Strain Fitness in Sphingobium sp. HT1-2 around GFF5239

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,232,547	+		GFF5238	0.30	-0.6
5,232,547	+		GFF5238	0.30	+0.9
5,232,547	+		GFF5238	0.30	+0.1
5,232,555	-		GFF5238	0.31	+0.5
5,232,555	-		GFF5238	0.31	+0.4
5,232,555	-		GFF5238	0.31	-0.8
5,232,565	-		GFF5238	0.32	-0.1
5,232,592	+		GFF5238	0.34	-0.1
5,232,598	-		GFF5238	0.34	-0.1
5,232,599	-		GFF5238	0.34	+1.0
5,232,639	+		GFF5238	0.37	+0.4
5,232,639	+		GFF5238	0.37	+0.1
5,232,639	+		GFF5238	0.37	+0.2
5,232,647	-		GFF5238	0.37	-0.1
5,232,659	-		GFF5238	0.38	-0.6
5,232,700	-		GFF5238	0.41	-1.8
5,232,712	+		GFF5238	0.42	-0.3
5,232,712	+		GFF5238	0.42	+0.3
5,232,712	+		GFF5238	0.42	-0.3
5,232,712	+		GFF5238	0.42	-1.1
5,232,713	-		GFF5238	0.42	-0.9
5,232,713	-		GFF5238	0.42	-0.3
5,232,720	-		GFF5238	0.43	+0.5
5,232,733	-		GFF5238	0.44	+0.1
5,232,738	-		GFF5238	0.44	-0.8
5,232,740	+		GFF5238	0.44	-0.8
5,232,740	+		GFF5238	0.44	-1.4
5,232,745	+		GFF5238	0.44	+0.1
5,232,745	+		GFF5238	0.44	+0.7
5,232,745	+		GFF5238	0.44	+0.7
5,232,748	-		GFF5238	0.45	+0.2
5,232,751	-		GFF5238	0.45	+0.7
5,232,753	-		GFF5238	0.45	+1.1
5,232,753	-		GFF5238	0.45	-0.7
5,232,765	-		GFF5238	0.46	+0.5
5,232,765	-		GFF5238	0.46	-0.1
5,232,765	-		GFF5238	0.46	+1.0
5,232,765	-		GFF5238	0.46	-0.7
5,232,766	-		GFF5238	0.46	+0.2
5,232,766	-		GFF5238	0.46	-0.1
5,232,790	-		GFF5238	0.48	+1.5
5,232,800	-		GFF5238	0.48	+0.5
5,232,810	-		GFF5238	0.49	-1.2
5,232,818	-		GFF5238	0.49	+1.2
5,232,818	-		GFF5238	0.49	-0.5
5,232,825	+		GFF5238	0.50	-0.2
5,232,882	-		GFF5238	0.54	-0.3
5,232,883	-		GFF5238	0.54	-1.0
5,232,891	+		GFF5238	0.55	+0.4
5,232,891	+		GFF5238	0.55	+0.5
5,232,891	+		GFF5238	0.55	-0.8
5,232,899	-		GFF5238	0.55	+0.1
5,232,899	-		GFF5238	0.55	-0.5
5,232,899	-		GFF5238	0.55	-0.2
5,232,899	-		GFF5238	0.55	-0.4
5,232,899	-		GFF5238	0.55	-0.1
5,232,899	-		GFF5238	0.55	+0.4
5,232,899	-		GFF5238	0.55	-0.3
5,232,917	-		GFF5238	0.56	-2.3
5,232,919	+		GFF5238	0.57	+0.2
5,232,946	-		GFF5238	0.58	-0.6
5,232,948	+		GFF5238	0.59	-1.8
5,232,965	+		GFF5238	0.60	+0.5
5,232,991	-		GFF5238	0.62	+0.0
5,233,100	-		GFF5238	0.69	-2.3
5,233,118	+		GFF5238	0.71	-2.7
5,233,126	-		GFF5238	0.71	+0.5
5,233,127	-		GFF5238	0.71	-0.5
5,233,127	-		GFF5238	0.71	-0.4
5,233,131	-		GFF5238	0.71	+0.9
5,233,132	-		GFF5238	0.72	-1.2
5,233,132	-		GFF5238	0.72	+0.5
5,233,132	-		GFF5238	0.72	+1.2
5,233,141	+		GFF5238	0.72	-1.2
5,233,164	-		GFF5238	0.74	-0.5
5,233,164	-		GFF5238	0.74	-2.3
5,233,202	+		GFF5238	0.76	-2.8
5,233,210	-		GFF5238	0.77	+0.4
5,233,217	+		GFF5238	0.77	+0.4
5,233,251	-		GFF5238	0.80	-1.0
5,233,263	+		GFF5238	0.81	+0.4
5,233,271	-		GFF5238	0.81	-0.1
5,233,273	+		GFF5238	0.81	+0.5
5,233,273	+		GFF5238	0.81	+0.1
5,233,281	-		GFF5238	0.82	-0.6
5,233,281	-		GFF5238	0.82	+1.8
5,233,296	-		GFF5238	0.83	-0.6
5,233,298	+		GFF5238	0.83	+0.4
5,233,298	+		GFF5238	0.83	+0.0
5,233,302	-		GFF5238	0.83	-2.3
5,233,328	-		GFF5238	0.85	+0.5
5,233,333	-		GFF5238	0.86	-0.5
5,233,345	-		GFF5238	0.86	-1.5
5,233,349	-		GFF5238	0.87	-0.9
5,233,352	+		GFF5238	0.87	+0.0
5,233,360	-		GFF5238	0.88	+0.2
5,233,360	-		GFF5238	0.88	-0.7
5,233,400	-				+0.0
5,233,438	+				+0.2
5,233,489	-				-0.3
5,233,525	+				-0.9
5,233,530	-				-1.8
5,233,530	-				-0.8
5,233,530	-				+0.5
5,233,530	-				-0.6
5,233,530	-				+0.3
5,233,532	+				+1.4
5,233,532	+				+0.3
5,233,535	-				+0.1
5,233,539	+				+0.5
5,233,540	-				-0.6
5,233,547	-				-1.6
5,233,547	-				-1.7
5,233,547	-				-0.1
5,233,549	+				+0.7
5,233,549	+				-0.1
5,233,557	-				-1.3
5,233,557	-				-1.2
5,233,559	+				-1.5
5,233,567	+				+0.3
5,233,567	+				-1.5
5,233,577	-				+0.8
5,233,577	-				-0.3
5,233,592	-				+1.1
5,233,592	-				+0.4
5,233,607	+				-0.0
5,233,625	-				+1.0
5,233,630	+				-0.2
5,233,638	-				+0.2
5,233,673	-				-0.0
5,233,716	-				-0.1
5,233,720	+		GFF5239	0.10	-0.7
5,233,726	-		GFF5239	0.11	+0.6
5,233,728	-		GFF5239	0.11	+0.0
5,233,742	+		GFF5239	0.11	+0.6
5,233,760	-		GFF5239	0.12	-0.3
5,233,760	-		GFF5239	0.12	+0.4
5,233,773	-		GFF5239	0.13	+0.6
5,233,774	-		GFF5239	0.13	-1.1
5,233,780	-		GFF5239	0.14	+1.0
5,233,834	-		GFF5239	0.17	-1.2
5,233,834	-		GFF5239	0.17	+0.7
5,233,854	-		GFF5239	0.18	+1.0
5,233,863	+		GFF5239	0.18	+0.0
5,233,873	+		GFF5239	0.19	+0.9
5,233,876	-		GFF5239	0.19	-0.6
5,233,888	+		GFF5239	0.20	-0.1
5,233,929	-		GFF5239	0.22	+1.4
5,233,940	-		GFF5239	0.23	+0.6
5,233,943	+		GFF5239	0.23	-0.5
5,233,951	-		GFF5239	0.23	-0.3
5,233,970	-		GFF5239	0.24	-1.7
5,233,980	-		GFF5239	0.25	+0.7
5,233,994	+		GFF5239	0.26	+1.1
5,233,999	+		GFF5239	0.26	-0.7
5,233,999	+		GFF5239	0.26	+0.4
5,233,999	+		GFF5239	0.26	-0.4
5,233,999	+		GFF5239	0.26	-2.1
5,233,999	+		GFF5239	0.26	+1.1
5,233,999	+		GFF5239	0.26	+1.1
5,234,007	-		GFF5239	0.27	-0.4
5,234,015	+		GFF5239	0.27	-2.5
5,234,016	+		GFF5239	0.27	+1.1
5,234,016	+		GFF5239	0.27	-0.1
5,234,016	+		GFF5239	0.27	-2.4
5,234,016	+		GFF5239	0.27	+0.9
5,234,016	+		GFF5239	0.27	-0.4
5,234,023	-		GFF5239	0.28	-0.1
5,234,023	-		GFF5239	0.28	-0.1
5,234,024	-		GFF5239	0.28	-1.3
5,234,024	-		GFF5239	0.28	+0.1
5,234,029	-		GFF5239	0.28	-1.0
5,234,086	+		GFF5239	0.31	+0.2
5,234,145	+		GFF5239	0.34	-0.4
5,234,174	-		GFF5239	0.36	-1.7
5,234,189	-		GFF5239	0.37	-1.2
5,234,205	+		GFF5239	0.38	-0.1
5,234,263	-		GFF5239	0.41	-0.7
5,234,263	-		GFF5239	0.41	+1.7
5,234,280	-		GFF5239	0.42	+0.2
5,234,280	-		GFF5239	0.42	+0.3
5,234,280	-		GFF5239	0.42	+0.5
5,234,280	-		GFF5239	0.42	-0.0
5,234,280	-		GFF5239	0.42	-1.2
5,234,280	-		GFF5239	0.42	-1.9
5,234,299	-		GFF5239	0.43	+1.8
5,234,327	+		GFF5239	0.45	-0.3
5,234,349	+		GFF5239	0.46	+2.1
5,234,349	+		GFF5239	0.46	+0.3
5,234,349	+		GFF5239	0.46	-2.6
5,234,349	-		GFF5239	0.46	+1.4
5,234,353	+		GFF5239	0.46	-0.1
5,234,357	-		GFF5239	0.47	+0.6
5,234,433	-		GFF5239	0.51	-0.2
5,234,460	-		GFF5239	0.52	-0.1
5,234,462	+		GFF5239	0.53	+0.2
5,234,462	+		GFF5239	0.53	+0.1
5,234,462	+		GFF5239	0.53	-0.2
5,234,470	-		GFF5239	0.53	-1.7
5,234,483	+		GFF5239	0.54	+0.4
5,234,483	+		GFF5239	0.54	-0.4
5,234,491	-		GFF5239	0.54	-0.6
5,234,491	-		GFF5239	0.54	-0.8
5,234,493	+		GFF5239	0.54	+0.4
5,234,493	+		GFF5239	0.54	+0.8
5,234,493	+		GFF5239	0.54	-0.3
5,234,493	+		GFF5239	0.54	-0.3
5,234,493	+		GFF5239	0.54	+0.5
5,234,493	+		GFF5239	0.54	+0.6
5,234,493	+		GFF5239	0.54	-1.1
5,234,493	+		GFF5239	0.54	+0.1
5,234,493	+		GFF5239	0.54	-0.7
5,234,493	+		GFF5239	0.54	-0.8
5,234,493	+		GFF5239	0.54	-2.1
5,234,493	+		GFF5239	0.54	+0.5
5,234,501	-		GFF5239	0.55	-1.1
5,234,501	-		GFF5239	0.55	+0.1
5,234,501	-		GFF5239	0.55	-0.3
5,234,501	-		GFF5239	0.55	-0.7
5,234,501	-		GFF5239	0.55	+0.1
5,234,501	-		GFF5239	0.55	-1.1
5,234,501	-		GFF5239	0.55	+0.1
5,234,501	-		GFF5239	0.55	-1.1
5,234,501	-		GFF5239	0.55	-0.3
5,234,501	-		GFF5239	0.55	+1.4
5,234,501	-		GFF5239	0.55	-2.0
5,234,501	-		GFF5239	0.55	-0.1
5,234,501	-		GFF5239	0.55	-2.2
5,234,501	-		GFF5239	0.55	-0.6
5,234,501	-		GFF5239	0.55	-0.6
5,234,520	-		GFF5239	0.56	+1.1
5,234,529	-		GFF5239	0.56	-0.5
5,234,534	-		GFF5239	0.57	-0.1
5,234,590	+		GFF5239	0.60	+0.5
5,234,590	+		GFF5239	0.60	-0.7
5,234,598	-		GFF5239	0.60	+0.1
5,234,599	+		GFF5239	0.60	-0.4
5,234,603	-		GFF5239	0.61	-0.1
5,234,610	-		GFF5239	0.61	-1.7
5,234,612	+		GFF5239	0.61	+0.1
5,234,620	-		GFF5239	0.62	+1.2
5,234,622	+		GFF5239	0.62	+0.8
5,234,622	+		GFF5239	0.62	-1.7
5,234,625	-		GFF5239	0.62	+0.3
5,234,630	-		GFF5239	0.62	+0.1
5,234,636	+		GFF5239	0.62	-0.2
5,234,639	-		GFF5239	0.63	+0.3
5,234,665	-		GFF5239	0.64	-0.4
5,234,701	+		GFF5239	0.66	-0.2
5,234,709	-		GFF5239	0.67	+0.4
5,234,709	-		GFF5239	0.67	-0.2
5,234,733	+		GFF5239	0.68	-1.5
5,234,736	-		GFF5239	0.68	+0.8
5,234,738	+		GFF5239	0.68	-0.9
5,234,780	+		GFF5239	0.71	-1.1
5,234,812	-		GFF5239	0.73	+1.5
5,234,834	-		GFF5239	0.74	-1.7
5,234,852	+		GFF5239	0.75	+0.0
5,234,852	+		GFF5239	0.75	+0.7
5,234,895	-		GFF5239	0.77	-0.2
5,234,909	+		GFF5239	0.78	+0.1
5,234,909	+		GFF5239	0.78	-0.3
5,234,909	+		GFF5239	0.78	-0.6
5,234,909	+		GFF5239	0.78	-2.8
5,234,909	+		GFF5239	0.78	-0.1
5,234,917	-		GFF5239	0.79	-0.1
5,234,917	-		GFF5239	0.79	-0.7
5,234,917	-		GFF5239	0.79	+0.5
5,234,917	-		GFF5239	0.79	-0.2
5,234,938	+		GFF5239	0.80	-0.2
5,234,950	+		GFF5239	0.80	-1.0
5,234,950	+		GFF5239	0.80	+0.6
5,234,973	+		GFF5239	0.82	+0.9
5,234,983	+		GFF5239	0.82	-1.9
5,234,983	+		GFF5239	0.82	-0.5
5,235,014	+		GFF5239	0.84	-1.7
5,235,014	+		GFF5239	0.84	+0.0
5,235,023	-		GFF5239	0.85	+0.0
5,235,023	-		GFF5239	0.85	+0.2
5,235,037	+		GFF5239	0.85	+0.5
5,235,037	+		GFF5239	0.85	+0.2
5,235,052	-		GFF5239	0.86	+0.3
5,235,067	+		GFF5239	0.87	+0.9
5,235,085	+		GFF5239	0.88	-0.8
5,235,106	+		GFF5239	0.89	+0.6
5,235,119	+				+0.9
5,235,144	-				+1.2
5,235,160	+				-1.9
5,235,165	+				+0.4
5,235,165	+				-0.7
5,235,165	+				-0.1
5,235,168	-				-0.2
5,235,169	-				-0.9
5,235,169	-				-0.7
5,235,170	+				-2.3
5,235,173	-				+0.6
5,235,173	-				+0.3
5,235,173	-				-0.9
5,235,186	+				-0.4
5,235,186	+				-0.9
5,235,194	-				+0.4
5,235,196	+				+0.5
5,235,197	-				+0.5
5,235,199	-				-2.6
5,235,204	-				-0.7
5,235,204	-				+0.9
5,235,204	-				+1.2
5,235,207	+				+0.3
5,235,229	+				-0.2
5,235,243	+				-0.1
5,235,254	+				-0.3
5,235,262	-				-0.2
5,235,270	+				-0.3
5,235,274	+				+0.3
5,235,277	-				+1.8
5,235,283	-				-0.8
5,235,292	+				-0.0
5,235,293	+				-1.4
5,235,293	+				-0.7
5,235,310	-				-0.7
5,235,322	-				-1.1
5,235,335	+				+0.6
5,235,343	+				+0.4
5,235,348	+				-1.4
5,235,351	+				+0.3
5,235,359	-				+0.6
5,235,366	+				-1.3
5,235,389	+				+0.8
5,235,395	-				-0.1
5,235,402	+				-0.3
5,235,410	-				+0.2
5,235,410	-				+0.9
5,235,415	+				-0.3
5,235,418	-				-1.5
5,235,425	+				-0.2
5,235,425	+				-0.0
5,235,425	+				-0.7
5,235,433	-				-0.9
5,235,433	-				-0.5
5,235,445	-				+1.5
5,235,449	+				+0.3
5,235,449	+				-0.1
5,235,457	+				+0.4
5,235,463	-				-1.7
5,235,487	+		GFF5240	0.11	-1.7
5,235,496	+		GFF5240	0.12	+0.4
5,235,517	-		GFF5240	0.16	+0.6
5,235,527	-		GFF5240	0.17	+0.5
5,235,554	+		GFF5240	0.21	+0.5
5,235,554	+		GFF5240	0.21	-0.9
5,235,562	-		GFF5240	0.22	+0.2
5,235,562	-		GFF5240	0.22	-0.5
5,235,562	-		GFF5240	0.22	-0.7
5,235,566	+		GFF5240	0.23	+0.9
5,235,589	-		GFF5240	0.26	-0.1
5,235,590	+		GFF5240	0.26	-0.8
5,235,595	+		GFF5240	0.27	-0.5
5,235,595	+		GFF5240	0.27	-3.0
5,235,598	-		GFF5240	0.28	+0.3
5,235,650	+		GFF5240	0.35	+0.5
5,235,658	-		GFF5240	0.36	+0.4
5,235,663	-		GFF5240	0.37	+0.7
5,235,684	+		GFF5240	0.40	-0.5
5,235,684	+		GFF5240	0.40	+0.2
5,235,684	+		GFF5240	0.40	-0.9
5,235,684	+		GFF5240	0.40	-1.2
5,235,684	+		GFF5240	0.40	-0.9
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