Strain Fitness in Sphingobium sp. HT1-2 around GFF5236

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,229,184	+		GFF5235	0.21	+0.7
5,229,184	+		GFF5235	0.21	-0.1
5,229,192	-		GFF5235	0.22	+1.7
5,229,192	-		GFF5235	0.22	-1.3
5,229,192	-		GFF5235	0.22	-0.9
5,229,194	+		GFF5235	0.22	+1.0
5,229,195	+		GFF5235	0.22	-0.5
5,229,196	+		GFF5235	0.22	-0.6
5,229,203	-		GFF5235	0.23	+0.4
5,229,203	-		GFF5235	0.23	+0.2
5,229,234	+		GFF5235	0.25	-2.4
5,229,241	+		GFF5235	0.26	-0.3
5,229,243	+		GFF5235	0.26	+0.1
5,229,285	-		GFF5235	0.29	+0.5
5,229,290	-		GFF5235	0.30	-0.2
5,229,292	+		GFF5235	0.30	-0.5
5,229,292	+		GFF5235	0.30	-0.2
5,229,300	-		GFF5235	0.31	+0.7
5,229,300	-		GFF5235	0.31	-0.2
5,229,300	-		GFF5235	0.31	-0.5
5,229,300	-		GFF5235	0.31	-0.1
5,229,300	-		GFF5235	0.31	-1.5
5,229,302	+		GFF5235	0.31	-0.2
5,229,302	+		GFF5235	0.31	-2.7
5,229,307	+		GFF5235	0.31	+1.1
5,229,310	-		GFF5235	0.31	+1.4
5,229,310	-		GFF5235	0.31	-0.4
5,229,324	+		GFF5235	0.33	+0.6
5,229,332	-		GFF5235	0.33	+0.0
5,229,332	-		GFF5235	0.33	-0.6
5,229,337	+		GFF5235	0.34	+1.4
5,229,350	-		GFF5235	0.35	-0.1
5,229,351	-		GFF5235	0.35	-0.7
5,229,379	+		GFF5235	0.37	-2.0
5,229,380	+		GFF5235	0.37	-1.3
5,229,385	+		GFF5235	0.38	+1.4
5,229,385	+		GFF5235	0.38	-0.1
5,229,385	+		GFF5235	0.38	-0.3
5,229,388	-		GFF5235	0.38	+0.2
5,229,393	-		GFF5235	0.38	-0.2
5,229,393	-		GFF5235	0.38	-1.1
5,229,406	+		GFF5235	0.39	+0.1
5,229,456	+		GFF5235	0.43	-2.3
5,229,472	+		GFF5235	0.45	-1.5
5,229,472	+		GFF5235	0.45	+0.1
5,229,472	+		GFF5235	0.45	+0.2
5,229,472	+		GFF5235	0.45	+0.3
5,229,477	-		GFF5235	0.45	-1.3
5,229,477	-		GFF5235	0.45	+0.7
5,229,480	-		GFF5235	0.45	+0.8
5,229,480	-		GFF5235	0.45	-1.5
5,229,480	-		GFF5235	0.45	-0.8
5,229,480	-		GFF5235	0.45	-0.9
5,229,480	-		GFF5235	0.45	+0.6
5,229,480	-		GFF5235	0.45	-1.2
5,229,480	-		GFF5235	0.45	-0.9
5,229,491	-		GFF5235	0.46	-0.3
5,229,555	-		GFF5235	0.51	-0.7
5,229,557	+		GFF5235	0.51	+0.1
5,229,590	+		GFF5235	0.54	-0.9
5,229,590	+		GFF5235	0.54	+0.1
5,229,590	+		GFF5235	0.54	+0.4
5,229,596	-		GFF5235	0.55	-0.3
5,229,598	-		GFF5235	0.55	+0.3
5,229,598	-		GFF5235	0.55	-0.4
5,229,608	-		GFF5235	0.56	-0.5
5,229,627	-		GFF5235	0.57	+0.9
5,229,632	+		GFF5235	0.58	+1.8
5,229,639	+		GFF5235	0.58	-0.7
5,229,640	-		GFF5235	0.58	-0.0
5,229,647	-		GFF5235	0.59	-0.6
5,229,658	-		GFF5235	0.60	-0.1
5,229,658	-		GFF5235	0.60	-1.4
5,229,660	+		GFF5235	0.60	-0.5
5,229,660	+		GFF5235	0.60	-2.1
5,229,668	-		GFF5235	0.60	+0.9
5,229,668	-		GFF5235	0.60	+1.5
5,229,670	+		GFF5235	0.61	-0.1
5,229,674	+		GFF5235	0.61	+1.1
5,229,680	-		GFF5235	0.61	-0.1
5,229,680	-		GFF5235	0.61	-0.1
5,229,684	+		GFF5235	0.62	-0.5
5,229,701	+		GFF5235	0.63	+0.5
5,229,701	+		GFF5235	0.63	-0.2
5,229,701	+		GFF5235	0.63	+0.0
5,229,708	+		GFF5235	0.64	-0.8
5,229,709	-		GFF5235	0.64	-1.7
5,229,709	-		GFF5235	0.64	-1.4
5,229,709	-		GFF5235	0.64	-0.2
5,229,709	-		GFF5235	0.64	-0.3
5,229,709	-		GFF5235	0.64	+0.1
5,229,709	-		GFF5235	0.64	-0.9
5,229,709	-		GFF5235	0.64	+0.7
5,229,709	-		GFF5235	0.64	-0.2
5,229,716	-		GFF5235	0.64	-0.5
5,229,737	+		GFF5235	0.66	-2.0
5,229,745	-		GFF5235	0.67	+0.1
5,229,745	-		GFF5235	0.67	+0.1
5,229,747	+		GFF5235	0.67	+0.3
5,229,750	-		GFF5235	0.67	-0.4
5,229,750	-		GFF5235	0.67	-1.0
5,229,750	-		GFF5235	0.67	-0.1
5,229,776	+		GFF5235	0.69	-0.7
5,229,793	+		GFF5235	0.71	+1.0
5,229,798	+		GFF5235	0.71	-0.9
5,229,798	+		GFF5235	0.71	-1.7
5,229,798	+		GFF5235	0.71	+0.3
5,229,803	+		GFF5235	0.71	-0.2
5,229,806	-		GFF5235	0.72	+0.1
5,229,806	-		GFF5235	0.72	+0.5
5,229,806	-		GFF5235	0.72	-0.5
5,229,807	+		GFF5235	0.72	+1.9
5,229,807	+		GFF5235	0.72	+0.1
5,229,812	+		GFF5235	0.72	-0.4
5,229,812	+		GFF5235	0.72	-0.9
5,229,812	+		GFF5235	0.72	-0.6
5,229,812	+		GFF5235	0.72	+0.1
5,229,812	+		GFF5235	0.72	-0.3
5,229,817	+		GFF5235	0.72	+1.5
5,229,820	-		GFF5235	0.73	+1.3
5,229,820	-		GFF5235	0.73	-0.1
5,229,820	-		GFF5235	0.73	+1.6
5,229,820	-		GFF5235	0.73	+0.6
5,229,820	-		GFF5235	0.73	+0.9
5,229,820	-		GFF5235	0.73	+0.3
5,229,827	+		GFF5235	0.73	-1.8
5,229,827	+		GFF5235	0.73	-1.9
5,229,846	-		GFF5235	0.75	+1.0
5,229,895	-		GFF5235	0.79	+0.2
5,229,904	+		GFF5235	0.80	-0.6
5,229,921	+		GFF5235	0.81	+0.4
5,229,921	+		GFF5235	0.81	-0.6
5,229,921	+		GFF5235	0.81	+0.1
5,229,953	-		GFF5235	0.83	+0.9
5,229,953	-		GFF5235	0.83	-0.1
5,229,958	-		GFF5235	0.84	-0.6
5,229,968	-		GFF5235	0.85	-2.2
5,229,993	-		GFF5235	0.87	-2.6
5,229,994	-		GFF5235	0.87	+0.6
5,230,030	+		GFF5235	0.90	+1.3
5,230,030	+		GFF5235	0.90	-0.7
5,230,030	+		GFF5235	0.90	-0.8
5,230,030	+		GFF5235	0.90	+0.6
5,230,038	-				+0.9
5,230,038	-				-0.9
5,230,038	-				-1.5
5,230,038	-				-2.5
5,230,038	-				+0.6
5,230,038	-				-0.9
5,230,038	-				+0.8
5,230,050	+				+0.2
5,230,061	+				+1.0
5,230,066	+				+0.7
5,230,066	+				+0.2
5,230,071	+				+0.3
5,230,071	+				-2.0
5,230,074	-				-0.3
5,230,076	+				-0.9
5,230,076	+				-1.2
5,230,076	+				+0.6
5,230,076	+				-0.4
5,230,076	+				-0.9
5,230,076	+				-0.8
5,230,076	+				-0.5
5,230,076	+				-0.7
5,230,076	+				-1.0
5,230,076	+				-0.7
5,230,076	+				-0.6
5,230,076	+				-2.7
5,230,076	+				+0.3
5,230,076	+				+0.1
5,230,076	+				+1.1
5,230,076	+				+0.0
5,230,079	-				+0.9
5,230,079	-				+0.4
5,230,084	-				-0.2
5,230,084	-				-1.1
5,230,084	-				+0.5
5,230,084	-				-1.2
5,230,084	-				+1.1
5,230,084	-				-0.7
5,230,084	-				+0.7
5,230,084	-				-1.0
5,230,084	-				-0.5
5,230,084	-				-0.4
5,230,084	-				-0.7
5,230,084	-				+0.5
5,230,084	-				+0.3
5,230,084	-				-0.8
5,230,084	-				+1.7
5,230,084	-				-1.1
5,230,084	-				+0.6
5,230,086	+				-0.3
5,230,111	+				-0.4
5,230,119	-				+1.1
5,230,121	+				+0.1
5,230,130	+				-0.7
5,230,130	+				-0.8
5,230,132	+				-0.5
5,230,138	-				+1.2
5,230,145	-				-2.5
5,230,145	-				-0.4
5,230,151	-				+0.1
5,230,160	+				-0.3
5,230,168	-				+0.2
5,230,222	+				-0.9
5,230,276	+		GFF5236	0.16	+1.3
5,230,317	+		GFF5236	0.21	-0.6
5,230,339	+		GFF5236	0.24	-0.6
5,230,354	+		GFF5236	0.26	-1.1
5,230,368	-		GFF5236	0.28	+1.2
5,230,372	-		GFF5236	0.28	-0.3
5,230,400	-		GFF5236	0.32	-0.0
5,230,402	+		GFF5236	0.32	-0.0
5,230,403	+		GFF5236	0.32	+0.6
5,230,420	+		GFF5236	0.34	-0.1
5,230,428	-		GFF5236	0.36	+0.8
5,230,438	-		GFF5236	0.37	+1.6
5,230,447	-		GFF5236	0.38	+0.8
5,230,448	+		GFF5236	0.38	-0.1
5,230,449	+		GFF5236	0.38	+0.8
5,230,456	-		GFF5236	0.39	-0.7
5,230,458	-		GFF5236	0.39	-0.3
5,230,458	-		GFF5236	0.39	-0.1
5,230,464	-		GFF5236	0.40	-0.9
5,230,464	-		GFF5236	0.40	+0.3
5,230,473	-		GFF5236	0.41	+0.4
5,230,478	+		GFF5236	0.42	+0.5
5,230,478	+		GFF5236	0.42	-1.1
5,230,478	+		GFF5236	0.42	+0.3
5,230,478	+		GFF5236	0.42	-2.2
5,230,479	+		GFF5236	0.42	+1.4
5,230,480	+		GFF5236	0.42	+1.3
5,230,485	+		GFF5236	0.43	+0.1
5,230,486	-		GFF5236	0.43	+1.3
5,230,486	-		GFF5236	0.43	+0.4
5,230,486	-		GFF5236	0.43	-1.0
5,230,488	-		GFF5236	0.43	-0.6
5,230,497	+		GFF5236	0.44	-0.5
5,230,541	-		GFF5236	0.50	-0.8
5,230,559	-		GFF5236	0.52	-0.9
5,230,572	+		GFF5236	0.54	-0.4
5,230,585	+		GFF5236	0.56	-0.8
5,230,585	+		GFF5236	0.56	+0.7
5,230,597	+		GFF5236	0.57	+0.7
5,230,597	+		GFF5236	0.57	-0.6
5,230,597	+		GFF5236	0.57	+0.3
5,230,597	+		GFF5236	0.57	+0.5
5,230,605	-		GFF5236	0.58	+0.7
5,230,605	-		GFF5236	0.58	-1.8
5,230,605	-		GFF5236	0.58	-2.5
5,230,605	-		GFF5236	0.58	+0.1
5,230,605	-		GFF5236	0.58	-0.7
5,230,605	-		GFF5236	0.58	+0.3
5,230,612	+		GFF5236	0.59	-1.9
5,230,620	-		GFF5236	0.60	+0.7
5,230,623	-		GFF5236	0.61	+0.4
5,230,623	-		GFF5236	0.61	-0.3
5,230,632	+		GFF5236	0.62	+1.0
5,230,632	+		GFF5236	0.62	+0.1
5,230,653	+		GFF5236	0.65	+0.1
5,230,661	-		GFF5236	0.66	-0.4
5,230,665	+		GFF5236	0.66	-0.4
5,230,678	-		GFF5236	0.68	-0.1
5,230,690	+		GFF5236	0.69	+1.7
5,230,719	+		GFF5236	0.73	+0.1
5,230,725	-		GFF5236	0.74	+1.5
5,230,729	+		GFF5236	0.74	+0.3
5,230,734	+		GFF5236	0.75	-0.3
5,230,734	+		GFF5236	0.75	+0.2
5,230,734	+		GFF5236	0.75	+0.6
5,230,742	-		GFF5236	0.76	-1.5
5,230,742	-		GFF5236	0.76	-0.6
5,230,742	-		GFF5236	0.76	-1.3
5,230,742	-		GFF5236	0.76	-1.5
5,230,769	+		GFF5236	0.80	-0.8
5,230,775	+		GFF5236	0.80	-0.9
5,230,775	+		GFF5236	0.80	+0.2
5,230,775	+		GFF5236	0.80	+0.1
5,230,775	+		GFF5236	0.80	-0.4
5,230,777	-		GFF5236	0.81	-0.4
5,230,783	-		GFF5236	0.81	-0.8
5,230,783	-		GFF5236	0.81	+0.3
5,230,806	-		GFF5236	0.84	+0.5
5,230,820	+		GFF5236	0.86	-1.2
5,230,820	+		GFF5236	0.86	-0.8
5,230,887	-				-0.6
5,230,903	+				-0.0
5,230,911	-				-0.7
5,230,920	+				+1.6
5,230,922	+				+0.0
5,230,922	+				-1.8
5,230,941	-				-2.0
5,230,946	+				-0.7
5,230,948	-				+0.3
5,230,999	+				-0.9
5,230,999	+				+0.5
5,231,000	+				+0.2
5,231,010	+				-0.5
5,231,020	+				-0.2
5,231,025	+				-0.9
5,231,025	+				+0.1
5,231,044	+		GFF5237	0.10	-0.6
5,231,044	+		GFF5237	0.10	-1.6
5,231,052	-		GFF5237	0.11	+0.9
5,231,093	+		GFF5237	0.14	-2.1
5,231,093	+		GFF5237	0.14	-0.6
5,231,093	+		GFF5237	0.14	+0.6
5,231,093	+		GFF5237	0.14	-0.3
5,231,093	+		GFF5237	0.14	+0.2
5,231,093	+		GFF5237	0.14	-2.2
5,231,093	+		GFF5237	0.14	-0.0
5,231,101	-		GFF5237	0.15	+1.0
5,231,101	-		GFF5237	0.15	+0.4
5,231,101	-		GFF5237	0.15	-0.2
5,231,101	-		GFF5237	0.15	+0.4
5,231,101	-		GFF5237	0.15	+0.1
5,231,101	-		GFF5237	0.15	+1.0
5,231,101	-		GFF5237	0.15	+1.3
5,231,101	-		GFF5237	0.15	+0.3
5,231,101	-		GFF5237	0.15	-1.0
5,231,101	-		GFF5237	0.15	-2.0
5,231,101	-		GFF5237	0.15	+0.1
5,231,103	+		GFF5237	0.15	-0.1
5,231,111	-		GFF5237	0.16	+0.8
5,231,149	-		GFF5237	0.19	+0.1
5,231,150	+		GFF5237	0.19	-0.7
5,231,158	+		GFF5237	0.20	+0.8
5,231,158	+		GFF5237	0.20	+0.3
5,231,158	-		GFF5237	0.20	+0.3
5,231,160	+		GFF5237	0.20	-1.2
5,231,160	+		GFF5237	0.20	-0.3
5,231,166	-		GFF5237	0.20	+0.4
5,231,166	-		GFF5237	0.20	-0.3
5,231,187	-		GFF5237	0.22	-1.0
5,231,195	-		GFF5237	0.23	+0.2
5,231,205	+		GFF5237	0.24	+0.1
5,231,242	-		GFF5237	0.27	-1.9
5,231,244	+		GFF5237	0.27	-0.6
5,231,249	+		GFF5237	0.27	+0.4
5,231,249	+		GFF5237	0.27	+0.6
5,231,302	-		GFF5237	0.32	-0.2
5,231,319	-		GFF5237	0.33	+0.9
5,231,342	-		GFF5237	0.35	-0.9
5,231,343	+		GFF5237	0.35	+0.8
5,231,371	-		GFF5237	0.38	-0.1
5,231,375	+		GFF5237	0.38	-0.4
5,231,375	+		GFF5237	0.38	+1.3
5,231,375	+		GFF5237	0.38	+0.3
5,231,383	-		GFF5237	0.39	-0.7
5,231,427	+		GFF5237	0.42	+0.4
5,231,427	+		GFF5237	0.42	+0.7
5,231,427	+		GFF5237	0.42	+0.3
5,231,427	+		GFF5237	0.42	+0.5
5,231,435	-		GFF5237	0.43	-0.2
5,231,435	-		GFF5237	0.43	+0.5
5,231,435	-		GFF5237	0.43	+0.1
5,231,435	-		GFF5237	0.43	+1.4
5,231,453	-		GFF5237	0.44	+1.2
5,231,453	-		GFF5237	0.44	-1.3
5,231,456	+		GFF5237	0.45	+0.2
5,231,464	+		GFF5237	0.45	+0.6
5,231,471	+		GFF5237	0.46	-2.1
5,231,484	+		GFF5237	0.47	-2.2
5,231,484	+		GFF5237	0.47	-2.5
5,231,484	+		GFF5237	0.47	+0.9
5,231,484	+		GFF5237	0.47	+1.4
5,231,484	+		GFF5237	0.47	+0.6
5,231,484	+		GFF5237	0.47	+0.1
5,231,484	+		GFF5237	0.47	-0.7
5,231,484	+		GFF5237	0.47	+0.8
5,231,489	+		GFF5237	0.47	-0.2
5,231,492	-		GFF5237	0.48	-2.0
5,231,492	-		GFF5237	0.48	+0.4
5,231,492	-		GFF5237	0.48	+1.5
5,231,492	-		GFF5237	0.48	-0.3
5,231,492	-		GFF5237	0.48	+0.2
5,231,492	-		GFF5237	0.48	-1.3
5,231,497	+		GFF5237	0.48	+0.6
5,231,497	+		GFF5237	0.48	-0.3
5,231,497	-		GFF5237	0.48	+0.3
5,231,505	-		GFF5237	0.49	-0.1
5,231,505	-		GFF5237	0.49	-0.7
5,231,517	-		GFF5237	0.50	-0.7
5,231,519	+		GFF5237	0.50	+0.6
5,231,522	-		GFF5237	0.50	-0.8
5,231,522	-		GFF5237	0.50	+0.3
5,231,558	-		GFF5237	0.53	-1.1
5,231,593	+		GFF5237	0.56	-0.8
5,231,595	-		GFF5237	0.56	+1.0
5,231,606	+		GFF5237	0.57	+0.1
5,231,639	-		GFF5237	0.60	-0.1
5,231,639	-		GFF5237	0.60	+0.1
5,231,641	+		GFF5237	0.60	-1.4
5,231,641	+		GFF5237	0.60	+1.6
5,231,677	+		GFF5237	0.63	-1.0
5,231,685	-		GFF5237	0.64	+0.5
5,231,685	-		GFF5237	0.64	-0.0
5,231,685	-		GFF5237	0.64	-0.4
5,231,685	-		GFF5237	0.64	-0.2
5,231,685	-		GFF5237	0.64	-0.2
5,231,685	-		GFF5237	0.64	+0.2
5,231,685	-		GFF5237	0.64	-0.7
5,231,698	+		GFF5237	0.65	-0.6
5,231,698	+		GFF5237	0.65	-0.4
5,231,706	-		GFF5237	0.66	-0.1
5,231,726	+		GFF5237	0.67	+1.0
5,231,726	+		GFF5237	0.67	+0.7
5,231,726	+		GFF5237	0.67	-0.3
5,231,734	-		GFF5237	0.68	-0.0
5,231,734	-		GFF5237	0.68	+0.4
5,231,823	+		GFF5237	0.75	-0.2
5,231,823	+		GFF5237	0.75	+1.1
5,231,831	-		GFF5237	0.76	-0.1
5,231,831	-		GFF5237	0.76	-0.1
5,231,836	-		GFF5237	0.76	+0.3
5,231,855	+		GFF5237	0.78	-0.4
5,231,856	+		GFF5237	0.78	-1.3
5,231,856	+		GFF5237	0.78	+0.2
5,231,862	+		GFF5237	0.79	-0.0
5,231,919	+		GFF5237	0.83	-1.0
5,231,919	+		GFF5237	0.83	+0.1
5,231,919	+		GFF5237	0.83	+0.0
5,231,919	+		GFF5237	0.83	-0.7
5,231,919	+		GFF5237	0.83	+0.6
5,231,919	+		GFF5237	0.83	+1.2
5,231,919	+		GFF5237	0.83	+0.4
5,231,919	+		GFF5237	0.83	+0.4
5,231,924	+		GFF5237	0.84	-0.2
5,231,924	+		GFF5237	0.84	+0.0
5,231,924	+		GFF5237	0.84	+1.3
5,231,924	+		GFF5237	0.84	-1.7
5,231,924	+		GFF5237	0.84	-0.3
5,231,924	+		GFF5237	0.84	-0.6
5,231,924	+		GFF5237	0.84	-0.3
5,231,924	+		GFF5237	0.84	+0.6
5,231,924	+		GFF5237	0.84	+1.0
5,231,926	-		GFF5237	0.84	-1.3