937	+		GFF5299	0.63	+0.6
5,290,942	+		GFF5299	0.64	-1.6
5,290,942	+		GFF5299	0.64	-1.2
5,290,942	+		GFF5299	0.64	-0.1
5,290,942	+		GFF5299	0.64	-0.9
5,290,945	-		GFF5299	0.64	-2.3
5,290,945	-		GFF5299	0.64	+0.3
5,290,950	+		GFF5299	0.65	+0.4
5,290,950	-		GFF5299	0.65	-0.8
5,290,950	-		GFF5299	0.65	-0.9
5,290,950	-		GFF5299	0.65	-1.8
5,290,989	+		GFF5299	0.69	-0.1
5,290,989	+		GFF5299	0.69	-2.2
5,290,989	+		GFF5299	0.69	+0.5
5,290,989	+		GFF5299	0.69	-0.1
5,290,989	+		GFF5299	0.69	-0.6
5,290,989	+		GFF5299	0.69	-0.3
5,290,997	-		GFF5299	0.69	-1.3
5,290,997	-		GFF5299	0.69	-0.7
5,290,997	-		GFF5299	0.69	-0.5
5,291,009	+		GFF5299	0.71	-0.5
5,291,010	+		GFF5299	0.71	+0.7
5,291,010	+		GFF5299	0.71	-0.7
5,291,019	+		GFF5299	0.72	-0.6
5,291,034	+		GFF5299	0.73	-3.1
5,291,045	+		GFF5299	0.74	-0.8
5,291,053	+		GFF5299	0.75	-0.5
5,291,053	-		GFF5299	0.75	-2.9
5,291,053	-		GFF5299	0.75	-0.9
5,291,055	+		GFF5299	0.75	-0.2
5,291,061	-		GFF5299	0.76	-2.1
5,291,085	+		GFF5299	0.78	+0.7
5,291,096	-		GFF5299	0.80	-0.3
5,291,096	-		GFF5299	0.80	-1.3
5,291,101	-		GFF5299	0.80	-0.2
5,291,145	-		GFF5299	0.85	-0.3
5,291,162	+		GFF5299	0.86	+0.7
5,291,172	+		GFF5299	0.87	-1.7
5,291,176	+		GFF5299	0.88	-1.0
5,291,176	+		GFF5299	0.88	+1.0
5,291,176	+		GFF5299	0.88	-1.0
5,291,180	-		GFF5299	0.88	+0.3
5,291,190	+		GFF5299	0.89	-2.1
5,291,191	+		GFF5299	0.89	+1.0
5,291,197	+				+0.2
5,291,197	+				+0.5
5,291,197	+				-0.9
5,291,197	+				-1.3
5,291,197	+				+0.6
5,291,197	+				-1.3
5,291,205	-				-2.9
5,291,205	-				-0.6
5,291,205	-				-1.6
5,291,205	-				-1.4
5,291,205	-				+0.8
5,291,205	-				+0.9
5,291,219	+				-0.7
5,291,219	+				-0.9
5,291,222	-				+0.3
5,291,224	+				-0.3
5,291,227	-				+0.1
5,291,244	-				+0.8
5,291,246	+				-0.7
5,291,246	+				-1.5
5,291,254	-				-0.3
5,291,259	-				-1.2
5,291,261	-				-1.8
5,291,263	+				-1.2
5,291,275	+				+0.2
5,291,275	+				+0.4
5,291,275	+				-0.8
5,291,292	+				-0.9
5,291,292	+				+0.2
5,291,314	+				-0.7
5,291,781	+		GFF5300	0.38	+0.1