Strain Fitness in Sphingobium sp. HT1-2 around GFF5240

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,234,433	-		GFF5239	0.51	-0.2
5,234,460	-		GFF5239	0.52	-0.1
5,234,462	+		GFF5239	0.53	+0.2
5,234,462	+		GFF5239	0.53	+0.1
5,234,462	+		GFF5239	0.53	-0.2
5,234,470	-		GFF5239	0.53	-1.7
5,234,483	+		GFF5239	0.54	+0.4
5,234,483	+		GFF5239	0.54	-0.4
5,234,491	-		GFF5239	0.54	-0.6
5,234,491	-		GFF5239	0.54	-0.8
5,234,493	+		GFF5239	0.54	+0.4
5,234,493	+		GFF5239	0.54	+0.8
5,234,493	+		GFF5239	0.54	-0.3
5,234,493	+		GFF5239	0.54	-0.3
5,234,493	+		GFF5239	0.54	+0.5
5,234,493	+		GFF5239	0.54	+0.6
5,234,493	+		GFF5239	0.54	-1.1
5,234,493	+		GFF5239	0.54	+0.1
5,234,493	+		GFF5239	0.54	-0.7
5,234,493	+		GFF5239	0.54	-0.8
5,234,493	+		GFF5239	0.54	-2.1
5,234,493	+		GFF5239	0.54	+0.5
5,234,501	-		GFF5239	0.55	-1.1
5,234,501	-		GFF5239	0.55	+0.1
5,234,501	-		GFF5239	0.55	-0.3
5,234,501	-		GFF5239	0.55	-0.7
5,234,501	-		GFF5239	0.55	+0.1
5,234,501	-		GFF5239	0.55	-1.1
5,234,501	-		GFF5239	0.55	+0.1
5,234,501	-		GFF5239	0.55	-1.1
5,234,501	-		GFF5239	0.55	-0.3
5,234,501	-		GFF5239	0.55	+1.4
5,234,501	-		GFF5239	0.55	-2.0
5,234,501	-		GFF5239	0.55	-0.1
5,234,501	-		GFF5239	0.55	-2.2
5,234,501	-		GFF5239	0.55	-0.6
5,234,501	-		GFF5239	0.55	-0.6
5,234,520	-		GFF5239	0.56	+1.1
5,234,529	-		GFF5239	0.56	-0.5
5,234,534	-		GFF5239	0.57	-0.1
5,234,590	+		GFF5239	0.60	+0.5
5,234,590	+		GFF5239	0.60	-0.7
5,234,598	-		GFF5239	0.60	+0.1
5,234,599	+		GFF5239	0.60	-0.4
5,234,603	-		GFF5239	0.61	-0.1
5,234,610	-		GFF5239	0.61	-1.7
5,234,612	+		GFF5239	0.61	+0.1
5,234,620	-		GFF5239	0.62	+1.2
5,234,622	+		GFF5239	0.62	+0.8
5,234,622	+		GFF5239	0.62	-1.7
5,234,625	-		GFF5239	0.62	+0.3
5,234,630	-		GFF5239	0.62	+0.1
5,234,636	+		GFF5239	0.62	-0.2
5,234,639	-		GFF5239	0.63	+0.3
5,234,665	-		GFF5239	0.64	-0.4
5,234,701	+		GFF5239	0.66	-0.2
5,234,709	-		GFF5239	0.67	+0.4
5,234,709	-		GFF5239	0.67	-0.2
5,234,733	+		GFF5239	0.68	-1.5
5,234,736	-		GFF5239	0.68	+0.8
5,234,738	+		GFF5239	0.68	-0.9
5,234,780	+		GFF5239	0.71	-1.1
5,234,812	-		GFF5239	0.73	+1.5
5,234,834	-		GFF5239	0.74	-1.7
5,234,852	+		GFF5239	0.75	+0.0
5,234,852	+		GFF5239	0.75	+0.7
5,234,895	-		GFF5239	0.77	-0.2
5,234,909	+		GFF5239	0.78	+0.1
5,234,909	+		GFF5239	0.78	-0.3
5,234,909	+		GFF5239	0.78	-0.6
5,234,909	+		GFF5239	0.78	-2.8
5,234,909	+		GFF5239	0.78	-0.1
5,234,917	-		GFF5239	0.79	-0.1
5,234,917	-		GFF5239	0.79	-0.7
5,234,917	-		GFF5239	0.79	+0.5
5,234,917	-		GFF5239	0.79	-0.2
5,234,938	+		GFF5239	0.80	-0.2
5,234,950	+		GFF5239	0.80	-1.0
5,234,950	+		GFF5239	0.80	+0.6
5,234,973	+		GFF5239	0.82	+0.9
5,234,983	+		GFF5239	0.82	-1.9
5,234,983	+		GFF5239	0.82	-0.5
5,235,014	+		GFF5239	0.84	-1.7
5,235,014	+		GFF5239	0.84	+0.0
5,235,023	-		GFF5239	0.85	+0.0
5,235,023	-		GFF5239	0.85	+0.2
5,235,037	+		GFF5239	0.85	+0.5
5,235,037	+		GFF5239	0.85	+0.2
5,235,052	-		GFF5239	0.86	+0.3
5,235,067	+		GFF5239	0.87	+0.9
5,235,085	+		GFF5239	0.88	-0.8
5,235,106	+		GFF5239	0.89	+0.6
5,235,119	+				+0.9
5,235,144	-				+1.2
5,235,160	+				-1.9
5,235,165	+				+0.4
5,235,165	+				-0.7
5,235,165	+				-0.1
5,235,168	-				-0.2
5,235,169	-				-0.9
5,235,169	-				-0.7
5,235,170	+				-2.3
5,235,173	-				+0.6
5,235,173	-				+0.3
5,235,173	-				-0.9
5,235,186	+				-0.4
5,235,186	+				-0.9
5,235,194	-				+0.4
5,235,196	+				+0.5
5,235,197	-				+0.5
5,235,199	-				-2.6
5,235,204	-				-0.7
5,235,204	-				+0.9
5,235,204	-				+1.2
5,235,207	+				+0.3
5,235,229	+				-0.2
5,235,243	+				-0.1
5,235,254	+				-0.3
5,235,262	-				-0.2
5,235,270	+				-0.3
5,235,274	+				+0.3
5,235,277	-				+1.8
5,235,283	-				-0.8
5,235,292	+				-0.0
5,235,293	+				-1.4
5,235,293	+				-0.7
5,235,310	-				-0.7
5,235,322	-				-1.1
5,235,335	+				+0.6
5,235,343	+				+0.4
5,235,348	+				-1.4
5,235,351	+				+0.3
5,235,359	-				+0.6
5,235,366	+				-1.3
5,235,389	+				+0.8
5,235,395	-				-0.1
5,235,402	+				-0.3
5,235,410	-				+0.2
5,235,410	-				+0.9
5,235,415	+				-0.3
5,235,418	-				-1.5
5,235,425	+				-0.2
5,235,425	+				-0.0
5,235,425	+				-0.7
5,235,433	-				-0.9
5,235,433	-				-0.5
5,235,445	-				+1.5
5,235,449	+				+0.3
5,235,449	+				-0.1
5,235,457	+				+0.4
5,235,463	-				-1.7
5,235,487	+		GFF5240	0.11	-1.7
5,235,496	+		GFF5240	0.12	+0.4
5,235,517	-		GFF5240	0.16	+0.6
5,235,527	-		GFF5240	0.17	+0.5
5,235,554	+		GFF5240	0.21	+0.5
5,235,554	+		GFF5240	0.21	-0.9
5,235,562	-		GFF5240	0.22	+0.2
5,235,562	-		GFF5240	0.22	-0.5
5,235,562	-		GFF5240	0.22	-0.7
5,235,566	+		GFF5240	0.23	+0.9
5,235,589	-		GFF5240	0.26	-0.1
5,235,590	+		GFF5240	0.26	-0.8
5,235,595	+		GFF5240	0.27	-0.5
5,235,595	+		GFF5240	0.27	-3.0
5,235,598	-		GFF5240	0.28	+0.3
5,235,650	+		GFF5240	0.35	+0.5
5,235,658	-		GFF5240	0.36	+0.4
5,235,663	-		GFF5240	0.37	+0.7
5,235,684	+		GFF5240	0.40	-0.5
5,235,684	+		GFF5240	0.40	+0.2
5,235,684	+		GFF5240	0.40	-0.9
5,235,684	+		GFF5240	0.40	-1.2
5,235,684	+		GFF5240	0.40	-0.9
5,235,684	+		GFF5240	0.40	-0.9
5,235,684	+		GFF5240	0.40	-0.2
5,235,684	+		GFF5240	0.40	-0.7
5,235,689	+		GFF5240	0.41	+1.5
5,235,689	+		GFF5240	0.41	-0.9
5,235,692	-		GFF5240	0.41	+0.1
5,235,692	-		GFF5240	0.41	-1.3
5,235,692	-		GFF5240	0.41	-1.7
5,235,692	-		GFF5240	0.41	+0.4
5,235,692	-		GFF5240	0.41	-0.8
5,235,692	-		GFF5240	0.41	+0.3
5,235,692	-		GFF5240	0.41	+0.3
5,235,692	-		GFF5240	0.41	-0.1
5,235,692	-		GFF5240	0.41	-1.5
5,235,692	-		GFF5240	0.41	-1.2
5,235,692	-		GFF5240	0.41	+1.1
5,235,697	-		GFF5240	0.42	-0.5
5,235,697	-		GFF5240	0.42	-2.7
5,235,697	-		GFF5240	0.42	-1.1
5,235,697	-		GFF5240	0.42	-1.2
5,235,697	-		GFF5240	0.42	-0.4
5,235,699	-		GFF5240	0.43	+0.2
5,235,730	+		GFF5240	0.47	-0.0
5,235,767	-		GFF5240	0.53	+1.1
5,235,781	+		GFF5240	0.55	-0.4
5,235,789	-		GFF5240	0.56	+0.3
5,235,789	-		GFF5240	0.56	-0.4
5,235,789	-		GFF5240	0.56	-1.7
5,235,796	+		GFF5240	0.57	-0.2
5,235,844	+		GFF5240	0.64	-0.3
5,235,849	+		GFF5240	0.65	-0.8
5,235,849	+		GFF5240	0.65	-1.1
5,235,849	+		GFF5240	0.65	-0.5
5,235,857	-		GFF5240	0.66	-0.4
5,235,857	-		GFF5240	0.66	+0.7
5,235,857	-		GFF5240	0.66	-0.7
5,235,877	-		GFF5240	0.69	+0.3
5,235,907	+		GFF5240	0.73	-1.2
5,235,913	+		GFF5240	0.74	-0.7
5,235,921	-		GFF5240	0.75	+0.5
5,235,946	+		GFF5240	0.79	+0.2
5,235,946	+		GFF5240	0.79	+1.0
5,235,946	+		GFF5240	0.79	-1.4
5,235,946	+		GFF5240	0.79	+0.2
5,235,954	-		GFF5240	0.80	+0.5
5,235,954	-		GFF5240	0.80	+0.8
5,235,954	-		GFF5240	0.80	+1.4
5,235,954	-		GFF5240	0.80	-0.6
5,235,959	-		GFF5240	0.81	-0.0
5,235,959	-		GFF5240	0.81	-0.9
5,235,988	+		GFF5240	0.85	-0.8
5,235,988	+		GFF5240	0.85	-0.3
5,236,022	+				-0.0
5,236,030	-				-1.3
5,236,050	-				-1.1
5,236,070	-				+0.0
5,236,130	+				-0.3
5,236,174	+				+0.4
5,236,179	-				-0.2
5,236,179	-				+0.6
5,236,188	-				-0.2
5,236,212	+				-1.0
5,236,250	+				-0.4
5,236,250	+				+0.4
5,236,250	+				-2.2
5,236,250	+				+0.3
5,236,254	-				-0.3
5,236,258	-				-0.2
5,236,258	-				-1.1
5,236,258	-				-0.4
5,236,261	-				-1.5
5,236,261	-				-0.6
5,236,263	+				+0.6
5,236,263	+				-1.8
5,236,274	+				-0.5
5,236,279	+				+0.3
5,236,282	-				-0.8
5,236,282	-				+0.8
5,236,282	-				-1.7
5,236,282	-				+0.4
5,236,310	-				-0.1
5,236,315	+				+0.6
5,236,323	-				-0.5
5,236,331	-				+0.3
5,236,331	-				-0.4
5,236,331	-				+0.6
5,236,338	-				-1.3
5,236,338	-				+0.5
5,236,364	-				+0.3
5,236,364	-				-1.5
5,236,366	+				+0.3
5,236,366	+				-0.4
5,236,366	+				-0.9
5,236,366	+				-1.2
5,236,366	-				-1.2
5,236,368	+				+0.6
5,236,374	-				-0.3
5,236,374	-				-0.1
5,236,423	+				-0.0
5,236,424	+				-0.7
5,236,432	-				-0.1
5,236,445	-				-0.1
5,236,450	+				-0.3
5,236,450	+				+1.1
5,236,456	+				-0.7
5,236,456	+				-1.4
5,236,456	+				+0.7
5,236,456	+				+1.0
5,236,463	+				-2.5
5,236,490	-				-0.5
5,236,492	-				-1.0
5,236,492	-				-1.0
5,236,553	+				-1.8
5,236,563	+				+0.2
5,236,607	+				-1.1
5,236,623	-				+1.1
5,236,651	+				-0.3
5,236,651	+				-0.7
5,236,651	+				-1.4
5,236,651	+				+1.4
5,236,651	+				-0.0
5,236,651	+				+0.5
5,236,651	+				-0.2
5,236,651	+				-1.0
5,236,651	+				+0.1
5,236,651	+				+1.1
5,236,651	+				-0.5
5,236,651	+				-1.6
5,236,651	+				+0.6
5,236,651	+				-0.2
5,236,651	+				-1.1
5,236,651	+				-1.3
5,236,651	+				-0.7
5,236,651	+				-2.2
5,236,651	+				+0.7
5,236,651	+				+0.4
5,236,651	+				+0.8
5,236,651	+				+0.9
5,236,651	+				-0.6
5,236,651	+				-0.1
5,236,651	+				+0.5
5,236,651	+				-0.0
5,236,659	-				-0.4
5,236,659	-				-1.9
5,236,659	-				-0.4
5,236,659	-				+0.9
5,236,659	-				-0.7
5,236,659	-				-1.0
5,236,659	-				+1.0
5,236,659	-				-0.0
5,236,659	-				-2.0
5,236,659	-				-1.0
5,236,659	-				+1.3
5,236,659	-				-1.0
5,236,659	-				-1.1
5,236,659	-				-1.4
5,236,695	+		GFF5241	0.14	+1.0
5,236,703	-		GFF5241	0.15	-2.4
5,236,708	-		GFF5241	0.16	-0.2
5,236,710	+		GFF5241	0.16	-1.0
5,236,743	+		GFF5241	0.22	-0.3
5,236,747	-		GFF5241	0.23	-1.4
5,236,754	-		GFF5241	0.24	-2.0
5,236,776	+		GFF5241	0.28	-1.8
5,236,787	-		GFF5241	0.30	-1.5
5,236,797	+		GFF5241	0.32	+0.2
5,236,871	+		GFF5241	0.45	+0.4
5,236,874	-		GFF5241	0.45	-1.0
5,236,879	-		GFF5241	0.46	-1.2
5,236,879	-		GFF5241	0.46	-1.9
5,236,879	-		GFF5241	0.46	-0.3
5,236,890	+		GFF5241	0.48	-0.2
5,236,913	+		GFF5241	0.52	+0.6
5,236,913	+		GFF5241	0.52	-1.0
5,236,921	-		GFF5241	0.53	+0.3
5,236,924	+		GFF5241	0.54	-1.9
5,236,930	+		GFF5241	0.55	-1.9
5,236,938	+		GFF5241	0.56	-0.5
5,236,938	-		GFF5241	0.56	+0.5
5,236,951	+		GFF5241	0.59	-1.3
5,236,971	-		GFF5241	0.62	-2.2
5,236,973	+		GFF5241	0.63	-0.4
5,236,973	+		GFF5241	0.63	-0.4
5,236,978	+		GFF5241	0.63	-1.0
5,236,978	+		GFF5241	0.63	-1.1
5,236,981	-		GFF5241	0.64	-0.6
5,236,983	+		GFF5241	0.64	-1.0
5,236,983	+		GFF5241	0.64	-0.0
5,236,983	+		GFF5241	0.64	-0.1
5,236,983	+		GFF5241	0.64	+0.1
5,236,983	+		GFF5241	0.64	-0.8
5,236,983	+		GFF5241	0.64	-1.0
5,236,983	+		GFF5241	0.64	-1.7
5,236,983	+		GFF5241	0.64	-0.9
5,236,986	-		GFF5241	0.65	-1.3
5,236,988	+		GFF5241	0.65	-0.3
5,236,991	-		GFF5241	0.66	+1.5
5,236,991	-		GFF5241	0.66	+0.4
5,236,991	-		GFF5241	0.66	+0.4
5,236,991	-		GFF5241	0.66	+0.0
5,236,991	-		GFF5241	0.66	+0.1
5,236,991	-		GFF5241	0.66	-0.8
5,236,991	-		GFF5241	0.66	+0.7
5,236,991	-		GFF5241	0.66	+0.1
5,236,991	-		GFF5241	0.66	-1.7
5,236,991	-		GFF5241	0.66	-2.4
5,236,991	-		GFF5241	0.66	-1.9
5,237,017	-		GFF5241	0.70	-0.8
5,237,021	+		GFF5241	0.71	-2.1
5,237,031	+		GFF5241	0.73	+0.6
5,237,031	+		GFF5241	0.73	-1.7
5,237,039	-		GFF5241	0.74	-2.2
5,237,039	-		GFF5241	0.74	-0.2
5,237,045	-		GFF5241	0.75	+0.2
5,237,054	+		GFF5241	0.77	-2.1