Strain Fitness in Sphingobium sp. HT1-2 around GFF5232

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,223,054	-		GFF5231	0.34	+0.0
5,223,056	-		GFF5231	0.34	-0.3
5,223,065	-		GFF5231	0.35	-1.7
5,223,075	+		GFF5231	0.36	+0.9
5,223,081	-		GFF5231	0.36	-0.0
5,223,086	+		GFF5231	0.36	-1.9
5,223,143	-		GFF5231	0.40	+1.5
5,223,147	+		GFF5231	0.41	+0.4
5,223,160	-		GFF5231	0.42	+0.0
5,223,177	+		GFF5231	0.43	-0.8
5,223,189	-		GFF5231	0.44	-2.3
5,223,197	+		GFF5231	0.44	-0.8
5,223,197	+		GFF5231	0.44	-0.3
5,223,203	-		GFF5231	0.45	-1.3
5,223,216	-		GFF5231	0.46	+0.3
5,223,221	-		GFF5231	0.46	-0.0
5,223,274	-		GFF5231	0.50	-0.9
5,223,292	-		GFF5231	0.51	-2.0
5,223,307	-		GFF5231	0.52	+1.5
5,223,406	-		GFF5231	0.59	+0.9
5,223,406	-		GFF5231	0.59	+0.3
5,223,410	+		GFF5231	0.59	-0.6
5,223,446	+		GFF5231	0.62	+0.9
5,223,466	-		GFF5231	0.63	-0.8
5,223,466	-		GFF5231	0.63	+0.2
5,223,520	-		GFF5231	0.67	-1.3
5,223,531	+		GFF5231	0.68	+0.9
5,223,535	+		GFF5231	0.68	+1.5
5,223,535	+		GFF5231	0.68	-0.3
5,223,535	+		GFF5231	0.68	+0.0
5,223,543	-		GFF5231	0.69	-0.6
5,223,545	+		GFF5231	0.69	+0.7
5,223,548	-		GFF5231	0.69	-0.6
5,223,559	-		GFF5231	0.70	+0.2
5,223,559	-		GFF5231	0.70	+1.0
5,223,561	+		GFF5231	0.70	-0.2
5,223,648	+		GFF5231	0.76	-1.8
5,223,653	+		GFF5231	0.77	-0.3
5,223,656	-		GFF5231	0.77	-0.0
5,223,656	-		GFF5231	0.77	-2.0
5,223,657	+		GFF5231	0.77	+1.4
5,223,657	+		GFF5231	0.77	-0.6
5,223,657	+		GFF5231	0.77	-0.2
5,223,657	+		GFF5231	0.77	-0.2
5,223,665	-		GFF5231	0.78	+0.5
5,223,665	-		GFF5231	0.78	-2.0
5,223,665	-		GFF5231	0.78	+0.4
5,223,665	-		GFF5231	0.78	-0.1
5,223,670	-		GFF5231	0.78	+1.1
5,223,709	+		GFF5231	0.81	-1.2
5,223,717	-		GFF5231	0.81	-0.8
5,223,717	-		GFF5231	0.81	+0.6
5,223,717	-		GFF5231	0.81	-0.2
5,223,741	+		GFF5231	0.83	-0.6
5,223,741	+		GFF5231	0.83	+0.3
5,223,749	-		GFF5231	0.84	+1.1
5,223,749	-		GFF5231	0.84	-0.9
5,223,818	-		GFF5231	0.88	+0.2
5,223,818	-		GFF5231	0.88	-0.6
5,223,818	-		GFF5231	0.88	+1.0
5,223,826	-		GFF5231	0.89	+0.1
5,223,835	+		GFF5231	0.90	-0.4
5,223,843	-				+0.7
5,223,843	-				+0.2
5,223,843	-				-0.2
5,223,843	-				-0.8
5,223,889	+				-0.4
5,223,889	+				+0.4
5,223,897	-				+0.0
5,223,913	-				-1.4
5,223,923	-				-1.3
5,223,939	+				-0.2
5,223,939	+				+0.2
5,223,945	-				+0.1
5,223,945	-				+0.9
5,223,945	-				-0.6
5,223,972	+				-2.2
5,224,004	+				-1.8
5,224,011	+				+0.4
5,224,011	+				-0.6
5,224,012	-				-3.5
5,224,019	-				-2.7
5,224,019	-				+0.2
5,224,019	-				+2.0
5,224,019	-				+0.8
5,224,019	-				-0.5
5,224,020	-				-0.6
5,224,020	-				+0.7
5,224,022	+				+0.7
5,224,024	+				-0.8
5,224,030	-				-0.4
5,224,030	-				-1.8
5,224,030	-				-0.2
5,224,030	-				-0.3
5,224,047	+				-0.9
5,224,068	+				+0.4
5,224,068	+				+0.3
5,224,068	+				+1.6
5,224,073	+				+0.8
5,224,073	+				+1.2
5,224,076	-				-2.3
5,224,104	-				+1.3
5,224,137	-		GFF5232	0.11	-0.0
5,224,141	+		GFF5232	0.11	+0.7
5,224,141	+		GFF5232	0.11	-0.8
5,224,141	+		GFF5232	0.11	+0.2
5,224,141	+		GFF5232	0.11	-0.1
5,224,149	-		GFF5232	0.12	-0.6
5,224,149	-		GFF5232	0.12	-0.0
5,224,171	+		GFF5232	0.14	+0.4
5,224,171	-		GFF5232	0.14	+0.1
5,224,173	-		GFF5232	0.14	+1.1
5,224,184	-		GFF5232	0.15	+0.2
5,224,204	+		GFF5232	0.17	-0.8
5,224,205	+		GFF5232	0.17	-1.3
5,224,211	-		GFF5232	0.17	-0.7
5,224,211	-		GFF5232	0.17	-0.0
5,224,220	+		GFF5232	0.18	+0.6
5,224,220	+		GFF5232	0.18	-0.7
5,224,220	-		GFF5232	0.18	-1.6
5,224,228	-		GFF5232	0.19	-0.5
5,224,239	-		GFF5232	0.20	+0.6
5,224,239	-		GFF5232	0.20	-0.9
5,224,239	-		GFF5232	0.20	-1.1
5,224,252	+		GFF5232	0.21	-0.6
5,224,257	+		GFF5232	0.22	+0.3
5,224,304	+		GFF5232	0.26	-0.2
5,224,314	-		GFF5232	0.27	+0.7
5,224,365	+		GFF5232	0.31	+0.4
5,224,365	-		GFF5232	0.31	-0.1
5,224,368	-		GFF5232	0.31	-1.2
5,224,368	-		GFF5232	0.31	+0.0
5,224,373	+		GFF5232	0.32	+0.7
5,224,373	-		GFF5232	0.32	+0.2
5,224,378	-		GFF5232	0.32	+0.2
5,224,378	-		GFF5232	0.32	-0.6
5,224,378	-		GFF5232	0.32	+0.0
5,224,400	-		GFF5232	0.34	+0.2
5,224,414	+		GFF5232	0.35	+1.2
5,224,417	-		GFF5232	0.36	+0.5
5,224,432	-		GFF5232	0.37	-0.6
5,224,437	-		GFF5232	0.38	-0.5
5,224,437	-		GFF5232	0.38	+0.2
5,224,476	+		GFF5232	0.41	+0.2
5,224,476	+		GFF5232	0.41	-0.6
5,224,488	+		GFF5232	0.42	-0.6
5,224,498	+		GFF5232	0.43	+0.3
5,224,498	+		GFF5232	0.43	+0.9
5,224,519	+		GFF5232	0.45	-1.0
5,224,530	-		GFF5232	0.46	-0.5
5,224,537	-		GFF5232	0.46	-0.1
5,224,562	+		GFF5232	0.49	+0.1
5,224,572	+		GFF5232	0.49	-0.5
5,224,591	-		GFF5232	0.51	+0.3
5,224,607	+		GFF5232	0.53	+0.1
5,224,607	+		GFF5232	0.53	-2.0
5,224,607	+		GFF5232	0.53	+0.8
5,224,607	+		GFF5232	0.53	-1.8
5,224,607	+		GFF5232	0.53	+0.1
5,224,608	+		GFF5232	0.53	+1.4
5,224,611	+		GFF5232	0.53	-0.5
5,224,615	-		GFF5232	0.53	-1.4
5,224,615	-		GFF5232	0.53	+0.0
5,224,615	-		GFF5232	0.53	-0.3
5,224,615	-		GFF5232	0.53	-1.9
5,224,615	-		GFF5232	0.53	+0.3
5,224,615	-		GFF5232	0.53	+0.5
5,224,615	-		GFF5232	0.53	+0.1
5,224,615	-		GFF5232	0.53	+0.1
5,224,617	+		GFF5232	0.53	-0.4
5,224,619	-		GFF5232	0.54	-2.0
5,224,619	-		GFF5232	0.54	+0.6
5,224,673	+		GFF5232	0.58	-0.2
5,224,680	-		GFF5232	0.59	-1.7
5,224,691	-		GFF5232	0.60	+0.3
5,224,702	-		GFF5232	0.61	-1.6
5,224,725	-		GFF5232	0.63	+0.3
5,224,743	+		GFF5232	0.65	+0.3
5,224,743	+		GFF5232	0.65	+0.2
5,224,743	+		GFF5232	0.65	+0.2
5,224,743	+		GFF5232	0.65	+1.5
5,224,743	+		GFF5232	0.65	-0.4
5,224,743	+		GFF5232	0.65	-1.2
5,224,743	+		GFF5232	0.65	-1.5
5,224,743	+		GFF5232	0.65	-1.3
5,224,743	+		GFF5232	0.65	-1.8
5,224,743	+		GFF5232	0.65	+0.4
5,224,743	+		GFF5232	0.65	-3.2
5,224,743	+		GFF5232	0.65	+1.2
5,224,743	+		GFF5232	0.65	-0.1
5,224,743	+		GFF5232	0.65	+1.2
5,224,743	+		GFF5232	0.65	+0.2
5,224,743	+		GFF5232	0.65	-0.2
5,224,743	+		GFF5232	0.65	-0.3
5,224,743	+		GFF5232	0.65	+0.1
5,224,743	+		GFF5232	0.65	+0.3
5,224,743	+		GFF5232	0.65	+0.9
5,224,743	+		GFF5232	0.65	-0.6
5,224,751	-		GFF5232	0.65	-0.8
5,224,751	-		GFF5232	0.65	+0.3
5,224,751	-		GFF5232	0.65	-1.3
5,224,751	-		GFF5232	0.65	-1.5
5,224,751	-		GFF5232	0.65	-0.5
5,224,751	-		GFF5232	0.65	-0.8
5,224,751	-		GFF5232	0.65	-0.7
5,224,751	-		GFF5232	0.65	-0.5
5,224,751	-		GFF5232	0.65	+0.1
5,224,751	-		GFF5232	0.65	+0.2
5,224,751	-		GFF5232	0.65	-0.7
5,224,751	-		GFF5232	0.65	-0.1
5,224,751	-		GFF5232	0.65	+0.6
5,224,751	-		GFF5232	0.65	+0.2
5,224,751	-		GFF5232	0.65	-1.0
5,224,751	-		GFF5232	0.65	-0.1
5,224,751	-		GFF5232	0.65	+0.2
5,224,751	-		GFF5232	0.65	-1.4
5,224,751	-		GFF5232	0.65	+0.1
5,224,751	-		GFF5232	0.65	-1.8
5,224,751	-		GFF5232	0.65	+0.6
5,224,751	-		GFF5232	0.65	-2.4
5,224,751	-		GFF5232	0.65	+0.5
5,224,751	-		GFF5232	0.65	+0.5
5,224,751	-		GFF5232	0.65	-2.2
5,224,751	-		GFF5232	0.65	+0.9
5,224,782	+		GFF5232	0.68	+0.3
5,224,782	+		GFF5232	0.68	+1.0
5,224,820	-		GFF5232	0.71	+0.2
5,224,866	+		GFF5232	0.76	+0.2
5,224,866	+		GFF5232	0.76	+1.6
5,224,866	+		GFF5232	0.76	+1.7
5,224,866	+		GFF5232	0.76	-1.2
5,224,866	+		GFF5232	0.76	-0.1
5,224,866	+		GFF5232	0.76	+0.2
5,224,866	+		GFF5232	0.76	+0.2
5,224,866	+		GFF5232	0.76	-1.2
5,224,866	+		GFF5232	0.76	-0.9
5,224,866	+		GFF5232	0.76	-1.3
5,224,866	+		GFF5232	0.76	+0.1
5,224,899	+		GFF5232	0.78	+0.2
5,224,899	+		GFF5232	0.78	-1.1
5,224,899	-		GFF5232	0.78	-1.9
5,224,910	+		GFF5232	0.79	+0.2
5,224,910	+		GFF5232	0.79	-0.5
5,224,910	+		GFF5232	0.79	+0.4
5,224,923	-		GFF5232	0.81	+0.5
5,224,933	-		GFF5232	0.81	+0.1
5,224,936	-		GFF5232	0.82	+0.2
5,224,947	+		GFF5232	0.83	-0.4
5,224,953	-		GFF5232	0.83	+0.8
5,224,963	-		GFF5232	0.84	+0.0
5,224,963	-		GFF5232	0.84	+0.6
5,224,965	+		GFF5232	0.84	-1.4
5,224,990	+		GFF5232	0.87	-0.6
5,224,992	-		GFF5232	0.87	-0.5
5,224,993	+		GFF5232	0.87	+0.9
5,225,000	+		GFF5232	0.87	-0.5
5,225,000	-		GFF5232	0.87	+0.6
5,225,001	-		GFF5232	0.88	-1.1
5,225,001	-		GFF5232	0.88	+0.4
5,225,008	-		GFF5232	0.88	-0.8
5,225,008	-		GFF5232	0.88	+0.1
5,225,008	-		GFF5232	0.88	-0.2
5,225,008	-		GFF5232	0.88	+0.4
5,225,012	-		GFF5232	0.88	-1.6
5,225,013	-		GFF5232	0.89	+1.3
5,225,054	+				-0.3
5,225,069	+				+1.2
5,225,079	+				+0.9
5,225,079	+				+0.9
5,225,085	-				+0.4
5,225,086	+				-1.3
5,225,087	-				-0.2
5,225,087	-				-1.9
5,225,087	-				-0.5
5,225,089	-				-1.9
5,225,091	+				+0.5
5,225,091	+				-0.6
5,225,096	+				-1.1
5,225,104	-				-0.4
5,225,104	-				+0.1
5,225,104	-				-1.6
5,225,104	-				-1.0
5,225,104	-				-0.4
5,225,114	+				-1.4
5,225,114	-				-0.1
5,225,114	-				-0.1
5,225,159	+				-1.1
5,225,164	+				+0.4
5,225,164	+				+0.8
5,225,167	-				-0.2
5,225,167	-				-0.3
5,225,172	-				+1.3
5,225,203	+				-0.8
5,225,204	+				-1.6
5,225,208	+				+0.9
5,225,208	+				+1.8
5,225,208	+				+0.6
5,225,208	+				+0.1
5,225,208	+				-0.4
5,225,208	+				-0.7
5,225,208	+				+0.8
5,225,208	+				+0.5
5,225,211	-				-0.8
5,225,211	-				+0.6
5,225,211	-				-0.1
5,225,213	+				-0.6
5,225,216	-				+0.1
5,225,218	+				-0.0
5,225,218	+				-0.8
5,225,218	+				-0.2
5,225,218	+				-0.0
5,225,234	+				-0.6
5,225,234	+				+1.5
5,225,234	+				-1.9
5,225,234	+				-0.8
5,225,234	+				+0.0
5,225,234	+				-0.1
5,225,234	+				-0.2
5,225,234	+				-1.6
5,225,234	+				-0.1
5,225,235	+				+0.7
5,225,239	+				-1.0
5,225,242	-				-0.5
5,225,242	-				-0.9
5,225,242	-				+1.4
5,225,242	-				+0.2
5,225,242	-				-0.6
5,225,243	-				+0.9
5,225,247	-				+1.1
5,225,249	-				-0.8
5,225,309	+				+0.1
5,225,309	+				+0.8
5,225,317	-				-0.2
5,225,325	-				+0.4
5,225,331	-				+0.3
5,225,331	-				-1.2
5,225,332	-				+0.9
5,225,334	+				-0.7
5,225,334	+				+0.6
5,225,334	+				+1.1
5,225,334	+				-1.1
5,225,334	+				-1.0
5,225,334	+				+0.4
5,225,334	+				+0.1
5,225,334	+				-2.4
5,225,342	-				-0.3
5,225,342	-				-0.5
5,225,342	-				+0.7
5,225,342	-				-0.2
5,225,342	-				-0.5
5,225,342	-				-3.4
5,225,342	-				-0.4
5,225,342	-				+0.0
5,225,342	-				-0.3
5,225,342	-				+0.8
5,225,342	-				-1.5
5,225,342	-				-0.2
5,225,342	-				-0.4
5,225,342	-				-0.4
5,225,342	-				-0.0
5,225,365	+				+1.9
5,225,365	+				-0.9
5,225,365	+				-1.0
5,225,365	+				+1.4
5,225,373	-				-0.7
5,225,373	-				+0.4
5,225,375	+				+1.7
5,225,375	+				+0.4
5,225,375	+				+0.7
5,225,378	-				-1.9
5,225,383	-				-0.8
5,225,383	-				+0.2
5,225,383	-				+0.3
5,225,385	+				+1.7
5,225,434	+		GFF5233	0.11	+0.1
5,225,442	-		GFF5233	0.11	-1.9
5,225,453	-		GFF5233	0.11	-0.7
5,225,474	+		GFF5233	0.12	+0.2
5,225,484	+		GFF5233	0.12	-1.8
5,225,496	+		GFF5233	0.13	-0.0
5,225,509	-		GFF5233	0.13	+0.5
5,225,509	-		GFF5233	0.13	-0.2
5,225,529	+		GFF5233	0.14	-0.7
5,225,534	-		GFF5233	0.14	-2.0
5,225,542	+		GFF5233	0.14	+1.2
5,225,547	+		GFF5233	0.15	+1.0
5,225,566	+		GFF5233	0.15	-0.0
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