Strain Fitness in Sphingobium sp. HT1-2 around GFF5293

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,280,793	-		GFF5291	0.60	-2.9
5,280,807	-		GFF5291	0.62	+0.1
5,280,873	-		GFF5291	0.70	-1.6
5,280,887	+		GFF5291	0.72	+0.3
5,280,913	+		GFF5291	0.75	+0.0
5,280,921	-		GFF5291	0.76	-2.4
5,280,921	-		GFF5291	0.76	+1.1
5,280,930	+		GFF5291	0.78	+0.0
5,280,930	+		GFF5291	0.78	+1.4
5,280,938	-		GFF5291	0.79	+0.2
5,280,938	-		GFF5291	0.79	-1.9
5,280,938	-		GFF5291	0.79	-0.9
5,280,938	-		GFF5291	0.79	-0.1
5,280,938	-		GFF5291	0.79	-0.2
5,280,938	-		GFF5291	0.79	-0.4
5,280,948	+		GFF5291	0.80	+0.8
5,280,948	+		GFF5291	0.80	-0.3
5,280,956	+		GFF5291	0.81	-0.3
5,280,956	+		GFF5291	0.81	-0.2
5,280,992	+		GFF5291	0.85	-1.7
5,280,999	+		GFF5291	0.86	-0.8
5,280,999	+		GFF5291	0.86	-0.2
5,280,999	+		GFF5291	0.86	-0.6
5,281,001	-		GFF5291	0.87	+0.5
5,281,007	-		GFF5291	0.87	-0.9
5,281,010	+		GFF5291	0.88	-0.1
5,281,017	-		GFF5291	0.89	-2.6
5,281,017	-		GFF5291	0.89	+0.3
5,281,030	+				+0.4
5,281,038	-				-2.1
5,281,043	+				-0.9
5,281,043	+				+0.5
5,281,043	+				+0.2
5,281,043	+				-1.8
5,281,043	+				+0.6
5,281,043	+				-0.6
5,281,043	+				-1.1
5,281,043	+				-1.4
5,281,043	+				-0.4
5,281,051	-				+0.5
5,281,051	-				-0.7
5,281,051	-				-0.5
5,281,061	-				+0.1
5,281,062	+				-0.2
5,281,062	+				-0.1
5,281,062	+				-0.1
5,281,062	+				-1.1
5,281,062	+				-1.0
5,281,062	+				-2.7
5,281,065	-				-1.2
5,281,070	-				-1.4
5,281,070	-				+0.6
5,281,075	-				-0.7
5,281,075	-				-0.5
5,281,075	-				-0.5
5,281,080	-				-1.2
5,281,111	+				-1.1
5,281,118	+				-2.1
5,281,118	+				-0.6
5,281,118	+				-1.1
5,281,118	+				+0.3
5,281,118	+				-2.6
5,281,118	+				-1.4
5,281,118	+				-0.6
5,281,118	+				-1.5
5,281,118	+				+0.2
5,281,118	+				+0.1
5,281,118	+				+0.2
5,281,118	+				-2.1
5,281,118	+				+0.6
5,281,118	+				+0.4
5,281,118	+				-2.0
5,281,118	+				+0.2
5,281,118	+				-0.2
5,281,118	+				+0.2
5,281,118	+				+0.2
5,281,118	+				+0.5
5,281,118	+				-0.4
5,281,118	+				-0.2
5,281,118	+				-0.5
5,281,118	+				+1.1
5,281,118	+				-2.3
5,281,119	-				-0.8
5,281,119	-				-1.2
5,281,126	-				+0.5
5,281,126	-				-1.6
5,281,126	-				+0.1
5,281,126	-				+0.1
5,281,126	-				-1.0
5,281,126	-				+1.2
5,281,126	-				+0.7
5,281,126	-				-0.8
5,281,126	-				-0.0
5,281,126	-				-0.2
5,281,126	-				+0.6
5,281,126	-				-0.8
5,281,126	-				-0.6
5,281,126	-				+0.2
5,281,126	-				-0.1
5,281,128	-				-0.1
5,281,131	-				-1.0
5,281,131	-				-1.2
5,281,150	-				+1.2
5,281,150	-				-0.2
5,281,170	+		GFF5292	0.12	-0.5
5,281,170	+		GFF5292	0.12	-0.5
5,281,170	-		GFF5292	0.12	+0.0
5,281,178	-		GFF5292	0.14	+0.5
5,281,198	+		GFF5292	0.17	-0.3
5,281,219	+		GFF5292	0.21	+0.5
5,281,219	+		GFF5292	0.21	+1.6
5,281,219	+		GFF5292	0.21	-0.8
5,281,219	+		GFF5292	0.21	-0.8
5,281,219	+		GFF5292	0.21	-0.7
5,281,219	+		GFF5292	0.21	+1.2
5,281,219	+		GFF5292	0.21	-0.9
5,281,222	+		GFF5292	0.22	-1.6
5,281,227	-		GFF5292	0.23	-0.4
5,281,227	-		GFF5292	0.23	+0.2
5,281,227	-		GFF5292	0.23	+0.1
5,281,241	+		GFF5292	0.25	-0.8
5,281,244	+		GFF5292	0.26	-0.1
5,281,249	-		GFF5292	0.27	-0.8
5,281,265	+		GFF5292	0.30	-0.4
5,281,265	+		GFF5292	0.30	-0.3
5,281,265	+		GFF5292	0.30	-0.5
5,281,265	+		GFF5292	0.30	+0.5
5,281,265	+		GFF5292	0.30	-0.6
5,281,273	-		GFF5292	0.31	-0.8
5,281,273	-		GFF5292	0.31	-0.6
5,281,273	-		GFF5292	0.31	+0.2
5,281,275	-		GFF5292	0.31	-0.6
5,281,285	-		GFF5292	0.33	-0.8
5,281,299	+		GFF5292	0.36	-0.2
5,281,299	+		GFF5292	0.36	-0.9
5,281,302	-		GFF5292	0.36	+0.9
5,281,302	-		GFF5292	0.36	+0.0
5,281,302	-		GFF5292	0.36	-1.1
5,281,302	-		GFF5292	0.36	-0.8
5,281,302	-		GFF5292	0.36	+1.7
5,281,304	+		GFF5292	0.37	+0.8
5,281,304	+		GFF5292	0.37	+0.5
5,281,304	+		GFF5292	0.37	+0.1
5,281,307	-		GFF5292	0.37	+0.7
5,281,310	+		GFF5292	0.38	+1.2
5,281,318	-		GFF5292	0.39	-1.3
5,281,341	+		GFF5292	0.43	-2.1
5,281,341	+		GFF5292	0.43	+1.4
5,281,347	-		GFF5292	0.44	-1.3
5,281,349	-		GFF5292	0.45	-1.3
5,281,359	-		GFF5292	0.47	-1.9
5,281,364	-		GFF5292	0.47	-1.4
5,281,371	-		GFF5292	0.49	-1.0
5,281,387	+		GFF5292	0.52	+0.5
5,281,400	+		GFF5292	0.54	+0.2
5,281,400	-		GFF5292	0.54	-0.6
5,281,474	-		GFF5292	0.67	+0.7
5,281,513	+		GFF5292	0.74	-1.2
5,281,513	+		GFF5292	0.74	-1.1
5,281,513	+		GFF5292	0.74	-2.6
5,281,517	+		GFF5292	0.75	-0.5
5,281,521	-		GFF5292	0.76	-0.8
5,281,521	-		GFF5292	0.76	+0.2
5,281,521	-		GFF5292	0.76	-0.5
5,281,521	-		GFF5292	0.76	-0.2
5,281,521	-		GFF5292	0.76	-0.3
5,281,526	-		GFF5292	0.77	-0.8
5,281,526	-		GFF5292	0.77	-0.0
5,281,526	-		GFF5292	0.77	-0.9
5,281,526	-		GFF5292	0.77	+0.9
5,281,535	-		GFF5292	0.78	+1.2
5,281,575	+		GFF5292	0.86	+0.6
5,281,577	+		GFF5292	0.86	-0.3
5,281,588	-		GFF5292	0.88	-0.5
5,281,589	+		GFF5292	0.88	-2.5
5,281,598	-				-0.6
5,281,598	-				-0.2
5,281,600	-				-0.4
5,281,609	+				-1.0
5,281,614	+				+0.0
5,281,614	+				-0.8
5,281,622	+				-0.4
5,281,622	+				-0.4
5,281,630	-				+0.2
5,281,633	+				-1.1
5,281,637	+				-0.1
5,281,637	+				+0.2
5,281,645	-				+0.4
5,281,645	-				-0.4
5,281,650	-				-2.0
5,281,659	+				-0.0
5,281,667	-				-0.2
5,281,704	-				-0.4
5,281,715	+				-0.5
5,281,716	+				+1.1
5,281,723	-				+0.3
5,281,723	-				-1.1
5,281,723	-				+0.0
5,281,723	-				+0.8
5,281,723	-				-0.9
5,281,723	-				+0.1
5,281,723	-				-2.4
5,281,723	-				-0.3
5,281,723	-				-0.4
5,281,749	+				-1.5
5,281,757	-				-0.2
5,281,792	-				-0.1
5,281,823	-				-2.0
5,281,834	+				+0.2
5,281,842	-				-1.0
5,281,842	-				-1.0
5,281,842	-				+0.6
5,281,858	+				-0.1
5,281,873	+				-0.3
5,281,875	+				-0.2
5,281,875	+				-1.1
5,281,875	+				-0.4
5,281,875	+				-0.3
5,281,875	+				-0.3
5,281,880	+				+0.1
5,281,883	-				-1.7
5,281,883	-				+0.5
5,281,883	-				+0.2
5,281,883	-				-0.8
5,281,883	-				+0.8
5,281,883	-				-0.2
5,281,885	+				-0.3
5,281,885	+				-0.7
5,281,888	-				-1.6
5,281,893	-				-0.5
5,281,893	-				-0.0
5,281,893	-				-1.2
5,281,893	-				+1.8
5,281,926	+				+1.2
5,281,941	+				+0.8
5,281,941	+				-0.6
5,281,941	+				-0.5
5,281,960	+				-1.7
5,281,960	+				-0.4
5,281,966	+				-0.6
5,281,972	+				-0.8
5,281,972	+				-0.1
5,281,972	+				+0.6
5,281,974	-				-0.0
5,282,000	+				-0.2
5,282,008	-				-0.3
5,282,010	+				-0.5
5,282,012	+				+0.0
5,282,015	+				-1.4
5,282,015	+				-0.3
5,282,015	+				+0.2
5,282,020	+				-1.0
5,282,023	-				+0.2
5,282,028	-				+1.0
5,282,028	-				-1.3
5,282,046	-				-2.0
5,282,066	+				+1.6
5,282,074	-				-0.2
5,282,081	+				-0.8
5,282,086	+				-2.1
5,282,089	-		GFF5293	0.10	+0.8
5,282,089	-		GFF5293	0.10	-1.1
5,282,135	-		GFF5293	0.12	+0.2
5,282,143	+		GFF5293	0.12	+0.9
5,282,162	+		GFF5293	0.12	+0.4
5,282,191	+		GFF5293	0.13	-0.4
5,282,191	+		GFF5293	0.13	-1.7
5,282,191	+		GFF5293	0.13	-0.7
5,282,193	+		GFF5293	0.14	+0.8
5,282,193	+		GFF5293	0.14	+1.4
5,282,193	+		GFF5293	0.14	+0.3
5,282,193	+		GFF5293	0.14	-0.2
5,282,193	+		GFF5293	0.14	+0.4
5,282,193	+		GFF5293	0.14	-0.7
5,282,195	+		GFF5293	0.14	-0.9
5,282,197	+		GFF5293	0.14	-2.3
5,282,199	-		GFF5293	0.14	-0.6
5,282,201	-		GFF5293	0.14	-0.3
5,282,201	-		GFF5293	0.14	-0.3
5,282,201	-		GFF5293	0.14	+1.6
5,282,201	-		GFF5293	0.14	+0.1
5,282,201	-		GFF5293	0.14	-0.4
5,282,201	-		GFF5293	0.14	+0.3
5,282,203	-		GFF5293	0.14	+0.9
5,282,205	-		GFF5293	0.14	-2.3
5,282,212	+		GFF5293	0.14	+0.7
5,282,222	-		GFF5293	0.15	-0.6
5,282,262	-		GFF5293	0.16	-0.5
5,282,285	+		GFF5293	0.17	+0.8
5,282,285	+		GFF5293	0.17	-1.9
5,282,285	+		GFF5293	0.17	-0.4
5,282,285	+		GFF5293	0.17	-0.6
5,282,293	-		GFF5293	0.17	-0.6
5,282,293	-		GFF5293	0.17	+0.6
5,282,302	+		GFF5293	0.17	+0.4
5,282,322	+		GFF5293	0.18	-0.6
5,282,322	+		GFF5293	0.18	+0.8
5,282,322	+		GFF5293	0.18	-0.1
5,282,322	+		GFF5293	0.18	-0.7
5,282,322	+		GFF5293	0.18	-1.4
5,282,322	+		GFF5293	0.18	+0.1
5,282,322	+		GFF5293	0.18	-1.2
5,282,322	+		GFF5293	0.18	-0.5
5,282,330	-		GFF5293	0.18	+0.0
5,282,330	-		GFF5293	0.18	+0.1
5,282,330	-		GFF5293	0.18	-0.8
5,282,330	-		GFF5293	0.18	-0.2
5,282,330	-		GFF5293	0.18	-0.3
5,282,330	-		GFF5293	0.18	-0.7
5,282,330	-		GFF5293	0.18	-0.4
5,282,330	-		GFF5293	0.18	-0.8
5,282,332	+		GFF5293	0.18	-0.1
5,282,338	-		GFF5293	0.18	-0.3
5,282,350	+		GFF5293	0.19	-0.6
5,282,350	+		GFF5293	0.19	-1.8
5,282,350	+		GFF5293	0.19	-0.3
5,282,350	+		GFF5293	0.19	-1.3
5,282,351	+		GFF5293	0.19	+0.1
5,282,358	-		GFF5293	0.19	-0.6
5,282,358	-		GFF5293	0.19	+0.7
5,282,360	+		GFF5293	0.19	+0.9
5,282,368	-		GFF5293	0.19	-1.8
5,282,368	-		GFF5293	0.19	-0.1
5,282,393	+		GFF5293	0.20	-0.4
5,282,401	+		GFF5293	0.21	+0.1
5,282,409	-		GFF5293	0.21	+0.5
5,282,411	+		GFF5293	0.21	-0.0
5,282,419	-		GFF5293	0.21	-0.0
5,282,419	-		GFF5293	0.21	+0.6
5,282,440	+		GFF5293	0.22	+0.2
5,282,452	+		GFF5293	0.22	-2.0
5,282,467	-		GFF5293	0.23	-0.2
5,282,468	-		GFF5293	0.23	-0.3
5,282,478	-		GFF5293	0.23	+0.0
5,282,484	+		GFF5293	0.23	-0.4
5,282,484	+		GFF5293	0.23	+0.0
5,282,491	-		GFF5293	0.24	-0.0
5,282,491	-		GFF5293	0.24	-0.1
5,282,491	-		GFF5293	0.24	+0.4
5,282,491	-		GFF5293	0.24	-0.0
5,282,503	+		GFF5293	0.24	-0.4
5,282,507	+		GFF5293	0.24	+0.5
5,282,515	-		GFF5293	0.24	-0.1
5,282,515	-		GFF5293	0.24	-0.5
5,282,515	-		GFF5293	0.24	-2.1
5,282,520	-		GFF5293	0.25	+0.7
5,282,540	+		GFF5293	0.25	+0.2
5,282,566	-		GFF5293	0.26	+0.4
5,282,572	+		GFF5293	0.26	-1.1
5,282,572	+		GFF5293	0.26	-0.0
5,282,577	+		GFF5293	0.27	-1.3
5,282,577	-		GFF5293	0.27	-0.2
5,282,579	+		GFF5293	0.27	-0.5
5,282,579	+		GFF5293	0.27	+0.2
5,282,579	+		GFF5293	0.27	-1.9
5,282,579	+		GFF5293	0.27	+0.7
5,282,579	+		GFF5293	0.27	-2.1
5,282,579	+		GFF5293	0.27	-0.2
5,282,579	+		GFF5293	0.27	-0.1
5,282,579	+		GFF5293	0.27	+0.2
5,282,579	+		GFF5293	0.27	+0.2
5,282,579	+		GFF5293	0.27	-0.4
5,282,579	+		GFF5293	0.27	-1.0
5,282,582	-		GFF5293	0.27	-2.6
5,282,587	-		GFF5293	0.27	-0.9
5,282,587	-		GFF5293	0.27	-0.9
5,282,587	-		GFF5293	0.27	-0.2
5,282,587	-		GFF5293	0.27	+0.4
5,282,587	-		GFF5293	0.27	-2.0
5,282,587	-		GFF5293	0.27	+0.4
5,282,587	-		GFF5293	0.27	-0.4
5,282,604	-		GFF5293	0.27	-2.2
5,282,642	-		GFF5293	0.29	-0.8
5,282,645	-		GFF5293	0.29	+0.2
5,282,654	+		GFF5293	0.29	+0.2
5,282,654	+		GFF5293	0.29	-0.7
5,282,654	+		GFF5293	0.29	-1.7
5,282,657	-		GFF5293	0.29	-1.0
5,282,657	-		GFF5293	0.29	+0.2
5,282,657	-		GFF5293	0.29	+0.4
5,282,664	+		GFF5293	0.29	-0.2
5,282,664	+		GFF5293	0.29	+0.5
5,282,664	+		GFF5293	0.29	-0.3
5,282,670	+		GFF5293	0.30	+0.1
5,282,690	+		GFF5293	0.30	+0.3
5,282,690	+		GFF5293	0.30	-1.9
5,282,690	+		GFF5293	0.30	-0.1
5,282,690	+		GFF5293	0.30	-0.2
5,282,692	+		GFF5293	0.30	-0.2
5,282,692	+		GFF5293	0.30	+0.9
5,282,698	-		GFF5293	0.31	+0.3
5,282,698	-		GFF5293	0.31	-0.2
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5,283,201	-		GFF5293	0.48	-2.1
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5,283,419	-		GFF5293	0.55	-2.6
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5,283,420	-		GFF5293	0.55	-2.6
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5,283,464	-		GFF5293	0.56	-2.6
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5,283,578	-		GFF5293	0.60	-1.3
5,283,578	-		GFF5293	0.60	-0.8
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